BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00010447
         (3293 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago trunc...  1770   0.0  
ref|XP_003525493.1| PREDICTED: RNA-dependent RNA polymerase 2-li...  1699   0.0  
ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-li...  1679   0.0  
ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [V...  1428   0.0  
ref|XP_002321582.1| rna-dependent RNA polymerase [Populus tricho...  1421   0.0  

>ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
            gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase
            [Medicago truncatula]
          Length = 1308

 Score = 1770 bits (4584), Expect = 0.0
 Identities = 868/1070 (81%), Positives = 947/1070 (88%), Gaps = 1/1070 (0%)
 Frame = +1

Query: 1    RGTGRVQFETFEAKXXXXXXXXXXXXXXXXXXXXXXEACDDIVARPPLPHNRLDNGVLHA 180
            RG GRVQFET EAK                       + DDI+ RP LP NR++NG L+A
Sbjct: 53   RGVGRVQFETLEAKSKALTLAENKKLLLSSHFLCLDASSDDIIPRPALPRNRINNGALYA 112

Query: 181  GFVVGPDRVSVLETWEGVRGWVMPERNRLDFWVYHDGECFRLEIPFENILESNGYCSED- 357
            GF +GPD +SVL++WEGVRGWVMPER RLDFWV H  +CF+LEIPFENILE +GYCS++ 
Sbjct: 113  GFPIGPDCMSVLQSWEGVRGWVMPERQRLDFWVTHGDQCFKLEIPFENILECDGYCSDEG 172

Query: 358  FKLNALLLTLKYGPRIYQKKAGPNVAVKFKADRYRFCKEDFEFLWVRTTDFSPLKSIGHS 537
             K NALLL L+YGPRIYQK AGPNVA KFK DRYRFCKE+FEF+WVRTTDFS LKSIGHS
Sbjct: 173  SKPNALLLKLRYGPRIYQKMAGPNVAAKFKDDRYRFCKENFEFMWVRTTDFSTLKSIGHS 232

Query: 538  TSFCWEIEEELFASDIFRSFPLYRENLRDLSLEDGEEFCSPTETVPLVRCLSDTKVPYET 717
            TSF WEI EE F SD+FRSFPLYRENL+DLSLEDGE+FCSPTETVPLV+C  D+K+PYE+
Sbjct: 233  TSFFWEIVEESFDSDVFRSFPLYRENLKDLSLEDGEKFCSPTETVPLVKCRLDSKLPYES 292

Query: 718  LFQLNSLVHTQKISLASVDNELIDLLGSLSEETKAVIFQKLHKMNSTCYEPLKFVKTQLH 897
            LFQLNSLVHTQKISLASV++ELIDLL SL  ETKAVIFQKLHKMNSTCYEPLK+V+TQLH
Sbjct: 293  LFQLNSLVHTQKISLASVNDELIDLLASLDAETKAVIFQKLHKMNSTCYEPLKYVRTQLH 352

Query: 898  VXXXXXXXXXXXXXXXXMDNNIMSCHRALITPSKIYCLGPELETSNHVVKHFAPYASDFM 1077
            V                +DNNIMSCHRALITPSKIYCLGPELETSNHVVKHFA YASDFM
Sbjct: 353  VLSIKKKSVLPSQQKRLVDNNIMSCHRALITPSKIYCLGPELETSNHVVKHFAAYASDFM 412

Query: 1078 RITFVEEDWTKLPTNAISTSVQKGIFAKPFRTEIYKRILTILRDGIIIGFKRFEFLAFSA 1257
            RITFVEEDW+KLP NAIS +++KG+F++P RTEIYKR+L ILRDGI+IG KRFEFLAFSA
Sbjct: 413  RITFVEEDWSKLPNNAISITLKKGMFSRPLRTEIYKRVLNILRDGILIGSKRFEFLAFSA 472

Query: 1258 SQLRSNSVWLFASNDKVKAADIREWMGCFNNIRSVSKCAARMGQLFSSSRQTFEVAPQDV 1437
            SQLRSNSVWLFASNDKVKAADIREWMG FNNIRSVSKCAARMGQLFSSSRQTFE+APQDV
Sbjct: 473  SQLRSNSVWLFASNDKVKAADIREWMGSFNNIRSVSKCAARMGQLFSSSRQTFEMAPQDV 532

Query: 1438 EIIPDIEVASDGINYCFSDGIGKISQSFARQVAQKLKLDQSQIPSAFQIRYGGYKGVIAV 1617
            ++IPDIE+ SDGI+YCFSDGIGKISQSFARQ+A+KLKLD+++IPSAFQIRYGGYKGVIAV
Sbjct: 533  DLIPDIEITSDGIDYCFSDGIGKISQSFARQLAEKLKLDENRIPSAFQIRYGGYKGVIAV 592

Query: 1618 DXXXXXXXXXXXXXXXXESKNRMLCITKWSESMPCFLNREIISLLSTLGVKDEALLAMQE 1797
            D                ESKNRMLC+TKWSESMPCFLNREIISLLSTLG+KDEALLA+QE
Sbjct: 593  DRHSFKKLSLRKSMLKFESKNRMLCVTKWSESMPCFLNREIISLLSTLGIKDEALLALQE 652

Query: 1798 EQLNLLGRMLTDREAALDVLESLSGADSKSILVKMLHEFYEPDSEPYLSMMLKAHYMYQL 1977
            +QL LLG+MLTD+EAALDVLESL+GADS SILVKMLH FYEP+SEPYLSMMLKAHY YQL
Sbjct: 653  DQLQLLGKMLTDKEAALDVLESLNGADSNSILVKMLHRFYEPNSEPYLSMMLKAHYTYQL 712

