BLASTX nr result
ID: Glycyrrhiza24_contig00012967
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza24_contig00012967
(819 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003554352.1| PREDICTED: pentatricopeptide repeat-containi... 500 e-139
ref|XP_003625566.1| Pentatricopeptide repeat-containing protein ... 488 e-136
ref|XP_002273255.1| PREDICTED: pentatricopeptide repeat-containi... 402 e-110
ref|XP_002326162.1| predicted protein [Populus trichocarpa] gi|2... 378 e-103
ref|XP_002525196.1| pentatricopeptide repeat-containing protein,... 370 e-100
>ref|XP_003554352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
chloroplastic-like [Glycine max]
Length = 811
Score = 500 bits (1288), Expect = e-139
Identities = 239/272 (87%), Positives = 253/272 (93%)
Frame = -3
Query: 817 LINACAHAGLVEQAIQLFEEMLLAGCEPNTQCFNIILHACVEACQYDRAFRFFHSWKGNK 638
LINACAHAGLVEQAIQLFEEMLLAGCEPNTQCFNIIL+ACVEA QYDRAFRFFHSWKG K
Sbjct: 375 LINACAHAGLVEQAIQLFEEMLLAGCEPNTQCFNIILNACVEAYQYDRAFRFFHSWKGKK 434
Query: 637 MLGSFGESYNSNLEQGGMHKTTTVPNGISNSHILSFTKRFPFTPTTSTYNILLKACGTDY 458
MLGS GE YNSN+ QG MH T++PNGISNSHIL+F +RFPFTPTT+TYNILLKACGTDY
Sbjct: 435 MLGSSGEGYNSNIGQGHMHDVTSIPNGISNSHILNFAERFPFTPTTTTYNILLKACGTDY 494
Query: 457 YHAKALINEMKTVGLSPNQISWSILIDTCGGSENVEGAIEILRTMVDAGIKPDVVAYTTA 278
YHAKALI EM+TVGLSPNQISWSILID CG S NVEGAIEIL+TM DAGIKPDV+AYTTA
Sbjct: 495 YHAKALIKEMETVGLSPNQISWSILIDICGASSNVEGAIEILKTMGDAGIKPDVIAYTTA 554
Query: 277 IKVCVESKNFKQALTLYEEMKSYEIHPNWVTYNTLLKARSKYGSVHEVQQCLAIYQDMRK 98
IKVCVESKNF QALTLYEEMK Y+I PNWVTYNTLLKARSKYG +HEVQQCLAIYQDMRK
Sbjct: 555 IKVCVESKNFMQALTLYEEMKCYQIRPNWVTYNTLLKARSKYGFLHEVQQCLAIYQDMRK 614
Query: 97 AGYKPNDYYLEELIEEWCEGVIQDNREYEGEF 2
AGYKPNDYYLEELIEEWCEGVIQ+NRE +GEF
Sbjct: 615 AGYKPNDYYLEELIEEWCEGVIQNNREKQGEF 646
Score = 66.2 bits (160), Expect = 8e-09
Identities = 43/148 (29%), Positives = 77/148 (52%), Gaps = 4/148 (2%)
Frame = -3
Query: 511 TPTTSTYNILLKACGTDYYHAKALINEMKTVGLSPNQISWSILIDTCGGSENVEGAIEIL 332
TP +N L+ D + L M+ +GL P+ S++IL+ C + V+ A +I
Sbjct: 259 TPNIYVFNSLMNVNSHDLSYTLNLYQNMQNLGLKPDMTSYNILLKACCVAGRVDLAQDIY 318
Query: 331 RTMVD----AGIKPDVVAYTTAIKVCVESKNFKQALTLYEEMKSYEIHPNWVTYNTLLKA 164
R + +K DV Y+T IKV + K ++ AL + ++M S + N V +++L+ A
Sbjct: 319 RELKHLESVGQLKLDVFTYSTIIKVFADVKLWQMALKIKQDMLSAGVSLNIVAWSSLINA 378
Query: 163 RSKYGSVHEVQQCLAIYQDMRKAGYKPN 80
+ G V+Q + ++++M AG +PN
