BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00014540
         (1474 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003541622.1| PREDICTED: RNA pseudourine synthase 6, chlor...   662   0.0  
ref|XP_003547248.1| PREDICTED: RNA pseudourine synthase 6, chlor...   653   0.0  
ref|XP_003626283.1| RNA pseudourine synthase [Medicago truncatul...   594   e-167
ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chlor...   592   e-167
ref|XP_002304926.1| predicted protein [Populus trichocarpa] gi|2...   585   e-165

>ref|XP_003541622.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Glycine
            max]
          Length = 473

 Score =  662 bits (1709), Expect = 0.0
 Identities = 308/348 (88%), Positives = 324/348 (93%)
 Frame = +3

Query: 3    QFGAVYYALVCPQPPPNATPEQIRIFKQVTEPSVLRKRASIKGKTVREAQKTFRVTHVDQ 182
            QFGAVYYALVCPQPPPNAT EQIR+FK+VTEPSVLRKRASIKGKTVREAQKTFRVTHVDQ
Sbjct: 126  QFGAVYYALVCPQPPPNATEEQIRVFKEVTEPSVLRKRASIKGKTVREAQKTFRVTHVDQ 185

Query: 183  FVEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTSVGGTTDNIEESCVT 362
            FVEPGTYLRVHVHPKRFPR YEIDWRSRIIAV ESYVVLDKPAGTSVGGTTDNIEESC T
Sbjct: 186  FVEPGTYLRVHVHPKRFPRSYEIDWRSRIIAVAESYVVLDKPAGTSVGGTTDNIEESCAT 245

Query: 363  FATRALGLTTPLMTTHQIDNCTEGCVVLARTKEYCSVFHGKIREXXXXXXXXXXXXSPLP 542
            FATRALG+TTPLMTTHQIDNCTEGCVVLARTK+YCS+FHGKIRE            SPLP
Sbjct: 246  FATRALGMTTPLMTTHQIDNCTEGCVVLARTKDYCSIFHGKIREKKVKKLYLALAASPLP 305

Query: 543  TGIFTHYMRPINMAPRLISEDFIKGWHLCQLEVMDCRKVPWPTTVVQDKYCVDDCGWPSQ 722
            TGI THYMRPINMAPRLISEDFIKGWHLCQLEV++CRK+PWPTT +QDKYCV+DCGWPSQ
Sbjct: 306  TGIITHYMRPINMAPRLISEDFIKGWHLCQLEVLECRKIPWPTTAIQDKYCVEDCGWPSQ 365

Query: 723  DYAYECKINLLTGRTHQIRAQFAACKAPLIGDSMYMPAAIAEMVNPGLSPFGKYKKDFSR 902
            DYAYECKINLLTG+THQIRAQFAA KAPLIGDSMYMPAAIA++ NPGL+PFGKYKKDFS 
Sbjct: 366  DYAYECKINLLTGKTHQIRAQFAAYKAPLIGDSMYMPAAIADVSNPGLNPFGKYKKDFSS 425

Query: 903  ESEKEMAVINWTTQHGKEPSVAIGLQACQISWDDDEHFYKAGLPWWRC 1046
            ESEKE AV+NW  QHGKEPSVAIGLQACQISWDDDEHFY+AGLPWWRC
Sbjct: 426  ESEKETAVVNWMAQHGKEPSVAIGLQACQISWDDDEHFYEAGLPWWRC 473


>ref|XP_003547248.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Glycine
            max]
          Length = 473

 Score =  653 bits (1685), Expect = 0.0
 Identities = 305/348 (87%), Positives = 318/348 (91%)
 Frame = +3

Query: 3    QFGAVYYALVCPQPPPNATPEQIRIFKQVTEPSVLRKRASIKGKTVREAQKTFRVTHVDQ 182
            QFGAVYYALVCPQPPPNAT EQIR+FK+VTEPSVLRKRASIKGKTVREAQKTFRVTHVDQ
Sbjct: 126  QFGAVYYALVCPQPPPNATEEQIRVFKEVTEPSVLRKRASIKGKTVREAQKTFRVTHVDQ 185

Query: 183  FVEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTSVGGTTDNIEESCVT 362
            FVEPGTYLRVHVHPKR PRCYEIDWRSRII V ESYVVLDKPAGTSVGGTTDNIEESC T
Sbjct: 186  FVEPGTYLRVHVHPKRSPRCYEIDWRSRIITVAESYVVLDKPAGTSVGGTTDNIEESCAT 245

Query: 363  FATRALGLTTPLMTTHQIDNCTEGCVVLARTKEYCSVFHGKIREXXXXXXXXXXXXSPLP 542
            FATRALG+TTPLMTTHQIDNCTEGCVVLARTKEYCSVFHGKIRE             PLP
Sbjct: 246  FATRALGMTTPLMTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKFYLALAAFPLP 305