Query: 1978 SDLKSRCRIFVPKGRVLIGCLDETGLLNYGQVFVRITVTKTKEKFGDESLRKVDGDDSTR 2157
            SDLKSRCRIFVPKGRVLIGCLDETGLLNYGQVFVRITV KTKEKFGDE+LR VDGDDSTR
Sbjct: 713  SDLKSRCRIFVPKGRVLIGCLDETGLLNYGQVFVRITVAKTKEKFGDENLRNVDGDDSTR 772

Query: 2158 IIVGKVVVTKNPCLHPGDIRILDAIYDEELEEKGLTDCIVFPQKGPRPHPNECSGGDLDG 2337
            IIVGKVVVTKNPCLHPGDIR+LDA+Y EELEEKGL DC+VFPQKG RPHPNECSGGDLDG
Sbjct: 773  IIVGKVVVTKNPCLHPGDIRVLDAVYSEELEEKGLRDCLVFPQKGHRPHPNECSGGDLDG 832

Query: 2338 DLFFISWDKDLIPCQTDNPMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHL 2517
            DLFFISWDKDLIP QT+NPMDYTGRRPRIMDHKVTLEEI QFFVDYMINDTLGAISTAHL
Sbjct: 833  DLFFISWDKDLIPAQTENPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHL 892

Query: 2518 VHADREPDKARSRKCLELAELHSMAVDFAKTGAPAEMPRSLKPREFPDFMERFDKPMYVS 2697
            VHADRE DKA+SRKCLELAELHSMAVDFAKTGAPAEMPRSLKPREFPDFMERF+KPMY+S
Sbjct: 893  VHADREHDKAKSRKCLELAELHSMAVDFAKTGAPAEMPRSLKPREFPDFMERFEKPMYIS 952

Query: 2698 KGVLGKLYRAIVESNLQVRCNPIWSEKLAEEAYDHQLEANGFEVFLETASSRKEMYAQKM 2877
            KGVLGKLYRA ++SNLQVR + + SEK A+EAYDHQLE +GFEVFLETA S ++MYAQKM
Sbjct: 953  KGVLGKLYRATIDSNLQVRFDMVMSEKFAKEAYDHQLEVDGFEVFLETALSHRDMYAQKM 1012

Query: 2878 STLMNFYGAETEDEMLTGNLHHRASYLQRDNRRYGDMKDRILVSVKDLQREAKEWFEADC 3057
             +LM+FYGA TEDEMLTGNL +RASYLQRDNRRYGDMKDRIL+SVKDLQ EAKEWFE+DC
Sbjct: 1013 ISLMSFYGATTEDEMLTGNLQNRASYLQRDNRRYGDMKDRILISVKDLQLEAKEWFESDC 1072

Query: 3058 QPHEYQPMASAWYHVTYHPKYYQENSNFLSFPWIVGDILLHIKSVNSKVH 3207
            QPHEYQ MASAWYHVTYHPKYY E+S FLSFPWIVGDILLHIKS N K+H
Sbjct: 1073 QPHEYQLMASAWYHVTYHPKYYIESSTFLSFPWIVGDILLHIKSAN-KIH 1121



 Score =  182 bits (463), Expect = 4e-43
 Identities = 115/262 (43%), Positives = 141/262 (53%), Gaps = 3/262 (1%)
 Frame = +1

Query: 2422 IMDHKVTLEEIQQFFVDYMINDTLGAISTAHLVHADREPDKARSRKCLELAELHSMAVDF 2601
            I+ H  +  +I +FFVDYMI DTLGAISTAHLVHAD E +KA+SRKCLELAELHSMAVDF
Sbjct: 1110 ILLHIKSANKIHKFFVDYMIKDTLGAISTAHLVHADCESNKAKSRKCLELAELHSMAVDF 1169

Query: 2602 AKTGAPAEMPRSLKPREFPDFMERFDKPMYVSKGVLGKLYRAIVESNLQVRCNPIWSEKL 2781
            AKT                              G L ++ R                   
Sbjct: 1170 AKT------------------------------GALAEMPRV------------------ 1181

Query: 2782 AEEAYDHQLEANGFEVFLETASSRKEMYAQKMSTLMNFYGAETEDEM-LTGNLHHRASYL 2958
                    L+   F  F+E     K MY  K   L   Y A  E  M LT N     ++L
Sbjct: 1182 --------LKPKEFPDFMERFE--KPMYVSK-GVLGKLYRALVESTMQLTSNFVSSGNFL 1230

Query: 2959 QRDNRRYGDMKDRILVSVK--DLQREAKEWFEADCQPHEYQPMASAWYHVTYHPKYYQEN 3132
                      K  +++++K  DLQ E KEWFE+DCQPHE+Q MASAWYHV +HPKYY ++
Sbjct: 1231 S---------KKHMIINLKLMDLQLEVKEWFESDCQPHEHQLMASAWYHVIHHPKYYHKS 1281

Query: 3133 SNFLSFPWIVGDILLHIKSVNS 3198
            SNF+SFPWIVGDILL++K  N+
Sbjct: 1282 SNFVSFPWIVGDILLYVKHANT 1303


>ref|XP_003525493.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
          Length = 1262

 Score = 1699 bits (4400), Expect = 0.0
 Identities = 843/1066 (79%), Positives = 923/1066 (86%), Gaps = 2/1066 (0%)
 Frame = +1