Sbjct: 379 CAHAGL---VEQAIQLFEEMLLAGCEPN 403
Score = 58.5 bits (140), Expect = 2e-06
Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 16/145 (11%)
Frame = -3
Query: 550 NSHILSFT-------KRFPFTPTTSTYNILLKAC--------GTDYYHAKALINEMKTVG 416
NSH LS+T + P ++YNILLKAC D Y + +++VG
Sbjct: 272 NSHDLSYTLNLYQNMQNLGLKPDMTSYNILLKACCVAGRVDLAQDIYRE---LKHLESVG 328
Query: 415 -LSPNQISWSILIDTCGGSENVEGAIEILRTMVDAGIKPDVVAYTTAIKVCVESKNFKQA 239
L + ++S +I + + A++I + M+ AG+ ++VA+++ I C + +QA
Sbjct: 329 QLKLDVFTYSTIIKVFADVKLWQMALKIKQDMLSAGVSLNIVAWSSLINACAHAGLVEQA 388
Query: 238 LTLYEEMKSYEIHPNWVTYNTLLKA 164
+ L+EEM PN +N +L A
Sbjct: 389 IQLFEEMLLAGCEPNTQCFNIILNA 413
>ref|XP_003625566.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500581|gb|AES81784.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 829
Score = 488 bits (1256), Expect = e-136
Identities = 236/271 (87%), Positives = 248/271 (91%)
Frame = -3
Query: 817 LINACAHAGLVEQAIQLFEEMLLAGCEPNTQCFNIILHACVEACQYDRAFRFFHSWKGNK 638
LINACAHAGLVEQAIQLFEEMLLAGCEPNTQCFNIILHACVE CQYDRAFR FHSWKG+K
Sbjct: 363 LINACAHAGLVEQAIQLFEEMLLAGCEPNTQCFNIILHACVEGCQYDRAFRLFHSWKGSK 422
Query: 637 MLGSFGESYNSNLEQGGMHKTTTVPNGISNSHILSFTKRFPFTPTTSTYNILLKACGTDY 458
ML ES NSN EQGGMH TTVP GIS+SHILSFT+RFPFTPTT+TYNILLKACGT+Y
Sbjct: 423 MLVPLDESCNSNSEQGGMHNVTTVPTGISSSHILSFTERFPFTPTTTTYNILLKACGTNY 482
Query: 457 YHAKALINEMKTVGLSPNQISWSILIDTCGGSENVEGAIEILRTMVDAGIKPDVVAYTTA 278
YHAKALINEM+TVGLSPNQISWSILI+ CG SENV+G IEILRTMVDAGIKPDV++YTTA
Sbjct: 483 YHAKALINEMRTVGLSPNQISWSILINICGASENVDGVIEILRTMVDAGIKPDVISYTTA 542
Query: 277 IKVCVESKNFKQALTLYEEMKSYEIHPNWVTYNTLLKARSKYGSVHEVQQCLAIYQDMRK 98
IKVCVESKNF QALTLY EMKSY HPN VTYNTLL+ARSKYGS+ EVQQ LAIYQDMRK
Sbjct: 543 IKVCVESKNFTQALTLYREMKSYGTHPNLVTYNTLLRARSKYGSLREVQQGLAIYQDMRK 602
Query: 97 AGYKPNDYYLEELIEEWCEGVIQDNREYEGE 5
AGYK NDYYLEELIEEWCEGVIQDN EYEGE
Sbjct: 603 AGYKSNDYYLEELIEEWCEGVIQDNEEYEGE 633
Score = 67.8 bits (164), Expect = 3e-09
Identities = 44/166 (26%), Positives = 83/166 (50%), Gaps = 4/166 (2%)
Frame = -3
Query: 511 TPTTSTYNILLKACGTDYYHAKALINEMKTVGLSPNQISWSILIDTCGGSENVEGAIEIL 332
TP +N L+ D ++ L M+ +GL P+ S++IL+ C + V+ A ++
Sbjct: 247 TPNIYVFNSLMNVNAHDLSYSLNLYQNMQKLGLKPDMASYNILLKACCVAGRVDVAQDMY 306
Query: 331 RTMVD----AGIKPDVVAYTTAIKVCVESKNFKQALTLYEEMKSYEIHPNWVTYNTLLKA 164
R + +K DV Y+T IKV ++K ++ AL + +M S + N + +++L+ A
