BLASTX nr result
ID: Glycyrrhiza24_contig00011272
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza24_contig00011272
(242 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containi... 140 8e-32
ref|XP_002313273.1| predicted protein [Populus trichocarpa] gi|2... 130 1e-28
ref|XP_002523547.1| pentatricopeptide repeat-containing protein,... 125 5e-27
ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containi... 123 1e-26
ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containi... 123 1e-26
>ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 813
Score = 140 bits (354), Expect = 8e-32
Identities = 69/80 (86%), Positives = 75/80 (93%)
Frame = -3
Query: 240 CARLGFLNVGKEIHARIIRVGYAFDLFVSNALTDMYSKCGCLNLARNVFNISVKDKVSYN 61
CARLGFLNVGKEIHARIIRVG + DLFVSNALTDMYSKCGCLNLA+NVFNISV+D+VSYN
Sbjct: 453 CARLGFLNVGKEIHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFNISVRDEVSYN 512
Query: 60 ILIIGYSQTSDCSESLNLFS 1
ILIIGYS+T+D ESL LFS
Sbjct: 513 ILIIGYSRTNDSLESLRLFS 532
Score = 70.9 bits (172), Expect = 1e-10
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Frame = -3
Query: 240 CARLGFLNVGKEIHARIIRVGYAFDLFVSNALTDMYSKCGCLNLARNVFN-ISVKDKVSY 64
CA L F+ GKEIH ++R + LFV+N+L D+Y++CG ++LA VF I KD S+
Sbjct: 553 CANLAFIRQGKEIHGLLVRKLFHTHLFVANSLLDLYTRCGRIDLATKVFYCIQNKDVASW 612
Query: 63 NILIIGYSQTSDCSESLNLF 4
N +I+GY + ++NLF
Sbjct: 613 NTMILGYGMRGELDTAINLF 632
>ref|XP_002313273.1| predicted protein [Populus trichocarpa] gi|222849681|gb|EEE87228.1|
predicted protein [Populus trichocarpa]
Length = 680
Score = 130 bits (327), Expect = 1e-28
Identities = 62/79 (78%), Positives = 70/79 (88%)
Frame = -3
Query: 240 CARLGFLNVGKEIHARIIRVGYAFDLFVSNALTDMYSKCGCLNLARNVFNISVKDKVSYN 61
CAR+GFL GKEIHAR IR G + DLFVSNALTDMY+KCGCLNLAR VF IS++D+VSYN
Sbjct: 321 CARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVFKISLRDEVSYN 380
Query: 60 ILIIGYSQTSDCSESLNLF 4
ILIIGYSQT++CSESL LF
Sbjct: 381 ILIIGYSQTTNCSESLRLF 399
Score = 65.1 bits (157), Expect = 6e-09
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = -3
Query: 240 CARLGFLNVGKEIHARIIRVGYAFDLFVSNALTDMYSKCGCLNLARNVF-NISVKDKVSY 64
CA L L GKE+H +R LF++NAL D Y KCG ++LA VF I +D S+
Sbjct: 421 CANLAALKQGKEVHGLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIPSRDTASW 480
Query: 63 NILIIGYSQTSDCSESLNLF 4
N +I+GY + + ++NLF
Sbjct: 481 NSMILGYGMLGELTIAINLF 500
Score = 54.7 bits (130), Expect = 8e-06
Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Frame = -3
Query: 231 LGFLNVGKEIHARIIRVGYAFDLFVSNALTDMYSKCGCLNLARNVFN-ISVKDKVSYNIL 55
L + GKEIH +R G D+FV+NAL DMY+K G A NVFN I K+ VS+N +
Sbjct: 223 LKLFDFGKEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAM 282
Query: 54 IIGYSQ 37