Query: 1    RGTGRVQFETFEAKXXXXXXXXXXXXXXXXXXXXXXEACDDIVARPPLPHNRLDNGVLHA 180
            RG GRVQFET +A+                      E   DI+ RP    +RL NGVL+A
Sbjct: 55   RGFGRVQFETLDARSRALSLSQLNHLLFHRHFLRLSETDADIIFRP---QHRLHNGVLYA 111

Query: 181  GFVVGPDRVSVLETWEGVRGWVMPERNRLDFWVYHDGECFRLEIPFENILESNGYC-SED 357
            GFV+   R+SVLE+WEGV GWV+P R RLDFWV+H+G+C+RLE  FE+ILES+GYC  ED
Sbjct: 112  GFVLSDHRMSVLESWEGVAGWVLPLRKRLDFWVWHNGDCYRLEFLFEDILESHGYCLGED 171

Query: 358  FKLNALLLTLKYGPRIYQKKAGPNVAVKFKADRYRFCKEDFEFLWVRTTDFSPLKSIGHS 537
             KLNALLL +K+GPRIY+KK G +VA KF+ DRYRFCKEDFEFLWVRTTDFSPLKSIGHS
Sbjct: 172  AKLNALLLKMKFGPRIYKKKTGADVAAKFRGDRYRFCKEDFEFLWVRTTDFSPLKSIGHS 231

Query: 538  TSFCWEIEEELFASDIFRSFPLYRENLRDLSLEDGEEFCSPTETVPLVRCLSDTKVPYET 717
            TSFCWEI EE  A D+F+SFPLY+ENLRDL+LEDGEEFCS TE VPLV+  S +K+PYE 
Sbjct: 232  TSFCWEIVEEHLALDVFKSFPLYKENLRDLALEDGEEFCSSTEAVPLVKRASQSKLPYEA 291

Query: 718  LFQLNSLVHTQKISLASVDNELIDLLGSLSEETKAVIFQKLHKMNSTCYEPLKFVKTQLH 897
            LFQLNSLVHTQKISLASVD+ELIDLL  L EET+AVIF KLHKM+ TCYEPLKFVKTQLH
Sbjct: 292  LFQLNSLVHTQKISLASVDDELIDLLAGLDEETRAVIFLKLHKMSFTCYEPLKFVKTQLH 351

Query: 898  VXXXXXXXXXXXXXXXXMDNNIMSCHRALITPSKIYCLGPELETSNHVVKHFAPYASDFM 1077
            V                 D+NIMSCHRALITP+KIYCLGPELETSNHVVKHFA +ASDFM
Sbjct: 352  VLSNKKKGLPQSSQKRLTDSNIMSCHRALITPTKIYCLGPELETSNHVVKHFASHASDFM 411

Query: 1078 RITFVEEDWTKLPTNAISTSVQKGIFAKPFRTEIYKRILTILRDGIIIGFKRFEFLAFSA 1257
            RITFVEE+W KLPTNA+ST VQKG+F+KP +TEIYKRILTILRDGI+IG KRFEFLAFSA
Sbjct: 412  RITFVEENWNKLPTNAVSTGVQKGLFSKPLKTEIYKRILTILRDGIVIGSKRFEFLAFSA 471

Query: 1258 SQLRSNSVWLFASNDKVKAADIREWMGCFNNIRSVSKCAARMGQLFSSSRQTFEVAPQDV 1437
            SQLRSNSVWLFASND +KAADIREWMGCFNNIRSVSKCAARMGQLFSSS QTFEV  QDV
Sbjct: 472  SQLRSNSVWLFASNDNLKAADIREWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVVSQDV 531

Query: 1438 EIIPDIEVASDGINYCFSDGIGKISQSFARQVAQKLKLDQSQIPSAFQIRYGGYKGVIAV 1617
            EIIPD+EV SDG++YCFSDGIGKISQSFARQVAQKLKLD +  PSAFQIRYGG+KGVIAV
Sbjct: 532  EIIPDVEVISDGVSYCFSDGIGKISQSFARQVAQKLKLDHT--PSAFQIRYGGFKGVIAV 589

Query: 1618 DXXXXXXXXXXXXXXXXESKNRMLCITKWSESMPCFLNREIISLLSTLGVKDEALLAMQE 1797
            D                ESKN MLC+TKWSESMPCFLNREIISLLSTLGVKDE LLAMQ 
Sbjct: 590  DRRSFRKLSLRSSMLKFESKNSMLCVTKWSESMPCFLNREIISLLSTLGVKDEVLLAMQH 649

Query: 1798 EQLNLLGRMLTDREAALDVLESLSGADSKSILVKMLHEFYEPDSEPYLSMMLKAHYMYQL 1977
            +QL+LLGRMLTD +AAL+VLESL+GADSKSILVKMLHEF EP+SEPYLSMMLKA+Y YQL
Sbjct: 650  DQLDLLGRMLTDSKAALEVLESLNGADSKSILVKMLHEFNEPNSEPYLSMMLKAYYAYQL 709

Query: 1978 SDLKSRCRIFVPKGRVLIGCLDETGLLNYGQVFVRITVTKTKEKFGDESLRKVDGDDSTR 2157
            SDLKSRCRIFVPKGRVL+GCLDETGLLNYGQVFVRITVTKT+EKFGDE+LRKVDGDD+T 
Sbjct: 710  SDLKSRCRIFVPKGRVLVGCLDETGLLNYGQVFVRITVTKTREKFGDENLRKVDGDDNTC 769