Sbjct: 307 RDLKHLESVGQLKLDVFTYSTIIKVFADAKLWQMALKIKRDMLSAGVSLNTIAWSSLINA 366
Query: 163 RSKYGSVHEVQQCLAIYQDMRKAGYKPNDYYLEELIEEWCEGVIQD 26
+ G V+Q + ++++M AG +PN ++ EG D
Sbjct: 367 CAHAGL---VEQAIQLFEEMLLAGCEPNTQCFNIILHACVEGCQYD 409
Score = 57.0 bits (136), Expect = 5e-06
Identities = 40/145 (27%), Positives = 73/145 (50%), Gaps = 16/145 (11%)
Frame = -3
Query: 550 NSHILSFT-------KRFPFTPTTSTYNILLKAC--------GTDYYHAKALINEMKTVG 416
N+H LS++ ++ P ++YNILLKAC D Y + +++VG
Sbjct: 260 NAHDLSYSLNLYQNMQKLGLKPDMASYNILLKACCVAGRVDVAQDMYRD---LKHLESVG 316
Query: 415 -LSPNQISWSILIDTCGGSENVEGAIEILRTMVDAGIKPDVVAYTTAIKVCVESKNFKQA 239
L + ++S +I ++ + A++I R M+ AG+ + +A+++ I C + +QA
Sbjct: 317 QLKLDVFTYSTIIKVFADAKLWQMALKIKRDMLSAGVSLNTIAWSSLINACAHAGLVEQA 376
Query: 238 LTLYEEMKSYEIHPNWVTYNTLLKA 164
+ L+EEM PN +N +L A
Sbjct: 377 IQLFEEMLLAGCEPNTQCFNIILHA 401
>ref|XP_002273255.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
chloroplastic [Vitis vinifera]
gi|297741486|emb|CBI32618.3| unnamed protein product
[Vitis vinifera]
Length = 842
Score = 402 bits (1034), Expect = e-110
Identities = 194/275 (70%), Positives = 229/275 (83%), Gaps = 3/275 (1%)
Frame = -3
Query: 817 LINACAHAGLVEQAIQLFEEMLLAGCEPNTQCFNIILHACVEACQYDRAFRFFHSWKGNK 638
LI++CA+AG+ EQAIQLF+EMLLAGCEPN+QC+NI+LHACVEACQYDRAFR F SWK ++
Sbjct: 393 LISSCANAGITEQAIQLFKEMLLAGCEPNSQCYNILLHACVEACQYDRAFRLFQSWKDSR 452
Query: 637 MLGSFGESYNSN---LEQGGMHKTTTVPNGISNSHILSFTKRFPFTPTTSTYNILLKACG 467
G + N N +E + T++PN +SNSH LSF+K FPFTPTT+TYNIL+KACG
Sbjct: 453 FQEISGGTGNGNTVGVELKHQNCITSMPNCLSNSHHLSFSKSFPFTPTTTTYNILMKACG 512
Query: 466 TDYYHAKALINEMKTVGLSPNQISWSILIDTCGGSENVEGAIEILRTMVDAGIKPDVVAY 287
TDYY AKAL++EMKT GLSPN ISWSILID CGG+ N+ GA+ IL+TM +AGIKPDVVAY
Sbjct: 513 TDYYRAKALMDEMKTAGLSPNHISWSILIDICGGTGNIVGAVRILKTMREAGIKPDVVAY 572
Query: 286 TTAIKVCVESKNFKQALTLYEEMKSYEIHPNWVTYNTLLKARSKYGSVHEVQQCLAIYQD 107
TTAIK CVESKN K A +L+ EMK Y+I PN VTYNTLL+ARS+YGS+HEVQQCLAIYQ
Sbjct: 573 TTAIKYCVESKNLKIAFSLFAEMKRYQIQPNLVTYNTLLRARSRYGSLHEVQQCLAIYQH 632
Query: 106 MRKAGYKPNDYYLEELIEEWCEGVIQDNREYEGEF 2
MRKAGYK NDYYL+ELIEEWCEGVIQDN + +F
Sbjct: 633 MRKAGYKSNDYYLKELIEEWCEGVIQDNNLNQSKF 667
Score = 66.6 bits (161), Expect = 6e-09
Identities = 67/305 (21%), Positives = 117/305 (38%), Gaps = 50/305 (16%)
Frame = -3
Query: 817 LINACAHAGLVEQAIQLFEEMLLAGCEPNTQCFNIILHACVEACQYDRAFRFFHSWKGNK 638
+I+ C +++ ++EE+L PN FN +++ V Y F+ +K +
