BLASTX nr result

ID: Glycyrrhiza24_contig00009568 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00009568
         (339 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD33039.1| Cyclin-like F-box [Medicago truncatula]                 81   1e-13
gb|AFK37960.1| unknown [Medicago truncatula]                           79   4e-13
ref|XP_003554122.1| PREDICTED: F-box protein At2g32560-like [Gly...    78   6e-13
ref|XP_003521127.1| PREDICTED: F-box protein At2g32560-like [Gly...    74   9e-12
ref|XP_003624978.1| F-box protein [Medicago truncatula] gi|35549...    62   4e-08

>gb|ABD33039.1| Cyclin-like F-box [Medicago truncatula]
          Length = 394

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 49/79 (62%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
 Frame = -2

Query: 293 MLYFLISFVSFVILFCKSFSIKPLSSWENGTTKLVSTEFWGKLLSLLVSRLRTGSTF--S 120
           M Y LISFVSFV++  KSF  KPLSS      KLVS  F GKLLS L SRL+T + F   
Sbjct: 1   MFYILISFVSFVMILSKSFINKPLSS---NVKKLVSNGFCGKLLSFLASRLKTRTIFLPF 57

Query: 119 SFLQFSLGMPLRKKSCLVS 63
           SF QFSLGM L+ KSCLVS
Sbjct: 58  SFFQFSLGMQLQNKSCLVS 76


>gb|AFK37960.1| unknown [Medicago truncatula]
          Length = 394

 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 48/79 (60%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
 Frame = -2

Query: 293 MLYFLISFVSFVILFCKSFSIKPLSSWENGTTKLVSTEFWGKLLSLLVSRLRTGSTF--S 120
           M Y LISFVSFV++  KSF  KPLSS      KLVS  F GKLLS L SRL+T + F   
Sbjct: 1   MFYILISFVSFVMILSKSFINKPLSS---NVKKLVSNGFCGKLLSFLASRLKTRTIFLPF 57

Query: 119 SFLQFSLGMPLRKKSCLVS 63
           SF  FSLGM L+ KSCLVS
Sbjct: 58  SFFHFSLGMQLQNKSCLVS 76


>ref|XP_003554122.1| PREDICTED: F-box protein At2g32560-like [Glycine max]
          Length = 399

 Score = 78.2 bits (191), Expect = 6e-13
 Identities = 56/99 (56%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
 Frame = -2

Query: 293 MLYFLISFVSFVILFCKSFSIKPLSSWENGTTKLVSTEFWGKLLSLLVSRLRTGSTFS-- 120
           MLYFLISFVSF+IL  KSF+ KP SS E G  KL S  FWG L S LVSRLR GST +  
Sbjct: 1   MLYFLISFVSFLIL-SKSFTSKPFSSGERGI-KLGSIGFWGSLSSWLVSRLRKGSTSTRF 58

Query: 119 SFLQFSLGMPLRKKSCLVSXXXXXXXXXXXXVFSLLDLP 3
           SFLQFSL M L+  S LVS            +  L DLP
Sbjct: 59  SFLQFSLDMSLKNNS-LVSKGENEEEEVKVSLLDLPDLP 96


>ref|XP_003521127.1| PREDICTED: F-box protein At2g32560-like [Glycine max]
          Length = 401

 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 54/101 (53%), Positives = 60/101 (59%), Gaps = 4/101 (3%)
 Frame = -2

Query: 293 MLYFLISFVSFVILFCKSFSIKPLSSWENGTTKLVSTEFWGKLLSLLVSRLRTGSTFS-- 120
           MLYFLISFVSF+IL  KSF+ +P SS E G  K  S  FWG L S LVSRL+ GST    
Sbjct: 1   MLYFLISFVSFLIL-SKSFTSRPFSSGERGI-KPGSIGFWGSLSSWLVSRLKKGSTTGTT 58

Query: 119 --SFLQFSLGMPLRKKSCLVSXXXXXXXXXXXXVFSLLDLP 3
             SF QFSLGM L KK+ LVS            +  L DLP
Sbjct: 59  PFSFFQFSLGM-LLKKNSLVSKVENEEEEGNVSLLDLPDLP 98


>ref|XP_003624978.1| F-box protein [Medicago truncatula] gi|355499993|gb|AES81196.1|
           F-box protein [Medicago truncatula]
          Length = 382

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 39/67 (58%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
 Frame = -2

Query: 257 ILFCKSFSIKPLSSWENGTTKLVSTEFWGKLLSLLVSRLRTGSTF--SSFLQFSLGMPLR 84
           ++  KSF  KPLSS      KLVS  F GKLLS L SRL+T + F   SF QFSLGM L+
Sbjct: 1   MILSKSFINKPLSS---NVKKLVSNGFCGKLLSFLASRLKTRTIFLPFSFFQFSLGMQLQ 57

Query: 83  KKSCLVS 63
            KSCLVS
Sbjct: 58  NKSCLVS 64


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