Query: 2158 IIVGKVVVTKNPCLHPGDIRILDAIYDEELEEKGLTDCIVFPQKGPRPHPNECSGGDLDG 2337
            IIVGKVVVTKNPCLHPGDIR+LDAIY EELEEKGL DC+VFPQKG RPHPNECSGGDLDG
Sbjct: 770  IIVGKVVVTKNPCLHPGDIRVLDAIYSEELEEKGLRDCLVFPQKGHRPHPNECSGGDLDG 829

Query: 2338 DLFFISWDKDLIPCQTDNPMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHL 2517
            DLFFISWDKDLIPCQT+ PMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHL
Sbjct: 830  DLFFISWDKDLIPCQTEAPMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHL 889

Query: 2518 VHADREPDKARSRKCLELAELHSMAVDFAKTGAPAEMPRSLKPREFPDFMERFDKPMYVS 2697
            VHADRE DKA+SRKCLELAELHSMAVDFAKTGAPA MPR LKPREFPDFMER DKPMY+S
Sbjct: 890  VHADREQDKAKSRKCLELAELHSMAVDFAKTGAPAAMPRVLKPREFPDFMERVDKPMYIS 949

Query: 2698 KGVLGKLYRAIVESNLQVRCNPIWSEKLAEEAYDHQLEANGFEVFLETASSRKEMYAQKM 2877
            KGVLGKLYRAI+ES +Q+R + +WSEK AEEAYD  LE NGFE FLETAS+ KEMYA+KM
Sbjct: 950  KGVLGKLYRAIIESQMQIRYSFVWSEKHAEEAYDRSLEVNGFEAFLETASTHKEMYAEKM 1009

Query: 2878 STLMNFYGAETEDEMLTGNLHHRASYLQRDNRRYGDMKDRILVSVKDLQREAKEWFEADC 3057
            S+LM+FYGAETEDEML GNL +RASYLQRDNRRYGDMKDRIL+SVK+LQREAKEWFE  C
Sbjct: 1010 SSLMDFYGAETEDEMLLGNLQNRASYLQRDNRRYGDMKDRILLSVKNLQREAKEWFETSC 1069

Query: 3058 QPHEYQPMASAWYHVTYHPKYY-QENSNFLSFPWIVGDILLHIKSV 3192
            +PHEY+PMASAWYHVTYHP YY +E+  FLSFPWIVG+ILL I+SV
Sbjct: 1070 EPHEYKPMASAWYHVTYHPSYYCRESPCFLSFPWIVGEILLQIRSV 1115


>ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
          Length = 1120

 Score = 1679 bits (4348), Expect = 0.0
 Identities = 831/1071 (77%), Positives = 919/1071 (85%), Gaps = 2/1071 (0%)
 Frame = +1

Query: 1    RGTGRVQFETFEAKXXXXXXXXXXXXXXXXXXXXXXEACDDIVARPPLPHNRLDNGVLHA 180
            RG GRVQFET +A+                      E   DI+ RP    +RL NGVL+A
Sbjct: 54   RGFGRVQFETLDARSRALSLSQLNQLLFNRHFLRLSETDSDIIFRP---QHRLQNGVLYA 110

Query: 181  GFVVGPDRVSVLETWEGVRGWVMPERNRLDFWVYHDGECFRLEIPFENILESNGYC-SED 357
            GF++   R+SVLE+WEG+ GWV+P+R RLDFWV+H+G+C+RLE  FE+ILES+GYC  ED
Sbjct: 111  GFMLSDHRMSVLESWEGIAGWVLPQRKRLDFWVWHNGDCYRLEFLFEDILESHGYCLGED 170

Query: 358  FKLNALLLTLKYGPRIYQKKAGPNVAVKFKADRYRFCKEDFEFLWVRTTDFSPLKSIGHS 537
             +LNALLL +K+GPRIY+KK G +VA  F+ DRYRF KEDFEFLWVRTTDFSPLKSIGHS
Sbjct: 171  ARLNALLLKMKFGPRIYKKKTGTDVAANFRGDRYRFLKEDFEFLWVRTTDFSPLKSIGHS 230

Query: 538  TSFCWEIEEELFASDIFRSFPLYRENLRDLSLEDGEEFCSPTETVPLVRCLSDTKVPYET 717
            TSFCWEI EE  ASD+F SFPLY+ENLRDL+LED EE CS TE VPLV+  + +K+PYE 
Sbjct: 231  TSFCWEIVEEHLASDVFTSFPLYKENLRDLALEDREELCSLTEAVPLVKHATQSKLPYEA 290

Query: 718  LFQLNSLVHTQKISLASVDNELIDLLGSLSEETKAVIFQKLHKMNSTCYEPLKFVKTQLH 897
            +FQLNSLVHTQKISLASVD+ELIDLL  L EET+AV+FQKLHKM+ TCYEPLKFVKTQLH
Sbjct: 291  VFQLNSLVHTQKISLASVDDELIDLLADLDEETRAVVFQKLHKMSFTCYEPLKFVKTQLH 350

Query: 898  VXXXXXXXXXXXXXXXXMDNNIMSCHRALITPSKIYCLGPELETSNHVVKHFAPYASDFM 1077
            V                 D+NIMSCHRALITP+KIYCLGPELETSNHVVKHFA  ASDFM
Sbjct: 351  VLSNKKKGLLQSPQNRLTDSNIMSCHRALITPTKIYCLGPELETSNHVVKHFASLASDFM 410