Sbjct: 251 MIDVCGLCSHYQKSRYIYEELLAQKITPNIYVFNSLMNVNVHDLSYT-----FNVYKNMQ 305
Query: 637 MLGSFGE--SYNSNLEQ----GGMHKTTTVPNGISNSHILSFTKRFPFTPTTSTYNILLK 476
LG + SYN L+ G + + + N K FT +T I +
Sbjct: 306 NLGVTADMASYNILLKACCVAGRVDLAQEIYREVQNLESNGMLKLDVFTYSTI---IKVF 362
Query: 475 ACGTDYYHAKALINEMKTVGLSPNQISWSILIDTCGGSENVEGAIEILRTMVDAGIKPDV 296
A + A + +M + G+ PN ++WS LI +C + E AI++ + M+ AG +P+
Sbjct: 363 ADAKLWQMALKIKEDMLSAGVIPNTVTWSALISSCANAGITEQAIQLFKEMLLAGCEPNS 422
Query: 295 VAYTTAIKVCVESKNFKQALTLYEE----------------------------------- 221
Y + CVE+ + +A L++
Sbjct: 423 QCYNILLHACVEACQYDRAFRLFQSWKDSRFQEISGGTGNGNTVGVELKHQNCITSMPNC 482
Query: 220 ---------MKSYEIHPNWVTYNTLLKARSKYGSVHEVQQCLAIYQDMRKAGYKPNDYYL 68
KS+ P TYN L+KA + + A+ +M+ AG PN
Sbjct: 483 LSNSHHLSFSKSFPFTPTTTTYNILMKACGT-----DYYRAKALMDEMKTAGLSPNHISW 537
Query: 67 EELIE 53
LI+
Sbjct: 538 SILID 542
Score = 65.9 bits (159), Expect = 1e-08
Identities = 45/166 (27%), Positives = 83/166 (50%), Gaps = 4/166 (2%)
Frame = -3
Query: 511 TPTTSTYNILLKACGTDYYHAKALINEMKTVGLSPNQISWSILIDTCGGSENVEGAIEIL 332
TP +N L+ D + + M+ +G++ + S++IL+ C + V+ A EI
Sbjct: 277 TPNIYVFNSLMNVNVHDLSYTFNVYKNMQNLGVTADMASYNILLKACCVAGRVDLAQEIY 336
Query: 331 RTMVDAG----IKPDVVAYTTAIKVCVESKNFKQALTLYEEMKSYEIHPNWVTYNTLLKA 164
R + + +K DV Y+T IKV ++K ++ AL + E+M S + PN VT++ L+ +
Sbjct: 337 REVQNLESNGMLKLDVFTYSTIIKVFADAKLWQMALKIKEDMLSAGVIPNTVTWSALISS 396
Query: 163 RSKYGSVHEVQQCLAIYQDMRKAGYKPNDYYLEELIEEWCEGVIQD 26
+ G +Q + ++++M AG +PN L+ E D
Sbjct: 397 CANAGI---TEQAIQLFKEMLLAGCEPNSQCYNILLHACVEACQYD 439
>ref|XP_002326162.1| predicted protein [Populus trichocarpa] gi|222833355|gb|EEE71832.1|
predicted protein [Populus trichocarpa]
Length = 828
Score = 378 bits (971), Expect = e-103
Identities = 185/278 (66%), Positives = 226/278 (81%), Gaps = 6/278 (2%)
Frame = -3
Query: 817 LINACAHAGLVEQAIQLFEEMLLAGCEPNTQCFNIILHACVEACQYDRAFRFFHSWKGNK 638
LI+ACA+AGLVEQAIQLFEEMLL+GC+PN+QC NI+LHACV+ACQYDRAFR F WKG++
Sbjct: 405 LISACANAGLVEQAIQLFEEMLLSGCKPNSQCCNILLHACVQACQYDRAFRLFQCWKGSE 464
Query: 637 MLGSFGESYNSN---LEQGGMH---KTTTVPNGISNSHILSFTKRFPFTPTTSTYNILLK 476
F ++ N +E H TT VPN SH L+F K+FPFTPT +TY++L+K
Sbjct: 465 AQEVFHGDHSGNADEIEHAQKHCPNMTTIVPN----SHHLNFIKKFPFTPTPATYHMLMK 520
Query: 475 ACGTDYYHAKALINEMKTVGLSPNQISWSILIDTCGGSENVEGAIEILRTMVDAGIKPDV 296
ACG+DY+ AKAL++EMKTVG+SPN ISWSILID CG S NV GA++IL+ M AG++PDV
