BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00010310
         (1575 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003625673.1| RNA polymerase sigma factor rpoD [Medicago t...   617   e-174
ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor rpoD ...   563   e-158
ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-...   557   e-156
gb|AFK38759.1| unknown [Lotus japonicus]                              503   e-140
ref|XP_003590454.1| RNA polymerase sigma factor [Medicago trunca...   498   e-138

>ref|XP_003625673.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
            gi|355500688|gb|AES81891.1| RNA polymerase sigma factor
            rpoD [Medicago truncatula]
          Length = 557

 Score =  617 bits (1591), Expect = e-174
 Identities = 324/497 (65%), Positives = 378/497 (76%), Gaps = 10/497 (2%)
 Frame = +3

Query: 3    TLNTRPMDVASVHDK------NNASNVDELVHCFMQQLHLPCHLRNLLASSPTGETAASS 164
            TLNTR  D+ S+ +K      +   +VD  VH  M QLHL CHL+NLLASSP  E   SS
Sbjct: 67   TLNTRVTDMTSICEKIITGDGDGDGHVDVSVHNCMHQLHLRCHLQNLLASSPE-EDFVSS 125

Query: 165  TMQPIAVDSEMPADGLQWNXXXXXXXXXXXXXXXXXXXEELKLIKAXXXXXXXXGLASTS 344
            +    +  + +PADG QW+                   +ELKL+K         GLA   
Sbjct: 126  SSSSSSSSTMLPADGFQWDALTLAKQALSASKQAAAVAQELKLVKIDDDDSLPLGLA--- 182

Query: 345  LADSSLGKNKIXXXXXXXXXXXXXXXXXX----DEDSYLTRKSNVQGRLRVEKKLKEGFD 512
              DSSLGKNKI                      D++ YLT+KSNVQ RLR+EKKLKEG D
Sbjct: 183  --DSSLGKNKIVRSIRLKERRSKQRKVSNSKVLDDEMYLTKKSNVQRRLRLEKKLKEGLD 240

Query: 513  ENDPLRLFLRGPESKQLLTLVEETQLIAQLQDLFRLEEVKNKLQSQFGRDPTLAEWADGV 692
             N  LRLFL  PE+KQLL++ EE+QLIAQ+QDLF+L+E K KLQS FGR+PTLAEWADGV
Sbjct: 241  GNHALRLFLWSPETKQLLSIEEESQLIAQIQDLFKLKETKIKLQSHFGREPTLAEWADGV 300

Query: 693  GLSCHALQTQLHCGNRSKEKLIHANLRLVVHIAKHYQGRGVSFQDLLQEGSMGLMKSVEK 872
            GLSC  LQ +LHCGNRSK+KLIHANLRLVVHIAK+YQGRG+S QDLLQEGSMGLM+SVEK
Sbjct: 301  GLSCRDLQKRLHCGNRSKDKLIHANLRLVVHIAKYYQGRGLSLQDLLQEGSMGLMRSVEK 360

Query: 873  FKPQAGCRFATYAYWWIRQSIRRAIFLHSRTIRLPENLYTLLGKVMEAKKFYIKEGNLHP 1052
            FKPQAGCRF+TYAYWWIRQ+IRRA+FLHS+TIRLPEN Y LLGK+ EAKK YIKEGNLHP
Sbjct: 361  FKPQAGCRFSTYAYWWIRQTIRRALFLHSKTIRLPENFYALLGKIAEAKKSYIKEGNLHP 420

Query: 1053 TKEELARRVEITVDKLELLLSAVRVPLSMQKAVWADQDTTFQEITADSAIEAPDLCVAKQ 1232
            TKEE+A+RV ITVD+LE+LL + R PLSM++AVWAD DTTFQEITADS+IE P++CVAKQ
Sbjct: 421  TKEEIAKRVGITVDRLEMLLFSTRTPLSMERAVWADSDTTFQEITADSSIEIPNVCVAKQ 480

Query: 1233 QMRSHVRNLLSILSPKERRIIRLRFGIEDGYEKSLSEIGNRMGLCKERVRQLESRGLNKL 1412
             MRSHVRNLL IL PKER+++RLRFGIEDGYEKSL+EIG  +G+CKERVRQLES+ LNKL
Sbjct: 481  LMRSHVRNLLGILPPKERKVLRLRFGIEDGYEKSLTEIGKVLGVCKERVRQLESQALNKL 540

Query: 1413 KQCLVSQQLDAYVNLLV 1463
            KQCLVSQQLDAYV+L+V
Sbjct: 541  KQCLVSQQLDAYVDLIV 557


>ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor rpoD [Glycine max]
          Length = 574

