BLASTX nr result
ID: Glycyrrhiza24_contig00012396
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza24_contig00012396
(3222 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Me... 1642 0.0
ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerase D sub... 1641 0.0
ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerase D sub... 1629 0.0
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ... 1436 0.0
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub... 1417 0.0
>ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
gi|355492343|gb|AES73546.1| DNA-directed RNA polymerase
subunit beta [Medicago truncatula]
Length = 1237
Score = 1642 bits (4252), Expect = 0.0
Identities = 828/1056 (78%), Positives = 896/1056 (84%), Gaps = 50/1056 (4%)
Frame = +2
Query: 203 MGHVGSSKDGAXXXXXXXXXXXXXXALLPTNAEILEELGENTVRNFCKKASSKFFEEYGL 382
M H+GSSKD A +NAEIL ELG++ V+ FCKKAS FF++YGL
Sbjct: 1 MEHIGSSKD-ANNTNYTEMDIDLDDDEDQSNAEILNELGDDMVKYFCKKASVMFFDQYGL 59
Query: 383 VSHQINSYNQFLSNGLQNTFDSFGDLTVTPGFDPSKKGDSEHYRYASVKFGKVTLDPPKF 562
+SHQINSYNQF+++GLQ+ FDSFGDLTVTPGFDPSKKG EHYRYA+VKFGKVTL+ PKF
Sbjct: 60 ISHQINSYNQFINSGLQSAFDSFGDLTVTPGFDPSKKGADEHYRYATVKFGKVTLERPKF 119
Query: 563 WCGEGNTQEFKMLPRHARLQRMTYSSKMKVSVNVEVYVPKKVRSDKFKTGKEELIDREIL 742
WCGEGN QE KMLPRHARLQRMTY+SKMKV V+++VYV KKVRSDKFKTGKEE ID++I
Sbjct: 120 WCGEGNAQELKMLPRHARLQRMTYASKMKVDVHIQVYVMKKVRSDKFKTGKEEYIDKDIK 179
Query: 743 NQDNREIIIGRLPVMVKSDLCWMKGAEKGDCEFDHGGYFLIKGAEK-------------- 880
+D REI IGRLPVMVKSDLCWM AEKGDCEFDHGGYFLIKGAEK
Sbjct: 180 WEDTREITIGRLPVMVKSDLCWMSEAEKGDCEFDHGGYFLIKGAEKLWRLLVADFDIADV 239
Query: 881 -----------------------------------IFIAQEQLYIKRLWVLNTPCWTVAH 955
IFIAQEQ+++KRLWV N P W VA
Sbjct: 240 VNGGQYCRFFRHKCATKWSKLQKFGSPPQYAIENTIFIAQEQIFLKRLWVSNIPYWAVAF 299
Query: 956 KSQMKRNRLVIKLVGNSRSEEINNGEKVLTVYFLSVEIPVWILFFALGVSSDKEIVDLID 1135
KSQMKRNR+V+KLV S +E I NGEK+LTVYFLSVEIPVWILFFALGV+SDKEIVDLID
Sbjct: 300 KSQMKRNRMVVKLVEGS-TEGITNGEKLLTVYFLSVEIPVWILFFALGVTSDKEIVDLID 358
Query: 1136 YGSGDARIHNILFASIRDADEKCEGFRMGKTALYYMEEHVKGVQFPPPESIDDCLNMYLF 1315
YG + RI NILFASIR+AD+KCE FR GK AL ++EE VKGVQFPP ESID+C NMY+F
Sbjct: 359 YGEANGRIENILFASIREADDKCEAFRRGKNALLFLEERVKGVQFPPAESIDECFNMYVF 418
Query: 1316 PNIGGLSRKARYLAYMVKVLLLAYTGRRKCDNRDDFRNKRLDLAGELLDRELKVHIAHAR 1495
PN+ GL RKARYLAYMVKVLLLAYTGRRK DNRDDFRNKRL+LAGELL+RE+KVH AHAR
Sbjct: 419 PNVKGLKRKARYLAYMVKVLLLAYTGRRKTDNRDDFRNKRLELAGELLEREIKVHFAHAR 478
Query: 1496 KRMAKALQRDLYGDREVRPIEHYLDASIITNGLQRAFSTGAWTHPYKRMERISGVVATLG 1675