Query: 543  TGIFTHYMRPINMAPRLISEDFIKGWHLCQLEVMDCRKVPWPTTVVQDKYCVDDCGWPSQ 722
            TGI THYMRPI+MAPRLISEDFIKGWHLCQLEV++CRKVPWP T +QDKYC++DCGWPSQ
Sbjct: 306  TGIITHYMRPIDMAPRLISEDFIKGWHLCQLEVLECRKVPWPATAIQDKYCIEDCGWPSQ 365

Query: 723  DYAYECKINLLTGRTHQIRAQFAACKAPLIGDSMYMPAAIAEMVNPGLSPFGKYKKDFSR 902
            DYAYECKINLLTG+THQIRAQFAA KAPLIGDSMYMPAAIA M NPGL+PFGKYKKDFS 
Sbjct: 366  DYAYECKINLLTGKTHQIRAQFAAYKAPLIGDSMYMPAAIANMSNPGLNPFGKYKKDFSS 425

Query: 903  ESEKEMAVINWTTQHGKEPSVAIGLQACQISWDDDEHFYKAGLPWWRC 1046
            ESEKE AV+NW  QHGKEPSVAIGLQACQISWDDDEHFY+A  PWWRC
Sbjct: 426  ESEKETAVVNWIAQHGKEPSVAIGLQACQISWDDDEHFYEASSPWWRC 473


>ref|XP_003626283.1| RNA pseudourine synthase [Medicago truncatula]
            gi|355501298|gb|AES82501.1| RNA pseudourine synthase
            [Medicago truncatula]
          Length = 462

 Score =  594 bits (1532), Expect = e-167
 Identities = 287/358 (80%), Positives = 307/358 (85%), Gaps = 12/358 (3%)
 Frame = +3

Query: 3    QFGAVYYALVCPQPPPNATPEQIRIFKQVTEPSVLRKRASIKGKTVREAQKTFRVTHVDQ 182
            QFGAVY+ALV P+PPP AT EQIRIF+QVTEP VL+KR+S+KGKT+REAQKTFRVT  +Q
Sbjct: 106  QFGAVYFALVSPEPPPTATAEQIRIFEQVTEPLVLQKRSSLKGKTIREAQKTFRVTDANQ 165

Query: 183  FVEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTSVGGTTDNIEESCVT 362
            FVEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTSVG TT NIEESCVT
Sbjct: 166  FVEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTSVGETTGNIEESCVT 225

Query: 363  FATRALGLTTPLMTTHQIDNCTEGCVVLARTKEYCSVFHGKIREXXXXXXXXXXXXSPLP 542
            FATRALGLTTPL+TTHQIDNCTEGCVVLAR KEYCSVFH KIRE            SPLP
Sbjct: 226  FATRALGLTTPLITTHQIDNCTEGCVVLARNKEYCSVFHCKIREKKVKKIYLALAASPLP 285

Query: 543  TGIFTHYMRPINMAPRLISE-----------DF-IKGWHLCQLEVMDCRKVPWPTTVVQD 686
             GI  HYMRP N APRLISE           D+ IKGWH+CQLEVMDCRK+PWP  VVQD
Sbjct: 286  IGIIKHYMRPTNTAPRLISEGNSTQIGMLCKDYCIKGWHICQLEVMDCRKIPWPAIVVQD 345

Query: 687  KYCVDDCGWPSQDYAYECKINLLTGRTHQIRAQFAACKAPLIGDSMYMPAAIAEMVNPGL 866
            +Y    CGWPSQDYAYECKINLLTGRTHQIRAQFAACKAP+IGD+MYMPAAIAEM+NPGL
Sbjct: 346  EY----CGWPSQDYAYECKINLLTGRTHQIRAQFAACKAPIIGDTMYMPAAIAEMINPGL 401

Query: 867  SPFGKYKKDFSRESEKEMAVINWTTQHGKEPSVAIGLQACQISWDDDEHFYKAGLPWW 1040
            +PFGKY KDFS ESEK+ AVINW  QHGKEPSVAIGLQACQISWDDDE+ Y+AGLPWW
Sbjct: 402  NPFGKYNKDFSSESEKKTAVINWIAQHGKEPSVAIGLQACQISWDDDEYIYRAGLPWW 459


>ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic [Vitis vinifera]
            gi|302144082|emb|CBI23187.3| unnamed protein product
            [Vitis vinifera]
          Length = 472

 Score =  592 bits (1526), Expect = e-167
 Identities = 268/345 (77%), Positives = 308/345 (89%)
 Frame = +3

Query: 6    FGAVYYALVCPQPPPNATPEQIRIFKQVTEPSVLRKRASIKGKTVREAQKTFRVTHVDQF 185
            FGAVYYALVCP+PPP+ATPEQ+R+FK+VT PSVLRKR SIKGKT+REAQKTFR+T V++F
Sbjct: 127  FGAVYYALVCPEPPPSATPEQVRLFKEVTAPSVLRKRPSIKGKTIREAQKTFRITDVNEF 186