Sbjct: 521 ACGSDYHRAKALMDEMKTVGISPNHISWSILIDICGVSGNVSGAVQILKNMRMAGVEPDV 580
Query: 295 VAYTTAIKVCVESKNFKQALTLYEEMKSYEIHPNWVTYNTLLKARSKYGSVHEVQQCLAI 116
VAYTTAIKVCVE+KN K A +L+ EMK +I+PN VTYNTLL+AR++YGS+ EVQQCLAI
Sbjct: 581 VAYTTAIKVCVETKNLKLAFSLFAEMKRCQINPNLVTYNTLLRARTRYGSLREVQQCLAI 640
Query: 115 YQDMRKAGYKPNDYYLEELIEEWCEGVIQDNREYEGEF 2
YQDMRKAGYK NDYYL++LIEEWCEGVIQDN + +G F
Sbjct: 641 YQDMRKAGYKSNDYYLKQLIEEWCEGVIQDNNQIQGGF 678
>ref|XP_002525196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223535493|gb|EEF37162.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 786
Score = 370 bits (949), Expect = e-100
Identities = 182/278 (65%), Positives = 224/278 (80%), Gaps = 6/278 (2%)
Frame = -3
Query: 817 LINACAHAGLVEQAIQLFEEMLLAGCEPNTQCFNIILHACVEACQYDRAFRFFHSWKGNK 638
LI+A A+AGLV+QAI+LFEEMLLAGC PN+ C NI+LHACVEACQYDRAFR F++WKG++
Sbjct: 337 LISASANAGLVDQAIKLFEEMLLAGCVPNSHCCNILLHACVEACQYDRAFRLFNAWKGSE 396
Query: 637 MLGSFGESYNSNLEQ--GGMHKTT----TVPNGISNSHILSFTKRFPFTPTTSTYNILLK 476
+ +F YN ++ MH TVPN SNS LSF K+FPFTP+++TYN L+K
Sbjct: 397 IQNTFTTDYNCPVDDISSAMHACEDYIITVPNLASNSLHLSFLKKFPFTPSSATYNTLMK 456
Query: 475 ACGTDYYHAKALINEMKTVGLSPNQISWSILIDTCGGSENVEGAIEILRTMVDAGIKPDV 296
ACG+DY AKAL++EM+ VGLSPN ISWSILID CG S N+EGAI+IL+ M AGI+PDV
Sbjct: 457 ACGSDYNRAKALMDEMQAVGLSPNHISWSILIDICGSSGNMEGAIQILKNMRMAGIEPDV 516
Query: 295 VAYTTAIKVCVESKNFKQALTLYEEMKSYEIHPNWVTYNTLLKARSKYGSVHEVQQCLAI 116
+AYTTAIKV VESKN K A +L+ EMK Y++ PN VTY+TLL+AR++YGS+ EVQQCLAI
Sbjct: 517 IAYTTAIKVSVESKNLKMAFSLFAEMKRYQLKPNLVTYDTLLRARTRYGSLKEVQQCLAI 576
Query: 115 YQDMRKAGYKPNDYYLEELIEEWCEGVIQDNREYEGEF 2
YQDMRKAGYK ND YL++LIEEWCEGVIQDN + + +F
Sbjct: 577 YQDMRKAGYKSNDNYLKQLIEEWCEGVIQDNDQCQDDF 614
Score = 62.4 bits (150), Expect = 1e-07
Identities = 44/165 (26%), Positives = 82/165 (49%), Gaps = 4/165 (2%)
Frame = -3
Query: 508 PTTSTYNILLKACGTDYYHAKALINEMKTVGLSPNQISWSILIDTCGGSENVEGAIEILR 329
P +N L+ D + + +M+ +G++ + S++IL+ +C + V+ A +I R
Sbjct: 222 PNIFVFNSLMNVNAHDLGYTLHVYKKMQNLGVTADMTSYNILLKSCSLAGKVDLAQDIYR 281
Query: 328 TMVD---AGI-KPDVVAYTTAIKVCVESKNFKQALTLYEEMKSYEIHPNWVTYNTLLKAR 161
AG+ K D Y T IK+ ++K ++ AL + E+M S + PN T+++L+ A
Sbjct: 282 EAKQLELAGLLKLDDFTYCTIIKIFADAKLWQLALKIKEDMLSSGVTPNTFTWSSLISAS 341
Query: 160 SKYGSVHEVQQCLAIYQDMRKAGYKPNDYYLEELIEEWCEGVIQD 26
+ G V Q + ++++M AG PN + L+ E D
Sbjct: 342 ANAGL---VDQAIKLFEEMLLAGCVPNSHCCNILLHACVEACQYD 383