KRM KALQRDLYG+REVR IEHYLDASIITNGLQRAFSTGAWTHP+KRMERISGVVATLG
Sbjct: 479 KRMGKALQRDLYGEREVRQIEHYLDASIITNGLQRAFSTGAWTHPFKRMERISGVVATLG 538
Query: 1676 RTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGL 1855
RTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTG+
Sbjct: 539 RTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGV 598
Query: 1856 VSTNVTESLLPQLFDCGMEELVDDTTTSLSKNDKVFLNGDWVGVCQDSISFVAELRSKRR 2035
VST+VTES+LPQL DCGMEELVDDTTT L K DKVFLNGDWVGVC DSISFVAELR++RR
Sbjct: 599 VSTDVTESILPQLSDCGMEELVDDTTTVLGKKDKVFLNGDWVGVCSDSISFVAELRTRRR 658
Query: 2036 KNELPHQVEIKRDQLQQEVRIYSDAGRILRPLLVVSNLLKIKGSKAEH-SFQSLLENGVI 2212
+NELPHQVEIKRDQ QQEVRI SDAGRILRPLLVVSNLLKIKGSK+EH SFQSLL+NGVI
Sbjct: 659 RNELPHQVEIKRDQCQQEVRILSDAGRILRPLLVVSNLLKIKGSKSEHKSFQSLLDNGVI 718
Query: 2213 ELVGPXXXXXXXTAWGVQYLFGKEGKTSVKYTHCELDMSFLLGLSCSLDPFANHDHARRV 2392
EL+GP TAWGVQYLFGKEGK+SVKYTHCELDMSFLLGLSCSL PFANHDHARRV
Sbjct: 719 ELIGPEEEEDFKTAWGVQYLFGKEGKSSVKYTHCELDMSFLLGLSCSLVPFANHDHARRV 778
Query: 2393 LYQSQKHSSQAIGFSTTNPDIRIDTLSHQLFYPQKPLFRTMTTDCLGKPEYPLGHNRVLP 2572
LYQSQKHSSQAIGF+TTNP+IR+D LSHQLFYPQ+PLF+TMT+DCLGKP Y LG ++V+P
Sbjct: 779 LYQSQKHSSQAIGFATTNPNIRVDALSHQLFYPQRPLFQTMTSDCLGKPGY-LGQSKVVP 837
Query: 2573 KEEFYNGQNAIVAVNVHMGYNQEDSLVMNRASLQRGMFRSEHIRXXXXXXXXXXXXXXXX 2752
K EFYNGQNAIVAVNVH+GYNQEDSLVMNRASLQRGMFRSEHIR
Sbjct: 838 KSEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKAEIENKESSEKRK 897
Query: 2753 XXXDVVMFGKIQSKIGRVDSLDDDGFPYVGANLQSGDIIIGRCAESGADHSVKLKHTERG 2932
D+V FGKIQSKIGRVDSLDDDGFP+VGANLQSGDIIIGRCA+SG DHS+KLKHTERG
Sbjct: 898 KPEDIVNFGKIQSKIGRVDSLDDDGFPFVGANLQSGDIIIGRCADSGTDHSIKLKHTERG 957
Query: 2933 YVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIV 3112
YVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFT+QGIV
Sbjct: 958 YVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTKQGIV 1017
Query: 3113 PDIVINPHAFPSRQTPGQLLEAALGKGIACGGLLRH 3220
PDIVINPHAFPSRQTPGQLLEAALGKGIAC G LR+
Sbjct: 1018 PDIVINPHAFPSRQTPGQLLEAALGKGIACVGSLRN 1053
>ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Glycine
max]
Length = 1205
Score = 1641 bits (4249), Expect = 0.0
Identities = 813/1020 (79%), Positives = 891/1020 (87%), Gaps = 15/1020 (1%)
Frame = +2
Query: 203 MGHVGSSKDGAXXXXXXXXXXXXXXA-----------LLPTNAEILEELGENTVRNFCKK 349
MGHVGSSKDG L PTN+EILEELGE+ V+ +CKK
Sbjct: 1 MGHVGSSKDGTKVGLSAAAMDIDDDDDDDDDDLGDVDLDPTNSEILEELGEDMVKYWCKK 60
Query: 350 ASSKFFEEYGLVSHQINSYNQFLSNGLQNTFDSFGDLTVTPGFDPSKKGDSEHYRYASVK 529
