BLASTX nr result

ID: Glycyrrhiza24_contig00013454 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00013454
         (706 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK35856.1| unknown [Lotus japonicus]                              169   5e-40
ref|XP_003602018.1| RING finger family protein [Medicago truncat...   169   5e-40
ref|XP_002306334.1| predicted protein [Populus trichocarpa] gi|2...   119   5e-25
ref|XP_002309999.1| predicted protein [Populus trichocarpa] gi|2...   115   7e-24
ref|XP_004160161.1| PREDICTED: RING finger protein 150-like [Cuc...   109   6e-22

>gb|AFK35856.1| unknown [Lotus japonicus]
          Length = 164

 Score =  169 bits (428), Expect = 5e-40
 Identities = 89/171 (52%), Positives = 102/171 (59%), Gaps = 11/171 (6%)
 Frame = +2

Query: 65  MRSLSKLFQELCGKXXXXXXXXXXXXXXXXWKLTSDTRPITTVEYLRFIEEKNPTICYTK 244
           M++L+KLFQ+LC K                W+LTS+ R ITT +YL FIEE NPTI Y K
Sbjct: 1   MKALTKLFQQLCSKIIILLTLLLVELIVLLWRLTSEKRSITTKQYLEFIEENNPTIRYAK 60

Query: 245 EQA------HV-----ECRVCLSEFEEGEKVRSLKCNHTFHRDCLDKWLQQNWATCPLCR 391
            ++      HV     ECRVCLSEFEEGEKVR LKC HTFH+DCLDKWLQ+ WATCPLCR
Sbjct: 61  RRSSWSELEHVVPDDTECRVCLSEFEEGEKVRRLKCKHTFHKDCLDKWLQECWATCPLCR 120

Query: 392 KXXXXXXXXXXXXQQLQNHEGGFDWNNNDEDLPYLLFALRGGNTSNLRRYL 544
           K              +  H        N E LPYLLF  RGGN SN RRY+
Sbjct: 121 K-------QVLPCDVVSKHRHFLSHEENVEHLPYLLFVWRGGNGSNFRRYV 164


>ref|XP_003602018.1| RING finger family protein [Medicago truncatula]
           gi|355491066|gb|AES72269.1| RING finger family protein
           [Medicago truncatula]
          Length = 157

 Score =  169 bits (428), Expect = 5e-40
 Identities = 85/156 (54%), Positives = 104/156 (66%), Gaps = 1/156 (0%)
 Frame = +2

Query: 74  LSKLFQELCGKXXXXXXXXXXXXXXXXWKLTSDTRPITTVEYLRFIEEKNPTICYTKE-Q 250
           +S +FQ+LC K                WKLTSDT+ ITT +Y++FIEEKNPTI Y K+  
Sbjct: 5   ISNVFQKLCNKIAILLIFVLVELIIFIWKLTSDTQSITTRQYIKFIEEKNPTIRYNKKLN 64

Query: 251 AHVECRVCLSEFEEGEKVRSLKCNHTFHRDCLDKWLQQNWATCPLCRKXXXXXXXXXXXX 430
           +H +C VCLSEFEEGEKVR LKC HTFH+DCLDKWLQ  +ATCPLCR+            
Sbjct: 65  SHGDCSVCLSEFEEGEKVRRLKCKHTFHKDCLDKWLQDYFATCPLCREQVLPDNVVLKHR 124

Query: 431 QQLQNHEGGFDWNNNDEDLPYLLFALRGGNTSNLRR 538
           QQ +N +   +   NDE+LPY+LF LRGGN S+LRR
Sbjct: 125 QQ-RNQQSNIE--GNDENLPYVLFLLRGGNNSHLRR 157


>ref|XP_002306334.1| predicted protein [Populus trichocarpa] gi|222855783|gb|EEE93330.1|
           predicted protein [Populus trichocarpa]
          Length = 149

 Score =  119 bits (299), Expect = 5e-25
 Identities = 60/128 (46%), Positives = 79/128 (61%), Gaps = 4/128 (3%)
 Frame = +2

Query: 161 LTSDTRPITTVEYLRFIEEKNPTICYTKE----QAHVECRVCLSEFEEGEKVRSLKCNHT 328
           L SD   I+T +YLR IEEKNPTI Y+K+    Q  +EC VCLSEF EGE VR LKC HT
Sbjct: 25  LKSDKPIISTTQYLRHIEEKNPTISYSKQLMRQQDSIECAVCLSEFSEGESVRKLKCKHT 84

Query: 329 FHRDCLDKWLQQNWATCPLCRKXXXXXXXXXXXXQQLQNHEGGFDWNNNDEDLPYLLFAL 508
           FH+DCLD+WLQQ  ATCPLCR              +    +   +++ +DE++ ++L AL
Sbjct: 85  FHKDCLDEWLQQCLATCPLCR----AKVLPDEILAKYDRMQSQIEYDGSDEEMIFMLSAL 140

Query: 509 RGGNTSNL 532
            G +   +
Sbjct: 141 HGNSLQRI 148


>ref|XP_002309999.1| predicted protein [Populus trichocarpa] gi|222852902|gb|EEE90449.1|
           predicted protein [Populus trichocarpa]
          Length = 163

 Score =  115 bits (289), Expect = 7e-24
 Identities = 61/129 (47%), Positives = 81/129 (62%), Gaps = 5/129 (3%)
 Frame = +2

Query: 161 LTSDTRPITTVEYLRFIEEKNPTICY----TKEQAHVECRVCLSEFEEGEKVRSLKCNHT 328
           L S+   I+T +YL+ +EEKNPTI Y    T++Q  +EC VCLS+F EGE VR L C HT
Sbjct: 38  LKSNKPIISTTQYLKHMEEKNPTISYSEKLTRQQDSMECAVCLSKFSEGESVRKLNCKHT 97

Query: 329 FHRDCLDKWLQQNWATCPLCRKXXXXXXXXXXXXQQLQNHEGGFDWNNNDEDL-PYLLFA 505
           FH+DCLDKWLQQ+ ATCPLCR              ++QN  G   ++ +DE++ P+LL A
Sbjct: 98  FHKDCLDKWLQQSLATCPLCR-AKVLPDEIVAKYDRMQNQIG---YDGSDEEMAPFLLSA 153

Query: 506 LRGGNTSNL 532
           L G     +
Sbjct: 154 LHGNGLQRI 162


>ref|XP_004160161.1| PREDICTED: RING finger protein 150-like [Cucumis sativus]
          Length = 208

 Score =  109 bits (272), Expect = 6e-22
 Identities = 56/119 (47%), Positives = 74/119 (62%), Gaps = 3/119 (2%)
 Frame = +2

Query: 167 SDTRPITTVEYLRFIEEKNPTICYTKEQAHV---ECRVCLSEFEEGEKVRSLKCNHTFHR 337
           SD R ITT ++ + IE+KNPTI ++ +       +C VCLSEFEEGEKVR L+CNHTFH+
Sbjct: 40  SDKRVITTAQFFKLIEDKNPTIRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHK 99

Query: 338 DCLDKWLQQNWATCPLCRKXXXXXXXXXXXXQQLQNHEGGFDWNNNDEDLPYLLFALRG 514
           DCLD WL+  +ATCPLCR             +     E    ++ +DE+L +LL AL G
Sbjct: 100 DCLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVE----YDGSDEELIFLLSALHG 154


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