BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00013709
         (619 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002317630.1| predicted protein [Populus trichocarpa] gi|3...   114   2e-23
ref|XP_002267800.1| PREDICTED: DNA-directed RNA polymerases I, I...   112   7e-23
ref|XP_004137531.1| PREDICTED: DNA-directed RNA polymerases I, I...   110   2e-22
ref|XP_003595899.1| DNA-directed RNA polymerases I, II, and III ...   107   2e-21
tpg|DAA60457.1| TPA: DNA-directed RNA polymerase I, II, and III ...   106   4e-21

>ref|XP_002317630.1| predicted protein [Populus trichocarpa]
           gi|356531072|ref|XP_003534102.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC4-like
           [Glycine max] gi|356560019|ref|XP_003548293.1|
           PREDICTED: DNA-directed RNA polymerases I, II, and III
           subunit RPABC4 [Glycine max] gi|222860695|gb|EEE98242.1|
           predicted protein [Populus trichocarpa]
           gi|255630274|gb|ACU15492.1| unknown [Glycine max]
          Length = 51

 Score =  114 bits (284), Expect = 2e-23
 Identities = 51/51 (100%), Positives = 51/51 (100%)
 Frame = -3

Query: 476 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 324
           MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1   MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51


>ref|XP_002267800.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC4-like [Vitis vinifera]
           gi|225468167|ref|XP_002272054.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC4 [Vitis
           vinifera] gi|297738145|emb|CBI27346.3| unnamed protein
           product [Vitis vinifera]
          Length = 51

 Score =  112 bits (279), Expect = 7e-23
 Identities = 50/51 (98%), Positives = 50/51 (98%)
 Frame = -3

Query: 476 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 324
           MDPQPEPVSYICGDCG ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1   MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51


>ref|XP_004137531.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC4-like [Cucumis sativus]
           gi|449516854|ref|XP_004165461.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC4-like
           [Cucumis sativus]
          Length = 51

 Score =  110 bits (276), Expect = 2e-22
 Identities = 50/51 (98%), Positives = 50/51 (98%)
 Frame = -3

Query: 476 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 324
           MDPQPEPVSYICGDCGMENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1   MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 51


>ref|XP_003595899.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
           [Medicago truncatula] gi|355484947|gb|AES66150.1|
           DNA-directed RNA polymerases I, II, and III subunit
           RPABC4 [Medicago truncatula]
          Length = 121

 Score =  107 bits (267), Expect = 2e-21
 Identities = 47/55 (85%), Positives = 52/55 (94%)
 Frame = -3

Query: 488 LVPIMDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 324
           +V +MDP PEPVSY+CGDCG+ENTLK GDVIQCR+CGYRILYKKRTRRIVQYEAR
Sbjct: 10  IVGVMDPLPEPVSYLCGDCGVENTLKSGDVIQCRDCGYRILYKKRTRRIVQYEAR 64



 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 33/55 (60%), Positives = 40/55 (72%)
 Frame = -3

Query: 488 LVPIMDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 324
           L P MDP P+P+ Y+CGDCG E  L    V+QC  C Y+ILYKKRT R++QYEAR
Sbjct: 67  LKPDMDPPPQPIRYLCGDCGAETPLYTDGVLQCCVCFYKILYKKRTHRVLQYEAR 121


>tpg|DAA60457.1| TPA: DNA-directed RNA polymerase I, II, and III polypeptide isoform
           1, partial [Zea mays] gi|414884444|tpg|DAA60458.1| TPA:
           DNA-directed RNA polymerase I, II, and III polypeptide
           isoform 2, partial [Zea mays]
          Length = 100

 Score =  106 bits (264), Expect = 4e-21
 Identities = 49/52 (94%), Positives = 50/52 (96%), Gaps = 1/52 (1%)
 Frame = -3

Query: 476 MDPQ-PEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 324
           MDPQ PEPVSY+CGDCG ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 49  MDPQQPEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 100