AS FF+EYGL+SHQINS+N F++ GLQNTFDSFGDL VTPGFDPSKKG++EH+RYASVK
Sbjct: 61 ASMLFFDEYGLISHQINSFNHFVAIGLQNTFDSFGDLVVTPGFDPSKKGENEHFRYASVK 120
Query: 530 FGKVTLDPPKFWCGEGNTQEFKMLPRHARLQRMTYSSKMKVSVNVEVYVPKKVRSDKFKT 709
FGKV LD P FW GEGN QEFKMLPRHAR+QRMTY+SK+K+ V V+VYVPKKVRSDKFKT
Sbjct: 121 FGKVKLDKPMFWGGEGNAQEFKMLPRHARIQRMTYASKVKIQVKVQVYVPKKVRSDKFKT 180
Query: 710 GKEELIDREILNQDNREIIIGRLPVMVKSDLCWMKGAEKGDCEFDHGGYFLIKGAEKIFI 889
GKEE +DREI+ +D REIIIGRLPVMVKSDLCWMK AEK D EFDHGGYF++KGAEK FI
Sbjct: 181 GKEEFLDREIMKEDEREIIIGRLPVMVKSDLCWMKDAEKDDDEFDHGGYFIVKGAEKTFI 240
Query: 890 AQEQLYIKRLWVLNTPCWTVAHKSQMKRNRLVIKLVGNSRSEEINNGEKVLTVYFLSVEI 1069
AQEQLY+KRLWV+N+P W +A+KSQMKRNR+VIKLVGNSRSEE+ NG+ LTVYFLSVE+
Sbjct: 241 AQEQLYLKRLWVMNSPGWMIAYKSQMKRNRMVIKLVGNSRSEEVENGDMCLTVYFLSVEV 300
Query: 1070 PVWILFFALGVSSDKEIVDLIDYGSGDARIHNILFASIRDADEKCEGFRMGKTALYYMEE 1249
PVW+LFFALGVSSDKEIVDLI G+ D RI NILFAS+RDADEKC FR + A+ Y+E+
Sbjct: 301 PVWVLFFALGVSSDKEIVDLIGCGNDDVRIQNILFASVRDADEKCGAFRRVRNAVQYLEK 360
Query: 1250 HVKGVQFPPPESIDDCLNMYLFPNIGGLSRKARYLAYMVKVLLLAYTGRRKCDNRDDFRN 1429
VK VQFPP ES+ +CL MY+FP I GL+RKAR+LAYMVK LLLAYTGRRKCDNRDDFRN
Sbjct: 361 CVKSVQFPPSESMQECLEMYVFPGISGLNRKARFLAYMVKGLLLAYTGRRKCDNRDDFRN 420
Query: 1430 KRLDLAGELLDRELKVHIAHARKRMAKALQRDLYGDREVRPIEHYLDASIITNGLQRAFS 1609
KRL+LA ELLDRELKVH+AHARKRMAKALQRDLYGDR+VRPIEHYLDASIITNGLQRAFS
Sbjct: 421 KRLELASELLDRELKVHVAHARKRMAKALQRDLYGDRDVRPIEHYLDASIITNGLQRAFS 480
Query: 1610 TGAWTHPYKRMERISGVVATLGRTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKV 1789
TGAW+HPYKRMERISGVVA +GRTNPLQTMAELRR RQQVQYTGKVGDARYPHPSHWGKV
Sbjct: 481 TGAWSHPYKRMERISGVVANVGRTNPLQTMAELRRARQQVQYTGKVGDARYPHPSHWGKV 540
Query: 1790 CFLSTPDGENCGLVKNLAVTGLVS---TNVTESLLPQLFDCGMEELVDDTTTSLSKNDKV 1960
CFL+TPDGENCGLVKNL+VTGLVS T+VTES+L +L DCGM+ELVDDT+T L DKV
Sbjct: 541 CFLTTPDGENCGLVKNLSVTGLVSTDVTDVTESILLKLVDCGMQELVDDTSTHLGSMDKV 600
Query: 1961 FLNGDWVGVCQDSISFVAELRSKRRKNELPHQVEIKRDQLQQEVRIYSDAGRILRPLLVV 2140
LNGDWVGVC DS SFVAELRS+RR+NELPHQVEIKRDQ Q EVRIYSDAGRILRPLLVV
Sbjct: 601 LLNGDWVGVCPDSSSFVAELRSRRRRNELPHQVEIKRDQSQHEVRIYSDAGRILRPLLVV 660
Query: 2141 SNLLKIKGSKAE-HSFQSLLENGVIELVGPXXXXXXXTAWGVQYLFGKEGKTSVKYTHCE 2317
NLLKIKG K++ +SFQSLL+ GVIEL+GP TAWGV+YLFGKEGK SVKYTHCE
Sbjct: 661 GNLLKIKGFKSDRYSFQSLLDKGVIELIGPEEEEDCCTAWGVEYLFGKEGKRSVKYTHCE 720
Query: 2318 LDMSFLLGLSCSLDPFANHDHARRVLYQSQKHSSQAIGFSTTNPDIRIDTLSHQLFYPQK 2497
LDMSFLLGLSCSL PFANHDHARRVLYQSQKHSSQAIGFSTTNP+IR+DTLSHQL YPQK
Sbjct: 721 LDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTTNPNIRVDTLSHQLHYPQK 780
