BLASTX nr result

ID: Glycyrrhiza24_contig00011279 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00011279
         (520 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003597428.1| RNA-binding protein [Medicago truncatula] gi...   307   7e-82
ref|XP_002313332.1| predicted protein [Populus trichocarpa] gi|2...   304   4e-81
ref|XP_002513488.1| nuclear acid binding protein, putative [Rici...   301   5e-80
ref|XP_004164285.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylat...   298   4e-79
ref|XP_004152401.1| PREDICTED: polyadenylate-binding protein RBP...   298   4e-79

>ref|XP_003597428.1| RNA-binding protein [Medicago truncatula]
           gi|355486476|gb|AES67679.1| RNA-binding protein
           [Medicago truncatula]
          Length = 428

 Score =  307 bits (786), Expect = 7e-82
 Identities = 142/155 (91%), Positives = 151/155 (97%)
 Frame = -1

Query: 466 MATGYHQPSSIEEVRTLWIGDLQYWVDENYLTHCFAHTGEVVSIKIIRNKMTGQPEGYGF 287
           MAT YHQP+S+EEVRTLWIGDLQYWVDENYLTHCF+HTGEV+SIKIIRNK+TGQPEGYGF
Sbjct: 1   MATTYHQPASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGF 60

Query: 286 VEFVSHAAAERVLQSYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVT 107
           +EFVSH+AAERVLQ+YNGTQMPGTEQTFRLNWASFGIGERRPDAGP+HSIFVGDLAPDVT
Sbjct: 61  IEFVSHSAAERVLQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVT 120

Query: 106 DYLLQETFRAHYPSVRGAKVVTDPNTSRSKGYGFV 2
           DYLLQETFR HY SVRGAKVVTDPNT RSKGYGFV
Sbjct: 121 DYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFV 155


>ref|XP_002313332.1| predicted protein [Populus trichocarpa] gi|222849740|gb|EEE87287.1|
           predicted protein [Populus trichocarpa]
          Length = 415

 Score =  304 bits (779), Expect = 4e-81
 Identities = 141/152 (92%), Positives = 148/152 (97%)
 Frame = -1

Query: 457 GYHQPSSIEEVRTLWIGDLQYWVDENYLTHCFAHTGEVVSIKIIRNKMTGQPEGYGFVEF 278
           GYHQP+++EEVRTLWIGDLQYW DE+YLT CFAHTGEVVSIKIIRNK+TGQPEGYGFVEF
Sbjct: 9   GYHQPATLEEVRTLWIGDLQYWADESYLTSCFAHTGEVVSIKIIRNKLTGQPEGYGFVEF 68

Query: 277 VSHAAAERVLQSYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYL 98
           VSHAAAER+LQ+YNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYL
Sbjct: 69  VSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYL 128

Query: 97  LQETFRAHYPSVRGAKVVTDPNTSRSKGYGFV 2
           LQETFR HYPSVRGAKVVTDPNT RSKGYGFV
Sbjct: 129 LQETFRVHYPSVRGAKVVTDPNTGRSKGYGFV 160


>ref|XP_002513488.1| nuclear acid binding protein, putative [Ricinus communis]
           gi|223547396|gb|EEF48891.1| nuclear acid binding
           protein, putative [Ricinus communis]
          Length = 412

 Score =  301 bits (770), Expect = 5e-80
 Identities = 139/152 (91%), Positives = 149/152 (98%)
 Frame = -1

Query: 457 GYHQPSSIEEVRTLWIGDLQYWVDENYLTHCFAHTGEVVSIKIIRNKMTGQPEGYGFVEF 278
           GYHQP+++EEVRTLWIGDLQYWVDENYL+ CFAHTGEV+SIKIIRNK+TGQPEGYGFVEF
Sbjct: 11  GYHQPATLEEVRTLWIGDLQYWVDENYLSSCFAHTGEVLSIKIIRNKITGQPEGYGFVEF 70

Query: 277 VSHAAAERVLQSYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYL 98
           VSH AAER+LQ+YNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL+PDVTDYL
Sbjct: 71  VSHVAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLSPDVTDYL 130

Query: 97  LQETFRAHYPSVRGAKVVTDPNTSRSKGYGFV 2
           LQETFRA+YPSVRGAKVVTDPNT RSKGYGFV
Sbjct: 131 LQETFRANYPSVRGAKVVTDPNTGRSKGYGFV 162


>ref|XP_004164285.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
           RBP47B'-like [Cucumis sativus]
          Length = 427

 Score =  298 bits (762), Expect = 4e-79
 Identities = 138/151 (91%), Positives = 147/151 (97%)
 Frame = -1

Query: 454 YHQPSSIEEVRTLWIGDLQYWVDENYLTHCFAHTGEVVSIKIIRNKMTGQPEGYGFVEFV 275
           +HQP+++EEVRTLWIGDLQYWVDE+YL  CFAHTGEV+SIKIIRNK+TGQPEGYGFVEFV
Sbjct: 10  HHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVEFV 69

Query: 274 SHAAAERVLQSYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLL 95
           SHAAAER+LQ+YNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLL
Sbjct: 70  SHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLL 129

Query: 94  QETFRAHYPSVRGAKVVTDPNTSRSKGYGFV 2
           QETFRA YPSVRGAKVVTDPNT RSKGYGFV
Sbjct: 130 QETFRAQYPSVRGAKVVTDPNTGRSKGYGFV 160


>ref|XP_004152401.1| PREDICTED: polyadenylate-binding protein RBP47B'-like [Cucumis
           sativus]
          Length = 422

 Score =  298 bits (762), Expect = 4e-79
 Identities = 138/151 (91%), Positives = 147/151 (97%)
 Frame = -1

Query: 454 YHQPSSIEEVRTLWIGDLQYWVDENYLTHCFAHTGEVVSIKIIRNKMTGQPEGYGFVEFV 275
           +HQP+++EEVRTLWIGDLQYWVDE+YL  CFAHTGEV+SIKIIRNK+TGQPEGYGFVEFV
Sbjct: 10  HHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVEFV 69

Query: 274 SHAAAERVLQSYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLL 95
           SHAAAER+LQ+YNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLL
Sbjct: 70  SHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLL 129

Query: 94  QETFRAHYPSVRGAKVVTDPNTSRSKGYGFV 2
           QETFRA YPSVRGAKVVTDPNT RSKGYGFV
Sbjct: 130 QETFRAQYPSVRGAKVVTDPNTGRSKGYGFV 160


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