Query: 1078 RITFVEEDWTKLPTNAISTSVQKGIFAKPFRTEIYKRILTILRDGIIIGFKRFEFLAFSA 1257
            RITFVEE+W KLPTNA+ST VQKGIF+KP +TEIYKRILTILRDGI+IG KRFEFLAFSA
Sbjct: 411  RITFVEENWNKLPTNAVSTGVQKGIFSKPLKTEIYKRILTILRDGIVIGSKRFEFLAFSA 470

Query: 1258 SQLRSNSVWLFASNDKVKAADIREWMGCFNNIRSVSKCAARMGQLFSSSRQTFEVAPQDV 1437
            SQLRSNSVWLFASND +KAADIREWMGCFNNIRSVSKCAARMGQLFSSS QTFEVA +DV
Sbjct: 471  SQLRSNSVWLFASNDNLKAADIREWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVASEDV 530

Query: 1438 EIIPDIEVASDGINYCFSDGIGKISQSFARQVAQKLKLDQSQIPSAFQIRYGGYKGVIAV 1617
            E+IPDIEV SDG++YCFSDGIGKISQ FARQVAQKL LD +  PSAFQIRYGG+KGVIA+
Sbjct: 531  EMIPDIEVTSDGVSYCFSDGIGKISQCFARQVAQKLNLDHT--PSAFQIRYGGFKGVIAI 588

Query: 1618 DXXXXXXXXXXXXXXXXESKNRMLCITKWSESMPCFLNREIISLLSTLGVKDEALLAMQE 1797
            D                ES NRMLC+TKWSESMPCFLNREIISLL+TLGVKDE LLAMQ+
Sbjct: 589  DRHSFRKLSLRSSMLKFESNNRMLCVTKWSESMPCFLNREIISLLTTLGVKDEVLLAMQQ 648

Query: 1798 EQLNLLGRMLTDREAALDVLESLSGADSKSILVKMLHEFYEPDSEPYLSMMLKAHYMYQL 1977
            +QL+LLGRMLTD +AALDVLESL+GADSKSILVKMLHEF EP+SEPYLSMMLKA+Y YQL
Sbjct: 649  DQLDLLGRMLTDSKAALDVLESLNGADSKSILVKMLHEFNEPNSEPYLSMMLKAYYAYQL 708

Query: 1978 SDLKSRCRIFVPKGRVLIGCLDETGLLNYGQVFVRITVTKTKEKFGDESLRKVDGDDSTR 2157
            SDLKSRCRIFVPKGRVL+GCLDETGLLNYGQVFVRITV KT+E FGDE+LRKVDGDDSTR
Sbjct: 709  SDLKSRCRIFVPKGRVLVGCLDETGLLNYGQVFVRITVAKTRENFGDENLRKVDGDDSTR 768

Query: 2158 IIVGKVVVTKNPCLHPGDIRILDAIYDEELEEKGLTDCIVFPQKGPRPHPNECSGGDLDG 2337
            IIVGKVVVTKNPCLHPGDIR+LDAIY +ELEE GL DC+VFPQKG RPHPNECSGGDLDG
Sbjct: 769  IIVGKVVVTKNPCLHPGDIRVLDAIYSKELEENGLRDCLVFPQKGHRPHPNECSGGDLDG 828

Query: 2338 DLFFISWDKDLIPCQTDNPMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHL 2517
            DLFF+SWDKDLIPCQT+ PMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHL
Sbjct: 829  DLFFLSWDKDLIPCQTEAPMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHL 888

Query: 2518 VHADREPDKARSRKCLELAELHSMAVDFAKTGAPAEMPRSLKPREFPDFMERFDKPMYVS 2697
            VHADRE DKA+SRKCLELAELHSMAVDFAKTGAPA MPR LKPREFPDFMER DKPMY+S
Sbjct: 889  VHADREQDKAKSRKCLELAELHSMAVDFAKTGAPAAMPRVLKPREFPDFMERVDKPMYIS 948

Query: 2698 KGVLGKLYRAIVESNLQVRCNPIWSEKLAEEAYDHQLEANGFEVFLETASSRKEMYAQKM 2877
            KGVLGKLY AI+ES +Q+R + +WSEK AEEAYD  LE NGFE FLETAS+ KEMYA+KM
Sbjct: 949  KGVLGKLYHAIIESQMQIRYSFVWSEKHAEEAYDRSLEVNGFEAFLETASTHKEMYAEKM 1008

Query: 2878 STLMNFYGAETEDEMLTGNLHHRASYLQRDNRRYGDMKDRILVSVKDLQREAKEWFEADC 3057
            S+LM+FYGAETEDEML GN+ +RASYLQRDNRRYGDMKDRIL+SVK+LQREAKEWFE  C
Sbjct: 1009 SSLMDFYGAETEDEMLLGNVQNRASYLQRDNRRYGDMKDRILLSVKNLQREAKEWFETSC 1068

Query: 3058 QPHEYQPMASAWYHVTYHPKYY-QENSNFLSFPWIVGDILLHIKSVNSKVH 3207
            QP EY+PMASAWYHVTYH  +Y QE+  FLSFPWIVGDILL I+SVNS V+
Sbjct: 1069 QPREYKPMASAWYHVTYHRSHYCQESPCFLSFPWIVGDILLQIRSVNSFVN 1119


>ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
            gi|297733815|emb|CBI15062.3| unnamed protein product
            [Vitis vinifera]
          Length = 1127

 Score = 1428 bits (3696), Expect = 0.0
 Identities = 703/1068 (65%), Positives = 839/1068 (78%), Gaps = 1/1068 (0%)
 Frame = +1