Query: 2498 PLFRTMTTDCLGKPEYPLGHNRVLPKEEFYNGQNAIVAVNVHMGYNQEDSLVMNRASLQR 2677
PLFRTMT+DCLGKP++ LG +++ PK EFYNGQNAIVAVNVH+GYNQEDSLVMNRASLQR
Sbjct: 781 PLFRTMTSDCLGKPDHSLGQSKIPPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQR 840
Query: 2678 GMFRSEHIRXXXXXXXXXXXXXXXXXXXDVVMFGKIQSKIGRVDSLDDDGFPYVGANLQS 2857
GMFRSEHIR D+V F K+QSKIGRVDSLDDDGFPYVGANLQS
Sbjct: 841 GMFRSEHIRSYKSEIDNKESSDKKRKPEDIVNFAKLQSKIGRVDSLDDDGFPYVGANLQS 900
Query: 2858 GDIIIGRCAESGADHSVKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSS 3037
GDIIIG+CAESGAD+SVKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSS
Sbjct: 901 GDIIIGKCAESGADNSVKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSS 960
Query: 3038 MHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGLLR 3217
MHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGG+L+
Sbjct: 961 MHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILK 1020
>ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Glycine
max]
Length = 1205
Score = 1629 bits (4218), Expect = 0.0
Identities = 812/1020 (79%), Positives = 883/1020 (86%), Gaps = 15/1020 (1%)
Frame = +2
Query: 203 MGHVGSSKDG--------AXXXXXXXXXXXXXXALLPTNAEILEELGENTVRNFCKKASS 358
MGHVGSSKDG A L PTNAEILEELGE+ V+ +CKKAS
Sbjct: 1 MGHVGSSKDGTEAGPSAAAMGIDDDEDIDLGDVDLDPTNAEILEELGEDIVKYWCKKASM 60
Query: 359 KFFEEYGLVSHQINSYNQFLSNGLQNTFDSFGDLTVTPGFDPSKKGDSEHYRYASVKFGK 538
FF EYGL+SHQINS+N F+ GLQ TF+SFGDL VTPGFDPSKKG++EH+RYASVKFG
Sbjct: 61 LFFNEYGLISHQINSFNHFIHTGLQKTFESFGDLVVTPGFDPSKKGENEHFRYASVKFGN 120
Query: 539 VTLDPPKFWCGEGNTQEFKMLPRHARLQRMTYSSKMKVSVNVEVYVPKKVRSDKFKTGKE 718
V LD P FW GEGN QEFKMLPRHAR+QRMTY+SK+K+ V V+VYVPKKVRSDKFKTGK
Sbjct: 121 VKLDKPMFWGGEGNAQEFKMLPRHARIQRMTYASKVKIQVKVQVYVPKKVRSDKFKTGKA 180
Query: 719 ELIDREILNQDNREIIIGRLPVMVKSDLCWMKGAEKGDCEFDHGGYFLIKGAEKIFIAQE 898
E +DRE++ +D REIIIGRLPVMVKSDLCWMK AEK D EFDHGGYF++KGAEK FIAQE
Sbjct: 181 EFLDREVMKEDEREIIIGRLPVMVKSDLCWMKEAEKEDDEFDHGGYFIVKGAEKTFIAQE 240
Query: 899 QLYIKRLWVLNTPCWTVAHKSQMKRNRLVIKLVGNSRSEEINNGEKVLTVYFLSVEIPVW 1078
QLY+KRLWV+N+P W +A+KSQMKRNR+VIKLVGNSR EE+ NG+ L VYFLSVE+PVW
Sbjct: 241 QLYLKRLWVMNSPGWMIAYKSQMKRNRMVIKLVGNSRGEEVENGDMSLAVYFLSVEVPVW 300
Query: 1079 ILFFALGVSSDKEIVDLIDYGSGDARIHNILFASIRDADEKCEGFRMGKTALYYMEEHVK 1258
+LFFALGVSSDKEIVDLI G+ D RI NILFAS+RDADEKC FR G+ A+ Y+E+ VK
Sbjct: 301 VLFFALGVSSDKEIVDLIGCGNDDVRIQNILFASVRDADEKCGAFRRGRHAVQYLEKCVK 360
Query: 1259 GVQFPPPESIDDCLNMYLFPNIGGLSRKARYLAYMVKVLLLAYTGRRKCDNRDDFRNKRL 1438
