BLASTX nr result

ID: Glycyrrhiza24_contig00010765 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00010765
         (596 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003516552.1| PREDICTED: zinc finger CCCH domain-containin...    96   6e-18
ref|XP_003538871.1| PREDICTED: zinc finger CCCH domain-containin...    89   6e-16
ref|XP_003612119.1| Zinc finger CCCH domain-containing protein [...    89   7e-16
ref|XP_003538870.1| PREDICTED: uncharacterized protein LOC100800...    87   2e-15
ref|XP_002267100.2| PREDICTED: zinc finger CCCH domain-containin...    71   2e-10

>ref|XP_003516552.1| PREDICTED: zinc finger CCCH domain-containing protein 44-like
            [Glycine max]
          Length = 1953

 Score = 95.5 bits (236), Expect = 6e-18
 Identities = 47/57 (82%), Positives = 49/57 (85%), Gaps = 3/57 (5%)
 Frame = +3

Query: 435  ERNDGCCVAVLKRKRGRPAKGT--PK-TTPPLRQKKEEEDVCFICFDGGSLVLCDRR 596
            E N GCC +VLKRKRGRPAKG+  PK  TPP RQKKEEEDVCFICFDGGSLVLCDRR
Sbjct: 1392 EANAGCCASVLKRKRGRPAKGSRVPKGMTPPSRQKKEEEDVCFICFDGGSLVLCDRR 1448



 Score = 87.4 bits (215), Expect = 2e-15
 Identities = 38/46 (82%), Positives = 42/46 (91%)
 Frame = +3

Query: 459 AVLKRKRGRPAKGTPKTTPPLRQKKEEEDVCFICFDGGSLVLCDRR 596
           AV KRKRGRPAKG PK  PP+RQ+++EEDVCFICFDGGSLVLCDRR
Sbjct: 50  AVFKRKRGRPAKGAPKVAPPVRQQQDEEDVCFICFDGGSLVLCDRR 95


>ref|XP_003538871.1| PREDICTED: zinc finger CCCH domain-containing protein 44-like
           [Glycine max]
          Length = 1365

 Score = 89.0 bits (219), Expect = 6e-16
 Identities = 39/46 (84%), Positives = 43/46 (93%)
 Frame = +3

Query: 459 AVLKRKRGRPAKGTPKTTPPLRQKKEEEDVCFICFDGGSLVLCDRR 596
           AVLKRKRGRPAKG PK  PP+RQ+++EEDVCFICFDGGSLVLCDRR
Sbjct: 58  AVLKRKRGRPAKGAPKVVPPVRQQQDEEDVCFICFDGGSLVLCDRR 103


>ref|XP_003612119.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
           gi|355513454|gb|AES95077.1| Zinc finger CCCH
           domain-containing protein [Medicago truncatula]
          Length = 1255

 Score = 88.6 bits (218), Expect = 7e-16
 Identities = 44/68 (64%), Positives = 49/68 (72%), Gaps = 14/68 (20%)
 Frame = +3

Query: 435 ERNDGCCVA-------------VLKRKRGRPAKGTPKTTPPLRQ-KKEEEDVCFICFDGG 572
           ER+ GCC A             V+K+KRGRPAKGTPK  PP +Q KKE+EDVCFICFDGG
Sbjct: 48  ERDGGCCTAPKVVLAVIAENSEVMKKKRGRPAKGTPKVAPPPKQIKKEDEDVCFICFDGG 107

Query: 573 SLVLCDRR 596
           SLVLCDRR
Sbjct: 108 SLVLCDRR 115


>ref|XP_003538870.1| PREDICTED: uncharacterized protein LOC100800608 [Glycine max]
          Length = 655

 Score = 87.4 bits (215), Expect = 2e-15
 Identities = 43/57 (75%), Positives = 46/57 (80%), Gaps = 3/57 (5%)
 Frame = +3

Query: 435 ERNDGCCVAVLKRKRGRPAKGT--PK-TTPPLRQKKEEEDVCFICFDGGSLVLCDRR 596
           + N  CC +VLKRKRGRPAKG   PK   PP RQK+EEEDVCFICFDGGSLVLCDRR
Sbjct: 41  QANGACCPSVLKRKRGRPAKGNRVPKGIIPPSRQKQEEEDVCFICFDGGSLVLCDRR 97


>ref|XP_002267100.2| PREDICTED: zinc finger CCCH domain-containing protein 44-like
           [Vitis vinifera]
          Length = 1643

 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 32/43 (74%), Positives = 36/43 (83%)
 Frame = +3

Query: 468 KRKRGRPAKGTPKTTPPLRQKKEEEDVCFICFDGGSLVLCDRR 596
           KRKRGRP +G  K  PP ++KK+EEDVCFICFDGG LVLCDRR
Sbjct: 92  KRKRGRPPRGQAKPPPP-KKKKDEEDVCFICFDGGDLVLCDRR 133


Top