BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00013304
         (943 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003591640.1| General transcription factor IIH subunit [Me...   327   e-135
ref|XP_003556327.1| PREDICTED: probable RNA polymerase II transc...   322   e-133
ref|XP_003535467.1| PREDICTED: probable RNA polymerase II transc...   315   e-133
ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc...   252   e-100
emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]   252   1e-97

>ref|XP_003591640.1| General transcription factor IIH subunit [Medicago truncatula]
           gi|355480688|gb|AES61891.1| General transcription factor
           IIH subunit [Medicago truncatula]
          Length = 586

 Score =  327 bits (837), Expect(2) = e-135
 Identities = 164/196 (83%), Positives = 172/196 (87%)
 Frame = -2

Query: 591 DFWNKYFKAEYLHSTKNXXXXXXXXXXXXXXAVFLKDDEILEIEARKKVRRVDPSLDMEA 412
           DFWNKYFKAEYLHSTKN              AVFLKDDEILE EARKKVRRVDP+LDMEA
Sbjct: 227 DFWNKYFKAEYLHSTKNAIAAAAEAAEDEDLAVFLKDDEILENEARKKVRRVDPTLDMEA 286

Query: 411 DQGDDYTHLPDHGIFRDGSKEISEAQHLLYRRTLLQDLNRQSEVVLEGKTLDMEMEHPRT 232
           DQGDDYTHLPDHGIFRDGSKE SEAQ+ LYRRTLLQDLNRQSEVVLEGKTLD++MEHPRT
Sbjct: 287 DQGDDYTHLPDHGIFRDGSKETSEAQNTLYRRTLLQDLNRQSEVVLEGKTLDIDMEHPRT 346

Query: 231 VAEVLARRKQESDGVMEEERRNRISKMTQIEDLQSQDDHPFAPLCIKDPRDYFDSQQVNA 52
             E LARRK ESDGV+ EERRNRISKM QIEDLQ+QDDHPFAPLCIKDPRDYFDSQQ NA
Sbjct: 347 AVEALARRKHESDGVV-EERRNRISKMAQIEDLQAQDDHPFAPLCIKDPRDYFDSQQANA 405

Query: 51  VKTLDDSLAGKEQIRC 4
           VKTLDDSL+GKE+IRC
Sbjct: 406 VKTLDDSLSGKEKIRC 421



 Score =  183 bits (465), Expect(2) = e-135
 Identities = 92/103 (89%), Positives = 95/103 (92%)
 Frame = -3

Query: 902 RAKLLQEDSKLQKLHMELVASGKLTESEFWATKKKLLDQDESRKSKQRTGFKNSLIFDTK 723
           R KLL EDSKL+K+HMELV S KLTESEFWATKKKLLDQDESRK KQR GFKNSLIFDTK
Sbjct: 123 RMKLLGEDSKLKKIHMELVMSDKLTESEFWATKKKLLDQDESRKLKQRIGFKNSLIFDTK 182

Query: 722 PTSDGRINQVKFQLTPEIKYQIFTLKPAVHQAFLKFVPSKLSE 594
           PTSDGRINQVKFQLTPEIKYQIF LKPAVHQAFL FVPSK+SE
Sbjct: 183 PTSDGRINQVKFQLTPEIKYQIFALKPAVHQAFLNFVPSKMSE 225


>ref|XP_003556327.1| PREDICTED: probable RNA polymerase II transcription factor B
           subunit 1-1-like [Glycine max]
          Length = 587

 Score =  322 bits (826), Expect(2) = e-133
 Identities = 158/196 (80%), Positives = 172/196 (87%)
 Frame = -2

Query: 591 DFWNKYFKAEYLHSTKNXXXXXXXXXXXXXXAVFLKDDEILEIEARKKVRRVDPSLDMEA 412
           DFWNKYFKAEYLHSTKN              AVFLKDDEILEIEARKKVRRVDP+LDMEA
Sbjct: 227 DFWNKYFKAEYLHSTKNAVAAAAEAAEDEDLAVFLKDDEILEIEARKKVRRVDPTLDMEA 286

Query: 411 DQGDDYTHLPDHGIFRDGSKEISEAQHLLYRRTLLQDLNRQSEVVLEGKTLDMEMEHPRT 232
           DQGDDYTHLPDHGIFRDGSK+ISEAQ+ LY+RTLLQDLNRQ  VVLEGKTLDMEMEHPRT
Sbjct: 287 DQGDDYTHLPDHGIFRDGSKDISEAQNSLYKRTLLQDLNRQGAVVLEGKTLDMEMEHPRT 346

Query: 231 VAEVLARRKQESDGVMEEERRNRISKMTQIEDLQSQDDHPFAPLCIKDPRDYFDSQQVNA 52
           VAE+LARRKQE DGV++EER+NRISKMT I+DLQ+QD+HP+APLCIKDPRDYFD QQ NA
Sbjct: 347 VAEILARRKQECDGVVDEERQNRISKMTLIDDLQAQDNHPYAPLCIKDPRDYFDFQQANA 406