VQFPP ES+ +CL MY+FP I GL+RKAR+LAYMVK LLLAYTGRRKCDNRDDFRNKRL
Sbjct: 361 SVQFPPSESMQECLEMYVFPGISGLNRKARFLAYMVKGLLLAYTGRRKCDNRDDFRNKRL 420
Query: 1439 DLAGELLDRELKVHIAHARKRMAKALQRDLYGDREVRPIEHYLDASIITNGLQRAFSTGA 1618
+LA ELLDRELKVHIAHARKRMAKALQRDLYGDR+VRPIEHYLDASIITNGLQRAFSTGA
Sbjct: 421 ELASELLDRELKVHIAHARKRMAKALQRDLYGDRDVRPIEHYLDASIITNGLQRAFSTGA 480
Query: 1619 WTHPYKRMERISGVVATLGRTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFL 1798
W+HPYKRMERISGVVA +GRTNPLQTMAELRR RQQVQYTGKVGDARYPHPSHWGKVCFL
Sbjct: 481 WSHPYKRMERISGVVANVGRTNPLQTMAELRRARQQVQYTGKVGDARYPHPSHWGKVCFL 540
Query: 1799 STPDGENCGLVKNLAVTGLVSTN---VTESLLPQLFDCGMEELVDDTTTSLSKNDKVFLN 1969
STPDGENCGLVKNLAVTGLVST+ V+E +LP+L DCGMEELVDDT+T L DKV LN
Sbjct: 541 STPDGENCGLVKNLAVTGLVSTDVSAVSEYILPKLLDCGMEELVDDTSTHLGNKDKVLLN 600
Query: 1970 GDWVGVCQDSISFVAELRSKRRKNELPHQVEIKRDQLQQEVRIYSDAGRILRPLLVVSNL 2149
GDWVGVC DS SFVAELRS+RR+NELPHQVEIKRDQ Q EVRIYSDAGRILRPLLVV NL
Sbjct: 601 GDWVGVCPDSSSFVAELRSRRRRNELPHQVEIKRDQSQHEVRIYSDAGRILRPLLVVGNL 660
Query: 2150 LKIKGSKAE-HSFQSLLENGVIELVGPXXXXXXXTAWGVQYLFGKEGKTSVKYTHCELDM 2326
LKIKG K++ +SFQSLL+ GVIEL+GP TAWGV+YLFGKEGK SVKYTHCELDM
Sbjct: 661 LKIKGFKSDCNSFQSLLDKGVIELIGPEEEEDCCTAWGVEYLFGKEGKRSVKYTHCELDM 720
Query: 2327 SFLLGLSCSLDPFANHDHARRVLYQSQKHSSQAIGFSTTNPDIRIDTLSHQLFYPQKPLF 2506
SFLLGLSCSL PFANHDHARRVLYQSQKHSSQAIGFSTTNP+IR+DTLSHQL YPQKPLF
Sbjct: 721 SFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTTNPNIRVDTLSHQLHYPQKPLF 780
Query: 2507 RTMTTDCLGKPEYPLGHNRVL---PKEEFYNGQNAIVAVNVHMGYNQEDSLVMNRASLQR 2677
RTM +DCLGKP+ LG N++ PK EFYNGQNAIVAVNVH+GYNQEDSLVMNRASLQR
Sbjct: 781 RTMASDCLGKPDNSLGQNKISKIPPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQR 840
Query: 2678 GMFRSEHIRXXXXXXXXXXXXXXXXXXXDVVMFGKIQSKIGRVDSLDDDGFPYVGANLQS 2857
GMFRSEHIR D+V F K+QSKIGRVDSLDDDGFPYVGANLQS
Sbjct: 841 GMFRSEHIRSYKSEIDNKESSDKKRKPEDIVNFAKLQSKIGRVDSLDDDGFPYVGANLQS 900
Query: 2858 GDIIIGRCAESGADHSVKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSS 3037
GDIIIG+ AESGAD+SVKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSS
Sbjct: 901 GDIIIGKGAESGADNSVKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSS 960
Query: 3038 MHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGLLR 3217
MHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGG+LR
Sbjct: 961 MHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILR 1020
>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
subunit, putative [Ricinus communis]
Length = 1203
Score = 1436 bits (3716), Expect = 0.0