Query: 1    RGTGRVQFETFEAKXXXXXXXXXXXXXXXXXXXXXXEACDDIVARPPLPHNRLDNGVLHA 180
            RG GRVQFET +AK                         DDI+ RP  P N++D+GVLH 
Sbjct: 51   RGFGRVQFETLQAKRAADLLSLQGDLVFRGSSLSISATFDDIIVRPVEPRNQVDSGVLHV 110

Query: 181  GFVVGPDRVSVLETWEGVRGWVMPERNRLDFWVYHDGECFRLEIPFENILESNGYCSEDF 360
            GF+V  D + VLE+WEGV+  VMPERNR++FWV  DGE ++LE+PF+++LES+  C    
Sbjct: 111  GFLVEDDCMLVLESWEGVKTLVMPERNRVEFWVDKDGERYKLEVPFDDVLESSACCLGGG 170

Query: 361  KLNALLLTLKYGPRIYQKKAGPNVAVKFKADRYRFCKEDFEFLWVRTTDFSPLKSIGHST 540
            K+NALLL LKY P+I+QK AGPN+A KF ADRY   KED EFLW+RTTDFS +KS+G ST
Sbjct: 171  KVNALLLKLKYAPKIFQKFAGPNIASKFSADRYHISKEDAEFLWLRTTDFSSIKSLGQST 230

Query: 541  SFCWEIEEELFASDIFRSFPLYRENLRDLSLEDGEEFCSPTETVPLVRCLSDTKVPYETL 720
            SFCWEI+E   A DIF SFP Y++ L +L+LE GE FCS +  VPLV+C S  K+ YE L
Sbjct: 231  SFCWEIKEGFPALDIFASFPYYKD-LTELTLEQGEGFCSDSGLVPLVKCESGPKLAYEIL 289

Query: 721  FQLNSLVHTQKISLASVDNELIDLLGSLSEETKAVIFQKLHKMNSTCYEPLKFVKTQLHV 900
            FQLNSLVH QKISLA+VD +LI++L +L  +T  +I QKLHK  ST Y+P+ F+K Q H+
Sbjct: 290  FQLNSLVHAQKISLAAVDTDLIEILSNLPVDTAIMILQKLHKRKSTRYDPISFIKAQAHI 349

Query: 901  XXXXXXXXXXXXXXXXMDNNIMSCHRALITPSKIYCLGPELETSNHVVKHFAPYASDFMR 1080
                             +NN+MSCHR L+TPSKIYCLGPELE+SN+VVKH+A YASDF+R
Sbjct: 350  INMNIKNLPPSSHSRLTNNNVMSCHRVLVTPSKIYCLGPELESSNYVVKHYAAYASDFVR 409

Query: 1081 ITFVEEDWTKLPTNAISTSVQKGIFAKPFRTEIYKRILTILRDGIIIGFKRFEFLAFSAS 1260
            ++FVEEDW+KLP+NA+S S++K  FA PFRTEIY RIL+ILR+GI+IG KRF+FLAFSAS
Sbjct: 410  VSFVEEDWSKLPSNALSMSIRKAFFADPFRTEIYHRILSILREGIVIGAKRFQFLAFSAS 469

Query: 1261 QLRSNSVWLFASNDKVKAADIREWMGCFNNIRSVSKCAARMGQLFSSSRQTFEVAPQDVE 1440
            QLRSNSVW+FASNDKV+  DIREWMGCF  IRSVSKCAARMGQLFSSS QT  V  QDVE
Sbjct: 470  QLRSNSVWMFASNDKVRVDDIREWMGCFKKIRSVSKCAARMGQLFSSSVQTLPVPVQDVE 529

Query: 1441 IIPDIEVASDGINYCFSDGIGKISQSFARQVAQKLKLDQSQIPSAFQIRYGGYKGVIAVD 1620
            +IPDIEV SDG  YCFSDGIGKIS SFA+QVAQK  L Q+  PSAFQIRYGGYKGVIAVD
Sbjct: 530  VIPDIEVTSDGFGYCFSDGIGKISLSFAKQVAQKCGLHQT--PSAFQIRYGGYKGVIAVD 587

Query: 1621 XXXXXXXXXXXXXXXXESKNRMLCITKWSESMPCFLNREIISLLSTLGVKDEALLAMQEE 1800
                            ES+NRML +TKWSES PC+LNREI+SLLSTLGV+DE   A+  E
Sbjct: 588  RNSFRKLSLRSSMLKFESQNRMLNVTKWSESTPCYLNREIVSLLSTLGVEDENFEALLNE 647

Query: 1801 QLNLLGRMLTDREAALDVLESLSGADSKSILVKMLHEFYEPDSEPYLSMMLKAHYMYQLS 1980
            Q++LL +MLT+R+AALDVLES+ G D+K+IL KML + YEP+ EPYLSMML+A+   QLS
Sbjct: 648  QMHLLDKMLTNRQAALDVLESMGGIDNKNILAKMLLQGYEPNVEPYLSMMLQAYRESQLS 707

Query: 1981 DLKSRCRIFVPKGRVLIGCLDETGLLNYGQVFVRITVTKTKEKFGDESL-RKVDGDDSTR 2157
            D+++RCRIFVPK RVLIGCLDETG+LNYGQV+VR+T+TK + K  ++S  +KVD  D+T 
Sbjct: 708  DIRTRCRIFVPKARVLIGCLDETGILNYGQVYVRVTMTKAEHKCRNQSFFQKVD--DTTS 765