Query: 51  VKTLDDSLAGKEQIRC 4
           VKTLDDS  G EQ++C
Sbjct: 407 VKTLDDSQTGMEQMKC 422



 Score =  181 bits (459), Expect(2) = e-133
 Identities = 91/111 (81%), Positives = 98/111 (88%)
 Frame = -3

Query: 926 LNPECHFSRAKLLQEDSKLQKLHMELVASGKLTESEFWATKKKLLDQDESRKSKQRTGFK 747
           L+P     + KLLQEDSKLQ+LH ELVASGKLTESEFWATKKK+LDQDESRK KQ+ GFK
Sbjct: 115 LSPAEMALKIKLLQEDSKLQRLHKELVASGKLTESEFWATKKKMLDQDESRKLKQQIGFK 174

Query: 746 NSLIFDTKPTSDGRINQVKFQLTPEIKYQIFTLKPAVHQAFLKFVPSKLSE 594
           NSLIFDTKP SDGRINQVKFQLTPEIKYQIF LKPAVHQAFL FVP K++E
Sbjct: 175 NSLIFDTKPMSDGRINQVKFQLTPEIKYQIFALKPAVHQAFLNFVPRKMNE 225


>ref|XP_003535467.1| PREDICTED: probable RNA polymerase II transcription factor B
           subunit 1-1-like [Glycine max]
          Length = 604

 Score =  315 bits (806), Expect(2) = e-133
 Identities = 158/196 (80%), Positives = 169/196 (86%)
 Frame = -2

Query: 591 DFWNKYFKAEYLHSTKNXXXXXXXXXXXXXXAVFLKDDEILEIEARKKVRRVDPSLDMEA 412
           DFWNKYFKAEYLHSTKN              AVFLKDDEILEIEARKKVRRVDP+LDMEA
Sbjct: 250 DFWNKYFKAEYLHSTKNAVAAAAEAAEDEDLAVFLKDDEILEIEARKKVRRVDPTLDMEA 309

Query: 411 DQGDDYTHLPDHGIFRDGSKEISEAQHLLYRRTLLQDLNRQSEVVLEGKTLDMEMEHPRT 232
           DQGDDYTHLPDHGIFRDGSK+ISEAQ+ LY+RTLLQDLNRQ  VVLEGKTLDMEMEHPRT
Sbjct: 310 DQGDDYTHLPDHGIFRDGSKDISEAQNSLYKRTLLQDLNRQGAVVLEGKTLDMEMEHPRT 369

Query: 231 VAEVLARRKQESDGVMEEERRNRISKMTQIEDLQSQDDHPFAPLCIKDPRDYFDSQQVNA 52
           VAE+LARRKQ      +EERRNRISKMT IEDLQ+QD+HP+APLCIKDPRDYFDSQQ NA
Sbjct: 370 VAEILARRKQ------DEERRNRISKMTPIEDLQAQDNHPYAPLCIKDPRDYFDSQQANA 423

Query: 51  VKTLDDSLAGKEQIRC 4
           VKTLDDS AG EQ++C
Sbjct: 424 VKTLDDSQAGMEQMKC 439



 Score =  186 bits (473), Expect(2) = e-133
 Identities = 95/111 (85%), Positives = 99/111 (89%)
 Frame = -3

Query: 926 LNPECHFSRAKLLQEDSKLQKLHMELVASGKLTESEFWATKKKLLDQDESRKSKQRTGFK 747
           L+P     R KLLQEDSKLQ+LH ELVASGKLTESEFWATKKKLLDQDESRK KQR GFK
Sbjct: 138 LSPAEMALRIKLLQEDSKLQRLHKELVASGKLTESEFWATKKKLLDQDESRKLKQRIGFK 197

Query: 746 NSLIFDTKPTSDGRINQVKFQLTPEIKYQIFTLKPAVHQAFLKFVPSKLSE 594
           NSLIFDTKP SDGRINQVKFQLTPEIKYQIF LKPAVHQAFL FVPSK++E
Sbjct: 198 NSLIFDTKPMSDGRINQVKFQLTPEIKYQIFALKPAVHQAFLNFVPSKMNE 248


>ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B
           subunit 1-1 [Vitis vinifera]
           gi|296090002|emb|CBI39821.3| unnamed protein product
           [Vitis vinifera]
          Length = 602

 Score =  252 bits (643), Expect(2) = e-100
 Identities = 128/202 (63%), Positives = 152/202 (75%), Gaps = 6/202 (2%)
 Frame = -2

Query: 591 DFWNKYFKAEYLHSTKNXXXXXXXXXXXXXXAVFLKDDEILEIEARKKVRRVDPSLDMEA 412
           DFWNKY +AEYLH T+N              AVFLK D+IL  EAR+K+RRVDP+LDMEA
Sbjct: 235 DFWNKYCRAEYLHCTRNTVAAAAEAAEDEELAVFLKHDDILANEARRKIRRVDPTLDMEA 294