Identities = 704/974 (72%), Positives = 815/974 (83%), Gaps = 2/974 (0%)
Frame = +2
Query: 305 LEELGENTVRNFCKKASSKFFEEYGLVSHQINSYNQFLSNGLQNTFDSFGDLTVTPGFDP 484
L ++GE +++FC KA++ FF EYGL+SHQINSYN F++NG+Q FDSFG+L V PG+DP
Sbjct: 51 LTDIGEAKLKDFCNKAATLFFNEYGLISHQINSYNDFINNGIQKAFDSFGELVVEPGYDP 110
Query: 485 SKKGDSEHYRYASVKFGKVTLDPPKFWCGEGNTQEFKMLPRHARLQRMTYSSKMKVSVNV 664
SKKG++E +RYASVKFGKV L+ P FW G E KMLPRHARLQ MTYSSKMKV+V+V
Sbjct: 111 SKKGENE-WRYASVKFGKVALEKPTFWSG---ADEHKMLPRHARLQNMTYSSKMKVNVSV 166
Query: 665 EVYVPKKVRSDKFKTGKEELIDREILNQDNREIIIGRLPVMVKSDLCWMKGAEKGDCEFD 844
EVY K VRSDKFKTGK++ +D+E+LN DNR I IG LPVMVKSDLCWMK AEKGDC+FD
Sbjct: 167 EVYTRKVVRSDKFKTGKDQYVDKEVLNTDNRNITIGSLPVMVKSDLCWMKTAEKGDCDFD 226
Query: 845 HGGYFLIKGAEKIFIAQEQLYIKRLWVLNTPCWTVAHKSQMKRNRLVIKLVGNSRSEEIN 1024
HGGYFLIKGAEK+FIAQEQ+ +KRLW+ N WTV++KS++KRNRL+++LVG S E++
Sbjct: 227 HGGYFLIKGAEKVFIAQEQICLKRLWISNIQGWTVSYKSEIKRNRLIVRLVGLSALEDVK 286
Query: 1025 NGEKVLTVYFLSVEIPVWILFFALGVSSDKEIVDLIDYGSGDARIHNILFASIRDADEKC 1204
+K LTVYFLS EIP+WILFFALGV+SDKE++DLI YGS DARI NI FASI DADEK
Sbjct: 287 AEKKCLTVYFLSTEIPLWILFFALGVTSDKEVIDLIGYGSNDARIVNIFFASIHDADEKT 346
Query: 1205 EGFRMGKTALYYMEEHVKGVQFPPPESIDDCLNMYLFPNIGGLSRKARYLAYMVKVLLLA 1384
EGFR GK AL Y+ ++G +FPP E+ +D +YLFP + L +KAR+L YMVK LL A
Sbjct: 347 EGFRRGKEALEYVVRQIRGTRFPPGEN-EDFFLLYLFPTLHSLRQKARFLGYMVKCLLQA 405
Query: 1385 YTGRRKCDNRDDFRNKRLDLAGELLDRELKVHIAHARKRMAKALQRDLYGDREVRPIEHY 1564
Y G+RKC+N D FRNKR +LA ELL+RELKVHIAHAR+RMAKALQ+DLYGDR+VRPIEHY
Sbjct: 406 YNGQRKCNNWDSFRNKRFELAKELLERELKVHIAHARRRMAKALQKDLYGDRDVRPIEHY 465
Query: 1565 LDASIITNGLQRAFSTGAWTHPYKRMERISGVVATLGRTNPLQTMAELRRTRQQVQYTGK 1744
LDASI+TNGL RAFSTGAW+HPYKRMERISGVVA LGR NPLQTM +LR+TR VQYTGK
Sbjct: 466 LDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTMVDLRKTRYHVQYTGK 525
Query: 1745 VGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGLVSTNVTESLLPQLFDCGMEELVD 1924
VGDAR+PHPSHWG+VCFLSTPDGENCGLVKNLA TGLVS N+ E L+ +L GME++ +
Sbjct: 526 VGDARFPHPSHWGRVCFLSTPDGENCGLVKNLATTGLVSVNILEPLIDKLIARGMEKVPE 585
Query: 1925 DTTTSLSKNDKVFLNGDWVGVCQDSISFVAELRSKRRKNELPHQVEIKRDQLQQEVRIYS 2104
D+ + L + DKVFLNG+WVGVC+DS FVAELR RR+ +LP QVEIKRD+ QQEVRI+S
Sbjct: 586 DSHSDLDEKDKVFLNGEWVGVCEDSRLFVAELRRLRRRKKLPQQVEIKRDEQQQEVRIFS 645
Query: 2105 DAGRILRPLLVVSNLLKIKGSKAEH-SFQSLLENGVIELVGPXXXXXXXTAWGVQYLF-G 2278
DAGRILRPLLVV NL KI+ K + +FQSLL+ G+IE VG TAWG+++L G
Sbjct: 646 DAGRILRPLLVVQNLHKIEAFKGGNCTFQSLLDKGIIEFVGTEEEEDCSTAWGIKFLLSG 705
Query: 2279 KEGKTSVKYTHCELDMSFLLGLSCSLDPFANHDHARRVLYQSQKHSSQAIGFSTTNPDIR 2458