 Score =  563 bits (1450), Expect = e-158
 Identities = 295/490 (60%), Positives = 357/490 (72%), Gaps = 4/490 (0%)
 Frame = +3

Query: 6    LNTRPMDVASVHDKNNASNVDELVHCFMQQLHLPCHLRNLLASSPTGETAASSTMQPIAV 185
            L+TR MD   VH++NN  N D++V  F + LH   HL+NLLASS TGE +ASST+Q ++ 
Sbjct: 86   LSTRQMDTVMVHEENNTENADQVVLDFRKHLHYWPHLQNLLASSQTGEISASSTLQQVSS 145

Query: 186  DSEMPADGLQWNXXXXXXXXXXXXXXXXXXXEELKLIKAXXXXXXXXGLASTSLADSSLG 365
            D +   +G+Q N                   E+LK IKA        GLAST LAD S+G
Sbjct: 146  DLDRHTNGVQCNRVSLAKKALSTSKQGSSVVEDLKSIKADDDSIPF-GLASTGLADPSIG 204

Query: 366  KNKIXXXXXXXXXXXXXXXXXX----DEDSYLTRKSNVQGRLRVEKKLKEGFDENDPLRL 533
            +NK                       D+++YL RK +   +LRVEKK  E  D+NDPL  
Sbjct: 205  RNKTVRSTRLLERRSKQRKVPKSKVIDDETYLARKDDAHEKLRVEKKKNEELDQNDPLCF 264

Query: 534  FLRGPESKQLLTLVEETQLIAQLQDLFRLEEVKNKLQSQFGRDPTLAEWADGVGLSCHAL 713
            FLRGPE+KQLLTL +E+QLI+Q+QDL RLEEVK KLQSQFGR+PT+AEWA+GVGL+C  L
Sbjct: 265  FLRGPETKQLLTLEQESQLISQIQDLLRLEEVKTKLQSQFGREPTMAEWAEGVGLNCRML 324

Query: 714  QTQLHCGNRSKEKLIHANLRLVVHIAKHYQGRGVSFQDLLQEGSMGLMKSVEKFKPQAGC 893
              QL  G+RS+EKLI ANLR+VVH+AK YQGRG+S QDLLQEGSMGLMKSVEKF P  G 
Sbjct: 325  HAQLRSGSRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLVGS 384

Query: 894  RFATYAYWWIRQSIRRAIFLHSRTIRLPENLYTLLGKVMEAKKFYIKEGNLHPTKEELAR 1073
            RF  YA+WWIRQ+IR+A+F HSRTIRLPE ++ LLGKVMEAKK YI+EGNLHPTKEELAR
Sbjct: 385  RFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVFILLGKVMEAKKLYIQEGNLHPTKEELAR 444

Query: 1074 RVEITVDKLELLLSAVRVPLSMQKAVWADQDTTFQEITADSAIEAPDLCVAKQQMRSHVR 1253
            RV +TV+K++ LL + R+P+SMQ+ VWADQ+TTFQEITAD  +EA D+ V KQ MR HV 
Sbjct: 445  RVGVTVEKIDKLLFSARIPISMQQTVWADQNTTFQEITADPTVEATDVSVEKQLMRQHVL 504

Query: 1254 NLLSILSPKERRIIRLRFGIEDGYEKSLSEIGNRMGLCKERVRQLESRGLNKLKQCLVSQ 1433
            N+LSIL PKERRIIRLR+G EDG +KSLSEIG+  GL KERVRQLE R L KLK+CLV Q
Sbjct: 505  NVLSILHPKERRIIRLRYGFEDGEQKSLSEIGDIFGLSKERVRQLEIRALYKLKKCLVKQ 564

Query: 1434 QLDAYVNLLV 1463
             LDAYV+LL+
Sbjct: 565  GLDAYVDLLL 574


>ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
          Length = 571

 Score =  557 bits (1436), Expect = e-156
 Identities = 295/491 (60%), Positives = 359/491 (73%), Gaps = 5/491 (1%)
 Frame = +3

Query: 6    LNTRPMDVASVHDKNNASNVDELVHCFMQQLHLPCHLRNL-LASSPTGETAASSTMQPIA 182
            L+TR MD  +VH++NN  N D++V  F + LH   H  NL L SS  GE AASST++ ++
Sbjct: 87   LSTRQMDTVTVHEENNTENADQVVLDFRKHLH---HWPNLQLTSSQIGEVAASSTLEHVS 143