Query: 411 DQGDDYTHLPDHGIFRDGSKEISEAQHLLYRRTLLQDLNRQSEVVLEGKTLDMEMEHPRT 232
           DQGDDY HLPDHGIFRDGSKEI + Q+  YRRTL QDLNR + VVLEG+ +D+E+E  RT
Sbjct: 295 DQGDDYMHLPDHGIFRDGSKEIIDPQYEQYRRTLSQDLNRHAAVVLEGRPIDVELEDTRT 354

Query: 231 VAEVLARRK------QESDGVMEEERRNRISKMTQIEDLQSQDDHPFAPLCIKDPRDYFD 70
           VAE LA+ K      ++SDG +  ER  RIS+MT+IEDLQ+  D PFA LCIKDPRDYFD
Sbjct: 355 VAEALAKSKRVEAANEKSDGSVTRERLERISRMTEIEDLQAPRDLPFAALCIKDPRDYFD 414

Query: 69  SQQVNAVKTLDDSLAGKEQIRC 4
           SQQ NA+KTL D+LAG +QI+C
Sbjct: 415 SQQANALKTLGDTLAGSKQIKC 436



 Score =  141 bits (356), Expect(2) = e-100
 Identities = 69/104 (66%), Positives = 85/104 (81%)
 Frame = -3

Query: 902 RAKLLQEDSKLQKLHMELVASGKLTESEFWATKKKLLDQDESRKSKQRTGFKNSLIFDTK 723
           R KLL+EDS+LQKLH + V SG LTE+EFWAT+KKLLD + SR SKQR GFK+++I D K
Sbjct: 131 RIKLLREDSELQKLHKQFVLSGVLTEAEFWATRKKLLDGNTSRTSKQRVGFKSAMISDLK 190

Query: 722 PTSDGRINQVKFQLTPEIKYQIFTLKPAVHQAFLKFVPSKLSEE 591
           P +DGR N+V F LTPEI +QIF  KPAVHQAFL FVP+K++E+
Sbjct: 191 PLTDGRTNRVTFNLTPEIIHQIFAEKPAVHQAFLNFVPNKMTEK 234


>emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]
          Length = 735

 Score =  252 bits (644), Expect(2) = 1e-97
 Identities = 128/202 (63%), Positives = 152/202 (75%), Gaps = 6/202 (2%)
 Frame = -2

Query: 591 DFWNKYFKAEYLHSTKNXXXXXXXXXXXXXXAVFLKDDEILEIEARKKVRRVDPSLDMEA 412
           DFWNKY +AEYLH T+N              AVFLK D+IL  EAR+K+RRVDP+LDMEA
Sbjct: 278 DFWNKYCRAEYLHCTRNTVAAAAEAAEDEELAVFLKHDDILASEARRKIRRVDPTLDMEA 337

Query: 411 DQGDDYTHLPDHGIFRDGSKEISEAQHLLYRRTLLQDLNRQSEVVLEGKTLDMEMEHPRT 232
           DQGDDY HLPDHGIFRDGSKEI + Q+  YRRTL QDLNR + VVLEG+ +D+E+E  RT
Sbjct: 338 DQGDDYMHLPDHGIFRDGSKEIIDPQYEQYRRTLSQDLNRHAAVVLEGRPIDVELEDTRT 397

Query: 231 VAEVLARRK------QESDGVMEEERRNRISKMTQIEDLQSQDDHPFAPLCIKDPRDYFD 70
           VAE LA+ K      ++SDG +  ER  RIS+MT+IEDLQ+  D PFA LCIKDPRDYFD
Sbjct: 398 VAEALAKSKRVEAANEKSDGSVTRERLERISRMTEIEDLQAPRDLPFAALCIKDPRDYFD 457

Query: 69  SQQVNAVKTLDDSLAGKEQIRC 4
           SQQ NA+KTL D+LAG +QI+C
Sbjct: 458 SQQANALKTLGDTLAGSKQIKC 479



 Score =  131 bits (329), Expect(2) = 1e-97
 Identities = 64/103 (62%), Positives = 82/103 (79%)
 Frame = -3

Query: 899 AKLLQEDSKLQKLHMELVASGKLTESEFWATKKKLLDQDESRKSKQRTGFKNSLIFDTKP 720
           +K+  + S+LQKLH + V SG LTE+EFWAT+KKLLD + SR SKQR GFK+++I D KP
Sbjct: 175 SKVKWDCSELQKLHKQFVLSGVLTEAEFWATRKKLLDGNTSRTSKQRVGFKSAMISDLKP 234

Query: 719 TSDGRINQVKFQLTPEIKYQIFTLKPAVHQAFLKFVPSKLSEE 591
            +DGR N+V F LTPEI +QIF  KPAVHQAFL FVP+K++E+
Sbjct: 235 LTDGRTNRVTFNLTPEIIHQIFAEKPAVHQAFLNFVPNKMTEK 277