+GK S+KYTHCELDMSFLLGLSC + PFANHDHARRVLYQ+QKHS QAIGF TTNP+IR
Sbjct: 706 VDGKQSLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFPTTNPNIR 765
Query: 2459 IDTLSHQLFYPQKPLFRTMTTDCLGKPEYPLGHNRVLPKEEFYNGQNAIVAVNVHMGYNQ 2638
+DTLSHQL+YPQ+PLFRT+T+DCLGKP GHN ++PK E YNGQNAIVAVNVH+GYNQ
Sbjct: 766 VDTLSHQLYYPQRPLFRTVTSDCLGKPGDTRGHNGIVPKPELYNGQNAIVAVNVHLGYNQ 825
Query: 2639 EDSLVMNRASLQRGMFRSEHIRXXXXXXXXXXXXXXXXXXXDVVMFGKIQSKIGRVDSLD 2818
EDSLVMNRASL+RGMFRSEHIR D V FGKI SKIGRVDSLD
Sbjct: 826 EDSLVMNRASLERGMFRSEHIRSYKADVDNKELLDKRRKYDDNVNFGKIPSKIGRVDSLD 885
Query: 2819 DDGFPYVGANLQSGDIIIGRCAESGADHSVKLKHTERGYVQKVVLSSNDEGKNFAVVSLR 2998
DDGFP++GANLQSGDI+IGRCAESG DHS+KLKHTERG VQKVVLSSNDEGKNFAVVSLR
Sbjct: 886 DDGFPFIGANLQSGDIVIGRCAESGPDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLR 945
Query: 2999 QVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEA 3178
QVRSP LGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPH+FPSRQTPGQLLEA
Sbjct: 946 QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHSFPSRQTPGQLLEA 1005
Query: 3179 ALGKGIACGGLLRH 3220
ALGKGIACGG +++
Sbjct: 1006 ALGKGIACGGSMKY 1019
>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
sativus]
Length = 1197
Score = 1417 bits (3667), Expect = 0.0
Identities = 690/977 (70%), Positives = 804/977 (82%), Gaps = 5/977 (0%)
Frame = +2
Query: 305 LEELGENTVRNFCKKASSKFFEEYGLVSHQINSYNQFLSNGLQNTFDSFGDLTVTPGFDP 484
+ +LGE +++FCKK+S FF +YGL+SHQINSYN F+ NG+Q FD FGD+ V PG+DP
Sbjct: 40 IHDLGEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDP 99
Query: 485 SKKGDSEHYRYASVKFGKVTLDPPKFWCGEGNTQEFKMLPRHARLQRMTYSSKMKVSVNV 664
SKKGD E +RYA+VKFGKVTLD PKFW G + +E+ MLPRHARLQ MTYSS+MK+++++
Sbjct: 100 SKKGDGE-WRYATVKFGKVTLDKPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISL 158
Query: 665 EVYVPKKVRSDKFKTGKEELIDREILN--QDNREIIIGRLPVMVKSDLCWMKGAEKGDCE 838
E+Y K V SDKFKTGK++ +D+E + DNR++ IGRLPVMV SDLCWMK +K DCE
Sbjct: 159 EIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLCWMKDGQKRDCE 218
Query: 839 FDHGGYFLIKGAEKIFIAQEQLYIKRLWVLNTPCWTVAHKSQMKRNRLVIKLVGNSRSEE 1018
FD GGYFLIKGAEKIFIAQEQ+ ++RLW+ N WTVA++S++KRNRL+I+LV NS+SE+
Sbjct: 219 FDRGGYFLIKGAEKIFIAQEQICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSED 278
Query: 1019 INNGEKVLTVYFLSVEIPVWILFFALGVSSDKEIVDLIDYGSGDARIHNILFASIR--DA 1192
+ + EKVL VYFLS E+PVWILFFALGVSSDKEIVDLIDYG D + NILFAS+R D
Sbjct: 279 LKSKEKVLNVYFLSTEVPVWILFFALGVSSDKEIVDLIDYGRDDPTVLNILFASVREVDN 338