Query: 2158 IIVGKVVVTKNPCLHPGDIRILDAIYDEELEEKGLTDCIVFPQKGPRPHPNECSGGDLDG 2337
            +++GKV+VTKNPCLHPGDIR+LDA+Y+ ELEEKGL DCI+FPQKG RPHPNECSGGDLDG
Sbjct: 766  VVIGKVIVTKNPCLHPGDIRVLDAVYEVELEEKGLVDCILFPQKGERPHPNECSGGDLDG 825

Query: 2338 DLFFISWDKDLIPCQTDNPMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHL 2517
            D FFI WD+ LIP QT+ PMDYT RRPRIMDH VTLEEIQ+FFVDYMINDTLG ISTAHL
Sbjct: 826  DQFFICWDEGLIPSQTEAPMDYTSRRPRIMDHDVTLEEIQKFFVDYMINDTLGVISTAHL 885

Query: 2518 VHADREPDKARSRKCLELAELHSMAVDFAKTGAPAEMPRSLKPREFPDFMERFDKPMYVS 2697
            VHADREP+KARS+KCLELA LHSMAVDFAKTGAPAEMPR LKP+EFPDFMER DKPMY+S
Sbjct: 886  VHADREPEKARSKKCLELATLHSMAVDFAKTGAPAEMPRVLKPKEFPDFMERVDKPMYIS 945

Query: 2698 KGVLGKLYRAIVESNLQVRCNPIWSEKLAEEAYDHQLEANGFEVFLETASSRKEMYAQKM 2877
             G LGKLYRA + S +  + + +WS  +   AYDH LE +GFE FLE A   KEMYA+KM
Sbjct: 946  NGALGKLYRATIASRVNEKSSFVWSGTIPGAAYDHDLEVDGFETFLEIAKLHKEMYAEKM 1005

Query: 2878 STLMNFYGAETEDEMLTGNLHHRASYLQRDNRRYGDMKDRILVSVKDLQREAKEWFEADC 3057
            +TLMNFYGAE+EDEMLTGNL ++  YLQRDNRR+ +MKDRIL+SVK LQ+EAKEW    C
Sbjct: 1006 ATLMNFYGAESEDEMLTGNLRNKLMYLQRDNRRFTEMKDRILISVKSLQKEAKEWLYGSC 1065

Query: 3058 QPHEYQPMASAWYHVTYHPKYYQENSNFLSFPWIVGDILLHIKSVNSK 3201
            +PH++Q MASAWYHVTYH  +  +  NFLSFPWIVG++LL IKS NS+
Sbjct: 1066 KPHQHQKMASAWYHVTYHSTFSSQTPNFLSFPWIVGEVLLVIKSANSR 1113


>ref|XP_002321582.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222868578|gb|EEF05709.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1110

 Score = 1421 bits (3678), Expect = 0.0
 Identities = 715/1069 (66%), Positives = 842/1069 (78%), Gaps = 2/1069 (0%)
 Frame = +1

Query: 1    RGTGRVQFETFEAKXXXXXXXXXXXXXXXXXXXXXXEACDDIVARPPLPHNRLDNGVLHA 180
            RG GRVQF + E K                      E  DDI+ RP    NR++NGVL+ 
Sbjct: 52   RGFGRVQFSSLEVKHEALSLSLKNKLVLKSQNLKLSETYDDIIPRPVKDQNRMENGVLYV 111

Query: 181  GFVVGPDRVSVLETWEGVRGWVMPERNRLDFWVYHDGEC-FRLEIPFENILESNGYCSED 357
            GF+     + VLE WEGVRGW MPER R++FW+    E  ++L + FE+ILE+ GY  + 
Sbjct: 112  GFMKKETTLCVLEYWEGVRGWFMPERRRIEFWIRVGQEFRYKLVVEFEDILEAVGYPLDG 171

Query: 358  FKLNALLLTLKYGPRIYQKKAGPNVAVKFKADRYRFCKEDFEFLWVRTTDFSPLKSIGHS 537
             K+NA++L L+YGPRIYQK +GP +A KF  +RY +CKEDF+FLWVRTTD S +KSIG S
Sbjct: 172  DKVNAVVLKLRYGPRIYQKISGPGIASKFSTNRYFYCKEDFDFLWVRTTDISAIKSIGQS 231

Query: 538  TSFCWEIEEELFASDIFRSFPLYRENLRDLSLEDGEEFCSPTETVPLVRCLSDTKVPYET 717
            TSFCWEI E L ASD FR+FP Y+E++  L LEDGEEFCS +ETVPL+RC SD K+ YE 
Sbjct: 232  TSFCWEIGEGLEASDTFRNFPYYQEDMNRLDLEDGEEFCSASETVPLIRCGSD-KLAYEV 290

Query: 718  LFQLNSLVHTQKISLASVDNELIDLLGSLSEETKAVIFQKLHKMNSTCYEPLKFVKTQLH 897
            LFQLNSLVHTQKISLA+VD++LI +L +L+  T  +I QKLHK+  TCY+PL FVK  L 
Sbjct: 291  LFQLNSLVHTQKISLAAVDSDLIKILRNLTVNTAIIILQKLHKLKMTCYDPLSFVKQSLR 350

Query: 898  VXXXXXXXXXXXXXXXXMDNNIMSCHRALITPSKIYCLGPELETSNHVVKHFAPYASDFM 1077
                              +NNIMSCHRALITPSKI+CLGPE ETSN+VVKHFA YASDF+
Sbjct: 351  -------ESLSSPPKSLTENNIMSCHRALITPSKIFCLGPEYETSNYVVKHFAQYASDFI 403