Query: 186  VEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTSVGGTTDNIEESCVTF 365
            VE GTYLRVHVHPKRFPRCYEIDW+SRIIAV ESYVVLDKPAGTSVGGTTDNIEESC TF
Sbjct: 187  VEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATF 246

Query: 366  ATRALGLTTPLMTTHQIDNCTEGCVVLARTKEYCSVFHGKIREXXXXXXXXXXXXSPLPT 545
            ATRALGLTTPL TTHQIDNCTEGCVVLARTKEYCSVFHGKIRE            +P+P 
Sbjct: 247  ATRALGLTTPLRTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYRALAAAPMPI 306

Query: 546  GIFTHYMRPINMAPRLISEDFIKGWHLCQLEVMDCRKVPWPTTVVQDKYCVDDCGWPSQD 725
            GI THYMRP+N+APRLISEDFIKGW+LCQLEV++C++VPWP+T++++KYC++D GWP ++
Sbjct: 307  GIVTHYMRPVNIAPRLISEDFIKGWYLCQLEVLECKEVPWPSTLIEEKYCIEDRGWPLKN 366

Query: 726  YAYECKINLLTGRTHQIRAQFAACKAPLIGDSMYMPAAIAEMVNPGLSPFGKYKKDFSRE 905
             A++CKINLLTGRTHQIRAQ AAC AP++GDSMYMPAAIAE+ +PGL+PFGKYKK ++ E
Sbjct: 367  SAFKCKINLLTGRTHQIRAQLAACGAPIVGDSMYMPAAIAEITSPGLNPFGKYKKKYTTE 426

Query: 906  SEKEMAVINWTTQHGKEPSVAIGLQACQISWDDDEHFYKAGLPWW 1040
            +++E AV  W  QHGKEP VAIGLQACQISWDD EHFYKAG PWW
Sbjct: 427  NDRETAVAEWIAQHGKEPGVAIGLQACQISWDDGEHFYKAGSPWW 471


>ref|XP_002304926.1| predicted protein [Populus trichocarpa] gi|222847890|gb|EEE85437.1|
            predicted protein [Populus trichocarpa]
          Length = 470

 Score =  585 bits (1509), Expect = e-165
 Identities = 268/347 (77%), Positives = 301/347 (86%)
 Frame = +3

Query: 6    FGAVYYALVCPQPPPNATPEQIRIFKQVTEPSVLRKRASIKGKTVREAQKTFRVTHVDQF 185
            FGAV+YALVCPQPP  ATPEQIR+F++VT PSVL+KRASIKGKTVREAQKTFR+THVDQF
Sbjct: 121  FGAVHYALVCPQPPRTATPEQIRVFEEVTAPSVLKKRASIKGKTVREAQKTFRITHVDQF 180

Query: 186  VEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTSVGGTTDNIEESCVTF 365
            +E G YLRVHVHPKRFPRCY+IDW+SRII V ES+VVLDKPAGTSVGGTTDNIEESC TF
Sbjct: 181  LEAGMYLRVHVHPKRFPRCYDIDWKSRIIHVTESFVVLDKPAGTSVGGTTDNIEESCATF 240

Query: 366  ATRALGLTTPLMTTHQIDNCTEGCVVLARTKEYCSVFHGKIREXXXXXXXXXXXXSPLPT 545
            ATRALGLT PL TTHQIDNCTEGCVVLART+E CSVFHGKIRE            SP+P 
Sbjct: 241  ATRALGLTAPLRTTHQIDNCTEGCVVLARTREDCSVFHGKIREKTVKKLYIALAASPVPI 300

Query: 546  GIFTHYMRPINMAPRLISEDFIKGWHLCQLEVMDCRKVPWPTTVVQDKYCVDDCGWPSQD 725
            G+  HYMRPINMAPRL+SE+FIKGWHLCQLEVM+C++VPWP  V+++KYCV DCGWPS+D
Sbjct: 301  GVVNHYMRPINMAPRLVSEEFIKGWHLCQLEVMECKRVPWPDAVMEEKYCVQDCGWPSKD 360

Query: 726  YAYECKINLLTGRTHQIRAQFAACKAPLIGDSMYMPAAIAEMVNPGLSPFGKYKKDFSRE 905
            +AYECKINLLTGRTHQIRAQ AA  APL+GDSMYMPAA+AEMV+PG +PFGKYKK ++ E
Sbjct: 361  HAYECKINLLTGRTHQIRAQLAALGAPLVGDSMYMPAAVAEMVSPGCNPFGKYKKQYTSE 420

Query: 906  SEKEMAVINWTTQHGKEPSVAIGLQACQISWDDDEHFYKAGLPWWRC 1046
             +K +AV  W   HGKEP+VAIGLQACQISWDD +H Y AG PWWRC
Sbjct: 421  DDKAIAVEEWVLCHGKEPNVAIGLQACQISWDDGKHIYNAGSPWWRC 467