Query: 1193 DEKCEGFRMGKTALYYMEEHVKGVQFPPPESIDDCLNMYLFPNIGGLSRKARYLAYMVKV 1372
D+K + FR GK AL +++ ++ FPP + I+DCLN+YLF ++ G +K +L YMVK
Sbjct: 339 DDKWKDFRRGKRALTFLDNEIRKTSFPPADKIEDCLNLYLFASLKGSKQKCHFLGYMVKC 398
Query: 1373 LLLAYTGRRKCDNRDDFRNKRLDLAGELLDRELKVHIAHARKRMAKALQRDLYGDREVRP 1552
LL AYTGRRKCDNRDDFRNKR +LA ELL+RELKVHIAHAR+RM KALQRDLYGDR+V P
Sbjct: 399 LLQAYTGRRKCDNRDDFRNKRFELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVHP 458
Query: 1553 IEHYLDASIITNGLQRAFSTGAWTHPYKRMERISGVVATLGRTNPLQTMAELRRTRQQVQ 1732
IEHYLDASIITNGL RAFSTGAW H +KRMERISGVVATLGR NPLQTMAELRRTRQQV
Sbjct: 459 IEHYLDASIITNGLSRAFSTGAWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVA 518
Query: 1733 YTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGLVSTNVTESLLPQLFDCGME 1912
YTGKVGDARYPHPSHWG+VCFLSTPDGENCGL+KNL+ TGLVS N +S+ P LF CGME
Sbjct: 519 YTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKNLSGTGLVSLNTKKSITPTLFRCGME 578
Query: 1913 ELVDDTTTSLSKNDKVFLNGDWVGVCQDSISFVAELRSKRRKNELPHQVEIKRDQLQQEV 2092
LVD+T+TS ++FL+G+WVGVC+DS+SFV +R KRR+N HQVE+KRD+ +EV
Sbjct: 579 NLVDNTSTSFCGKYRIFLDGEWVGVCEDSLSFVTNVRRKRRRNPFLHQVEVKRDEQLKEV 638
Query: 2093 RIYSDAGRILRPLLVVSNLLKIKGSKAE-HSFQSLLENGVIELVGPXXXXXXXTAWGVQY 2269
RI+SDAGRILRPLLVV NL +I SK E ++FQSLL+ G+IEL+G AW +++
Sbjct: 639 RIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAWSIKH 698
Query: 2270 LFGKEGKTSVKYTHCELDMSFLLGLSCSLDPFANHDHARRVLYQSQKHSSQAIGFSTTNP 2449
L EG T KY+HCELDMSFLLGLSC L PFANHDHARR L+QSQKHS+QAIGFS TN
Sbjct: 699 LMEDEGTT--KYSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAIGFSPTNS 756
Query: 2450 DIRIDTLSHQLFYPQKPLFRTMTTDCLGKPEYPLGHNRVLPKEEFYNGQNAIVAVNVHMG 2629
+ R+DTLSHQL YPQ+PLFRTMT DCLG P Y H +LPK EFYNGQNAIVAVNVH+G
Sbjct: 757 NFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHAGILPKPEFYNGQNAIVAVNVHLG 816
Query: 2630 YNQEDSLVMNRASLQRGMFRSEHIRXXXXXXXXXXXXXXXXXXXDVVMFGKIQSKIGRVD 2809
YNQEDSLVMNRASL+RGMFRSEHIR D + FGK QSKIGRVD
Sbjct: 817 YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVD 876
Query: 2810 SLDDDGFPYVGANLQSGDIIIGRCAESGADHSVKLKHTERGYVQKVVLSSNDEGKNFAVV 2989
SLDDDGFPY+GANLQSGDI+IGRCAESGADHS+KLKHTE+G VQKVVLSSND+GKN+AVV
Sbjct: 877 SLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVV 936
Query: 2990 SLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQL 3169
SLRQVRSP LGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQTPGQL
Sbjct: 937 SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQL 996
Query: 3170 LEAALGKGIACGGLLRH 3220
LEAALGKGIA GG L++
Sbjct: 997 LEAALGKGIAAGGSLKY 1013