BLASTX nr result

ID: Glycyrrhiza24_contig00012062 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00012062
         (537 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003552963.1| PREDICTED: pentatricopeptide repeat-containi...   179   3e-43
ref|XP_003538401.1| PREDICTED: pentatricopeptide repeat-containi...   176   2e-42
emb|CBI33534.3| unnamed protein product [Vitis vinifera]              151   5e-35
ref|XP_002272930.1| PREDICTED: pentatricopeptide repeat-containi...   151   5e-35
ref|XP_002532468.1| pentatricopeptide repeat-containing protein,...   150   2e-34

>ref|XP_003552963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Glycine max]
          Length = 485

 Score =  179 bits (453), Expect = 3e-43
 Identities = 89/117 (76%), Positives = 102/117 (87%)
 Frame = -3

Query: 535 EASRLFAEMVKNECVPDQPNCDAAVGIYLDNGDPFMAIKVWKCLVEKYREDLEDTANLLV 356
           EAS +FAEMVKNECVP+Q NCDAAV  Y+D G+P MAIKVWK LVE Y++DLE TAN LV
Sbjct: 369 EASVVFAEMVKNECVPEQDNCDAAVKAYVDCGEPVMAIKVWKYLVENYKKDLERTANFLV 428

Query: 355 VGLRDNNRVPEAVKYAEDMIGRGIRLSTSTLSKLRQGLVKERKEFVYEELLRKWKSH 185
           VGLRD NR+PEAVKYAEDMI R IRLS++T+SKLRQ L+KER+EFVYE+LLRK KSH
Sbjct: 429 VGLRDLNRLPEAVKYAEDMIDREIRLSSNTMSKLRQSLIKERREFVYEDLLRKSKSH 485


>ref|XP_003538401.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Glycine max]
          Length = 486

 Score =  176 bits (447), Expect = 2e-42
 Identities = 87/117 (74%), Positives = 99/117 (84%)
 Frame = -3

Query: 535 EASRLFAEMVKNECVPDQPNCDAAVGIYLDNGDPFMAIKVWKCLVEKYREDLEDTANLLV 356
           EAS +FAEMV+NECVP+Q NCD AV  Y+D G+P MAIKVWKCLVE Y++ LE TAN LV
Sbjct: 370 EASSVFAEMVQNECVPEQDNCDLAVKAYVDCGEPVMAIKVWKCLVENYKKGLEQTANFLV 429

Query: 355 VGLRDNNRVPEAVKYAEDMIGRGIRLSTSTLSKLRQGLVKERKEFVYEELLRKWKSH 185
           VGL + NR   AVKYAEDMIGRGI LS+STLSKLRQ LVKER+E+VYE+LLRKWKSH
Sbjct: 430 VGLCNLNRPQVAVKYAEDMIGRGISLSSSTLSKLRQSLVKERREYVYEDLLRKWKSH 486


>emb|CBI33534.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  151 bits (382), Expect = 5e-35
 Identities = 74/116 (63%), Positives = 94/116 (81%)
 Frame = -3

Query: 535 EASRLFAEMVKNECVPDQPNCDAAVGIYLDNGDPFMAIKVWKCLVEKYREDLEDTANLLV 356
           EA  +F+EMV+NECVPD  NC+AAV IYLD GD + AIKVWK ++E +   LE+T NLLV
Sbjct: 390 EAFSIFSEMVQNECVPDLTNCNAAVRIYLDLGDVYKAIKVWKYIIENHDSGLEETGNLLV 449

Query: 355 VGLRDNNRVPEAVKYAEDMIGRGIRLSTSTLSKLRQGLVKERKEFVYEELLRKWKS 188
            GLRD++R+PEAVKYA+DMI RGI+L++STLSKL+  LV+  K  VY+ELLRKWK+
Sbjct: 450 TGLRDHDRIPEAVKYAKDMIVRGIKLTSSTLSKLKHALVEVGKGPVYDELLRKWKT 505


>ref|XP_002272930.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Vitis vinifera]
          Length = 502

 Score =  151 bits (382), Expect = 5e-35
 Identities = 74/116 (63%), Positives = 94/116 (81%)
 Frame = -3

Query: 535 EASRLFAEMVKNECVPDQPNCDAAVGIYLDNGDPFMAIKVWKCLVEKYREDLEDTANLLV 356
           EA  +F+EMV+NECVPD  NC+AAV IYLD GD + AIKVWK ++E +   LE+T NLLV
Sbjct: 386 EAFSIFSEMVQNECVPDLTNCNAAVRIYLDLGDVYKAIKVWKYIIENHDSGLEETGNLLV 445

Query: 355 VGLRDNNRVPEAVKYAEDMIGRGIRLSTSTLSKLRQGLVKERKEFVYEELLRKWKS 188
            GLRD++R+PEAVKYA+DMI RGI+L++STLSKL+  LV+  K  VY+ELLRKWK+
Sbjct: 446 TGLRDHDRIPEAVKYAKDMIVRGIKLTSSTLSKLKHALVEVGKGPVYDELLRKWKT 501


>ref|XP_002532468.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527826|gb|EEF29924.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 510

 Score =  150 bits (378), Expect = 2e-34
 Identities = 70/116 (60%), Positives = 92/116 (79%)
 Frame = -3

Query: 535 EASRLFAEMVKNECVPDQPNCDAAVGIYLDNGDPFMAIKVWKCLVEKYREDLEDTANLLV 356
           EAS LF EM+KNEC+P+Q NC AAV +++ + DP+MAIKVWKC++E Y  DLE+T NLL+
Sbjct: 394 EASVLFNEMIKNECLPNQANCSAAVRVFMHSKDPYMAIKVWKCMIENYELDLEETGNLLI 453

Query: 355 VGLRDNNRVPEAVKYAEDMIGRGIRLSTSTLSKLRQGLVKERKEFVYEELLRKWKS 188
           V L D +  PEAVKYAE MIG+GI++++ T+ KL+  L + RKEFVYE LLRKWK+
Sbjct: 454 VELCDLHMDPEAVKYAESMIGKGIKVTSPTMEKLKLCLKQARKEFVYERLLRKWKA 509


Top