Query: 183  VDSEMPADGLQWNXXXXXXXXXXXXXXXXXXXEELKLIKAXXXXXXXXGLASTSLADSSL 362
            VD E   +G+Q+N                   E+LK IKA         LASTSLAD S+
Sbjct: 144  VDLERRPNGVQFNGVSLAKKALSTSKQESSVVEDLKSIKADDVPF---SLASTSLADPSI 200

Query: 363  GKNKIXXXXXXXXXXXXXXXXXX----DEDSYLTRKSNVQGRLRVEKKLKEGFDENDPLR 530
            G+NK                       D+++YL RK + Q +LR EKK  E  D++DPLR
Sbjct: 201  GRNKTVRSTRLLERRSKQRKVPKSKVIDDETYLARKDDAQEKLRAEKKKNEELDQDDPLR 260

Query: 531  LFLRGPESKQLLTLVEETQLIAQLQDLFRLEEVKNKLQSQFGRDPTLAEWADGVGLSCHA 710
            LFL GPE+KQLLTL +E+QLI+Q+QDL RLEEVK  LQSQFGR+PT+AEWA+G GL+C  
Sbjct: 261  LFLWGPETKQLLTLEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLNCRL 320

Query: 711  LQTQLHCGNRSKEKLIHANLRLVVHIAKHYQGRGVSFQDLLQEGSMGLMKSVEKFKPQAG 890
            LQ+QLH GNRS+EKLI ANLR+VVH+AK YQGRG+S QDLLQEGSMGLMKSVEKF P AG
Sbjct: 321  LQSQLHSGNRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAG 380

Query: 891  CRFATYAYWWIRQSIRRAIFLHSRTIRLPENLYTLLGKVMEAKKFYIKEGNLHPTKEELA 1070
             RF  YA+WWIRQ+IR+A+F HSRTIRLPE ++ LLGKVMEAKK YI+EGNLHPTKEELA
Sbjct: 381  SRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVFILLGKVMEAKKLYIQEGNLHPTKEELA 440

Query: 1071 RRVEITVDKLELLLSAVRVPLSMQKAVWADQDTTFQEITADSAIEAPDLCVAKQQMRSHV 1250
            RRV +TV+K++ LL + R+P+SMQ+ VWADQ+TTFQEITAD  +EA D+ V KQ MR HV
Sbjct: 441  RRVGVTVEKIDKLLFSARIPISMQQTVWADQNTTFQEITADPTVEATDVTVEKQLMRRHV 500

Query: 1251 RNLLSILSPKERRIIRLRFGIEDGYEKSLSEIGNRMGLCKERVRQLESRGLNKLKQCLVS 1430
             N+LS+L PKERRIIRLR+G EDG +KSLSEIG+  GL KERVRQLE R L KLK+CLV 
Sbjct: 501  LNVLSVLHPKERRIIRLRYGFEDGEQKSLSEIGDIFGLSKERVRQLEIRALYKLKKCLVK 560

Query: 1431 QQLDAYVNLLV 1463
            Q LDAYV+LL+
Sbjct: 561  QGLDAYVDLLL 571


>gb|AFK38759.1| unknown [Lotus japonicus]
          Length = 311

 Score =  503 bits (1296), Expect = e-140
 Identities = 247/311 (79%), Positives = 282/311 (90%)
 Frame = +3

Query: 531  LFLRGPESKQLLTLVEETQLIAQLQDLFRLEEVKNKLQSQFGRDPTLAEWADGVGLSCHA 710
            +FL GPE+K+LLT  EE+QLI+Q+Q+LFRLEEVK +LQSQFGR+PT+AEWADGVGLSC+A
Sbjct: 1    MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60

Query: 711  LQTQLHCGNRSKEKLIHANLRLVVHIAKHYQGRGVSFQDLLQEGSMGLMKSVEKFKPQAG 890
            LQTQL  G RSKEKLIHANLR+VVH+AK+Y GRG+SFQDLLQEGSMGLMKSVEKFKPQAG
Sbjct: 61   LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120

Query: 891  CRFATYAYWWIRQSIRRAIFLHSRTIRLPENLYTLLGKVMEAKKFYIKEGNLHPTKEELA 1070
            CRFA+YAYWWIRQ+IRRA+FLHSRTIRLPEN+YTLLGK++EAKKFY +EGN+HPTKEELA
Sbjct: 121  CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180

Query: 1071 RRVEITVDKLELLLSAVRVPLSMQKAVWADQDTTFQEITADSAIEAPDLCVAKQQMRSHV 1250
            R++ +TVDKLE+LLSA R+PLSMQ+ VW DQDTT+QEITAD+AIE PD+ VAKQ MR H 
Sbjct: 181  RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240