Query: 1078 RITFVEEDWTKLPTNAISTSVQKGIFAKPFRTEIYKRILTILRDGIIIGFKRFEFLAFSA 1257
            R+TFVEEDW+KLP NAISTS+Q+GIFAKPFRT IY RIL+ILRDG +IG KRFEFLAFSA
Sbjct: 404  RVTFVEEDWSKLPANAISTSIQRGIFAKPFRTGIYHRILSILRDGFVIGAKRFEFLAFSA 463

Query: 1258 SQLRSNSVWLFASNDKVKAADIREWMGCFNNIRSVSKCAARMGQLFSSSRQTFEVAPQDV 1437
            SQLRSNSVW+FASN+ VKA DIR+WMGCF+ IRSVSKCAARMGQLFSSS QTF V  QDV
Sbjct: 464  SQLRSNSVWMFASNNGVKAEDIRKWMGCFDKIRSVSKCAARMGQLFSSSLQTFVVPVQDV 523

Query: 1438 EIIPDIEVASDGINYCFSDGIGKISQSFARQVAQKLKLDQSQIPSAFQIRYGGYKGVIAV 1617
            EIIPDIEV +DGI+YCFSDGIGKIS SFA+QVA K  L  S  PSAFQIRYGGYKGV+AV
Sbjct: 524  EIIPDIEVTTDGIDYCFSDGIGKISLSFAKQVAHKCGL--SHTPSAFQIRYGGYKGVVAV 581

Query: 1618 DXXXXXXXXXXXXXXXXESKNRMLCITKWSESMPCFLNREIISLLSTLGVKDEALLAMQE 1797
            D                +S+NRML +TKWSESMPC+LNREIISLLSTLGV DE   A+Q+
Sbjct: 582  DRNSFRKLSLRSSMLKFDSENRMLNVTKWSESMPCYLNREIISLLSTLGVADEIFQALQQ 641

Query: 1798 EQLNLLGRMLTDREAALDVLESLSGADSKSILVKMLHEFYEPDSEPYLSMMLKAHYMYQL 1977
            +QL  L +MLT++E+ALDVLE+L+ ADSK+ILV+ML + YEP+ EPYLSMML+A++   L
Sbjct: 642  KQLYRLRKMLTNKESALDVLENLAWADSKNILVQMLLQGYEPNVEPYLSMMLQAYHENSL 701

Query: 1978 SDLKSRCRIFVPKGRVLIGCLDETGLLNYGQVFVRITVTKTKEKFGDESL-RKVDGDDST 2154
             +L+SRCRIFVPKGR+LIGCLDE+G+L+YGQV+VRIT+TK + +  D+S  RKVD  +ST
Sbjct: 702  MELRSRCRIFVPKGRILIGCLDESGILDYGQVYVRITMTKAELQCCDQSFFRKVD--EST 759

Query: 2155 RIIVGKVVVTKNPCLHPGDIRILDAIYDEELEEKGLTDCIVFPQKGPRPHPNECSGGDLD 2334
              I+G+V VTKNPCLHPGDIR+L+A+YD ELEEKGL DCI+FPQ G RPHPNECSGGDLD
Sbjct: 760  STIIGEVAVTKNPCLHPGDIRVLEAVYDVELEEKGLVDCIIFPQNGGRPHPNECSGGDLD 819

Query: 2335 GDLFFISWDKDLIPCQTDNPMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAH 2514
            GD FFISWD+ L+PC T+ PMDY G R RIMDH VTLEEIQ+FFVDYMINDTLGAISTAH
Sbjct: 820  GDQFFISWDEGLLPCHTEAPMDYVGGRQRIMDHNVTLEEIQRFFVDYMINDTLGAISTAH 879

Query: 2515 LVHADREPDKARSRKCLELAELHSMAVDFAKTGAPAEMPRSLKPREFPDFMERFDKPMYV 2694
            LVHAD EPDKARS KCL+LA LHSMAVDFAKTGAPAEMP  LKPREFPDFMER +K MY+
Sbjct: 880  LVHADCEPDKARSEKCLQLATLHSMAVDFAKTGAPAEMPLYLKPREFPDFMERAEKQMYI 939

Query: 2695 SKGVLGKLYRAIVESNLQVRCNPIWSEKLAEEAYDHQLEANGFEVFLETASSRKEMYAQK 2874
            S GVLGKLYR I +S  Q R N +WS+K+AE  YD  LE  GFE FL  AS  KE Y +K
Sbjct: 940  SDGVLGKLYRDIHDSTRQERSNFMWSKKIAEATYDQDLEVKGFEDFLGIASIYKEKYMEK 999

Query: 2875 MSTLMNFYGAETEDEMLTGNLHHRASYLQRDNRRYGDMKDRILVSVKDLQREAKEWFEAD 3054
            MSTLM++YGA+TEDE+LTGNL HR +YLQRDNR+YGD+KDRILVS+K+L++EAKEWFE+ 
Sbjct: 1000 MSTLMDYYGAKTEDEILTGNLRHRPTYLQRDNRKYGDVKDRILVSLKNLKKEAKEWFESS 1059

Query: 3055 CQPHEYQPMASAWYHVTYHPKYYQENSNFLSFPWIVGDILLHIKSVNSK 3201
            C P E+Q MASAWYHVTYHP Y+ E  N LSFPWIVGDILL+IKS+NS+
Sbjct: 1060 CNPTEHQCMASAWYHVTYHPTYFHERMNCLSFPWIVGDILLNIKSLNSR 1108