+ ++Q
Sbjct: 283 VANFAQ 288
>ref|XP_002523547.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223537254|gb|EEF38886.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 555
Score = 125 bits (313), Expect = 5e-27
Identities = 60/79 (75%), Positives = 70/79 (88%)
Frame = -3
Query: 240 CARLGFLNVGKEIHARIIRVGYAFDLFVSNALTDMYSKCGCLNLARNVFNISVKDKVSYN 61
CAR+GFL GKEIHAR R+G FD FVSNALTDMY+KCG LNLARNVFNIS++D+VSYN
Sbjct: 324 CARMGFLRPGKEIHARAFRMGCYFDQFVSNALTDMYAKCGFLNLARNVFNISLRDEVSYN 383
Query: 60 ILIIGYSQTSDCSESLNLF 4
ILI+GYSQT++ SESL+LF
Sbjct: 384 ILIVGYSQTTNSSESLSLF 402
Score = 66.2 bits (160), Expect = 3e-09
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Frame = -3
Query: 240 CARLGFLNVGKEIHARIIRVGYAFDLFVSNALTDMYSKCGCLNLARNVF-NISVKDKVSY 64
CA L L G+EIHA ++R +F++N+L D Y+KCG ++LA +F IS KD S+
Sbjct: 424 CASLVALKQGEEIHALVVRKNLHMHIFIANSLLDFYTKCGKIDLACKIFYRISEKDAASW 483
Query: 63 NILIIGYSQTSDCSESLNLF 4
N +I+G + ++NLF
Sbjct: 484 NTIILGVGMLGELEAAINLF 503
>ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 684
Score = 123 bits (309), Expect = 1e-26
Identities = 59/80 (73%), Positives = 67/80 (83%)
Frame = -3
Query: 240 CARLGFLNVGKEIHARIIRVGYAFDLFVSNALTDMYSKCGCLNLARNVFNISVKDKVSYN 61
CARLGFL GKEIHA +R+G DLFVSN+L DMY+KCGCL+ ARNVFN S KD+VSYN
Sbjct: 324 CARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTSRKDEVSYN 383
Query: 60 ILIIGYSQTSDCSESLNLFS 1
ILIIGYS+T DC +SLNLFS
Sbjct: 384 ILIIGYSETDDCLQSLNLFS 403
Score = 64.3 bits (155), Expect = 1e-08
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = -3
Query: 240 CARLGFLNVGKEIHARIIRVGYAFDLFVSNALTDMYSKCGCLNLARNVFN-ISVKDKVSY 64
CA L L GKE+H +R LFVSN+L D Y+KCG +++A +FN I KD S+
Sbjct: 424 CANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASW 483
Query: 63 NILIIGYSQTSDCSESLNLF 4
N +I+GY + ++++F
Sbjct: 484 NTMILGYGMIGELETAISMF 503
>ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 833
Score = 123 bits (309), Expect = 1e-26
Identities = 59/80 (73%), Positives = 67/80 (83%)
Frame = -3
Query: 240 CARLGFLNVGKEIHARIIRVGYAFDLFVSNALTDMYSKCGCLNLARNVFNISVKDKVSYN 61
CARLGFL GKEIHA +R+G DLFVSN+L DMY+KCGCL+ ARNVFN S KD+VSYN
Sbjct: 473 CARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTSRKDEVSYN 532
Query: 60 ILIIGYSQTSDCSESLNLFS 1
ILIIGYS+T DC +SLNLFS
Sbjct: 533 ILIIGYSETDDCLQSLNLFS 552
Score = 64.3 bits (155), Expect = 1e-08
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = -3
Query: 240 CARLGFLNVGKEIHARIIRVGYAFDLFVSNALTDMYSKCGCLNLARNVFN-ISVKDKVSY 64
CA L L GKE+H +R LFVSN+L D Y+KCG +++A +FN I KD S+
Sbjct: 573 CANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASW 632
Query: 63 NILIIGYSQTSDCSESLNLF 4
N +I+GY + ++++F
Sbjct: 633 NTMILGYGMIGELETAISMF 652