Query: 1251 RNLLSILSPKERRIIRLRFGIEDGYEKSLSEIGNRMGLCKERVRQLESRGLNKLKQCLVS 1430
            RNLL  L+P+ERRIIRLRFGIEDGYEKSLSEIG   GL KERVRQLESR L+KLKQCL S
Sbjct: 241  RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300

Query: 1431 QQLDAYVNLLV 1463
              LDAY NLLV
Sbjct: 301  HGLDAYANLLV 311


>ref|XP_003590454.1| RNA polymerase sigma factor [Medicago truncatula]
            gi|355479502|gb|AES60705.1| RNA polymerase sigma factor
            [Medicago truncatula]
          Length = 567

 Score =  498 bits (1282), Expect = e-138
 Identities = 274/499 (54%), Positives = 341/499 (68%), Gaps = 12/499 (2%)
 Frame = +3

Query: 3    TLNTRPMDVASVHDKNNASNVDELVHCFMQQLHLPCHLRNLLASSPTGETAASSTMQPIA 182
            TLNTR MD+ SV +KN+ SN D++   F Q LHL   L NLL SS TGE   SST+Q   
Sbjct: 84   TLNTRQMDMVSVQEKNDTSNTDQVARDFRQHLHLLPRLENLLTSSQTGEMDGSSTLQH-- 141

Query: 183  VDSEMPADGLQWNXXXXXXXXXXXXXXXXXXXEELKLIKAXXXXXXXXG--------LAS 338
                  AD LQ N                   E+L  IKA                 LAS
Sbjct: 142  ------ADSLQCNAVSLSKQAASVA-------EDLISIKADEDADNSIPFGLVPPSCLAS 188

Query: 339  TSLADSSLGKNKIXXXXXXXXXXXXXXXXXX----DEDSYLTRKSNVQGRLRVEKKLKEG 506
            +S A+  LG NK                       D+++YL  K   + +L+V+KK+ +G
Sbjct: 189  SSSAEPLLGGNKTVRSTRLRERRAKERKVPKLKVKDKETYLDGKDAAEEKLQVQKKISKG 248

Query: 507  FDENDPLRLFLRGPESKQLLTLVEETQLIAQLQDLFRLEEVKNKLQSQFGRDPTLAEWAD 686
             +++DPL  FL+ PESKQLLT  +E+QL+ Q+Q+L RLE++K  LQSQFGR+PT+AEWA+
Sbjct: 249  MNQSDPLNKFLQSPESKQLLTSEQESQLVVQIQELLRLEDLKTSLQSQFGREPTMAEWAE 308

Query: 687  GVGLSCHALQTQLHCGNRSKEKLIHANLRLVVHIAKHYQGRGVSFQDLLQEGSMGLMKSV 866
            G GL+C  ++ QL CGNRS+EKLI ANLRLV +IAK YQGRG+S +DLLQEGS GL+KS+
Sbjct: 309  GAGLNCRKMKAQLRCGNRSREKLIQANLRLVHYIAKSYQGRGLSIEDLLQEGSTGLIKSI 368

Query: 867  EKFKPQAGCRFATYAYWWIRQSIRRAIFLHSRTIRLPENLYTLLGKVMEAKKFYIKEGNL 1046
            +KFK QAGCRFA+YAYWWI+Q+IR+AI+ HSRTIRLPE +Y  L KV+EAKK Y +EGNL
Sbjct: 369  KKFKTQAGCRFASYAYWWIKQAIRKAIYNHSRTIRLPEKVYNKLSKVLEAKKLYKEEGNL 428

Query: 1047 HPTKEELARRVEITVDKLELLLSAVRVPLSMQKAVWADQDTTFQEITADSAIEAPDLCVA 1226
            +PTKEELARRV I+ DK++ LL   R+P+SMQ  V ++ DTTFQEITAD AIE+P++ VA
Sbjct: 429  NPTKEELARRVGISPDKVDRLLFVARIPISMQNTVGSETDTTFQEITADCAIESPNMSVA 488

Query: 1227 KQQMRSHVRNLLSILSPKERRIIRLRFGIEDGYEKSLSEIGNRMGLCKERVRQLESRGLN 1406
            KQ MR HV N+L+IL PKERRIIRLRFG EDG EKSLSEIG   GL +ERVRQLESR L 
Sbjct: 489  KQLMRRHVLNVLNILRPKERRIIRLRFGFEDGEEKSLSEIGEIFGLSRERVRQLESRALY 548

Query: 1407 KLKQCLVSQQLDAYVNLLV 1463
            KLK+ LV Q LDAY +LL+
Sbjct: 549  KLKKYLVGQGLDAYADLLI 567