BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00009363
         (496 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003602198.1| RNA polymerase sigma factor rpoD [Medicago t...   239   1e-61
ref|XP_003523387.1| PREDICTED: RNA polymerase sigma factor rpoD-...   229   2e-58
dbj|BAM05478.1| sigma-like factor 5B [Glycine max]                    223   1e-56
ref|XP_003526693.1| PREDICTED: RNA polymerase sigma factor rpoD-...   223   1e-56
ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [...   194   6e-48

>ref|XP_003602198.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
           gi|355491246|gb|AES72449.1| RNA polymerase sigma factor
           rpoD [Medicago truncatula]
          Length = 514

 Score =  239 bits (611), Expect = 1e-61
 Identities = 121/165 (73%), Positives = 144/165 (87%)
 Frame = -1

Query: 496 RRGKKIGNGNKEEELNNDRVVRSRKTKAKRLNLDERIELKKDKDVEEVFPTRRKINAKNR 317
           RRGKKIG+ +KE+  N+DRVVR++KTKAKR+NLDERI LK  ++ E+V PTR+K N ++R
Sbjct: 128 RRGKKIGDVSKEDS-NSDRVVRNQKTKAKRMNLDERIALKTSENSEDVIPTRKKRNPRSR 186

Query: 316 IGKIEELVREYSILTDFGSLDWKKMKIPPVLPASEHALLFKLMQPMKALCQLKEDLQKEL 137
           + KI+EL+REYS+  D  SLDWKKMKIPPVLP+SEHA LFKLMQPMKAL Q+K+DLQKEL
Sbjct: 187 VEKIDELLREYSVPADLVSLDWKKMKIPPVLPSSEHAFLFKLMQPMKALLQVKDDLQKEL 246

Query: 136 AREPTDDEIAEATNMRVAQVKKAIEVGQAARNKLIKHNLRLVLFV 2
            REPT+DEIA+ATNM   QVKKAIEVG+AARNKLIKHNLRLVLFV
Sbjct: 247 EREPTEDEIADATNMHTTQVKKAIEVGRAARNKLIKHNLRLVLFV 291


>ref|XP_003523387.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
          Length = 509

 Score =  229 bits (583), Expect = 2e-58
 Identities = 117/167 (70%), Positives = 140/167 (83%), Gaps = 2/167 (1%)
 Frame = -1

Query: 496 RRGKKIGNGNKEEELNNDRVVR--SRKTKAKRLNLDERIELKKDKDVEEVFPTRRKINAK 323
           RRGKK+ + ++E+EL  DRVVR  ++  KAKRL LD+RI LK +K  +EV PTR+K N +
Sbjct: 120 RRGKKVVDESEEKELKGDRVVRRQNKNKKAKRLTLDQRISLKNNKRGDEVIPTRKKRNFR 179

Query: 322 NRIGKIEELVREYSILTDFGSLDWKKMKIPPVLPASEHALLFKLMQPMKALCQLKEDLQK 143
           NRI KIEEL+REYS+  DF S+DWK+M+IPPVL +SEHA LFKLMQPMKAL Q+KEDLQK
Sbjct: 180 NRIEKIEELIREYSVSNDFISMDWKRMRIPPVLSSSEHAWLFKLMQPMKALLQVKEDLQK 239

Query: 142 ELAREPTDDEIAEATNMRVAQVKKAIEVGQAARNKLIKHNLRLVLFV 2
           ELAREP D E+A+ATNM + QVKKAI+VGQAARNKLIKHNLRLVLFV
Sbjct: 240 ELAREPADGELADATNMSITQVKKAIDVGQAARNKLIKHNLRLVLFV 286


>dbj|BAM05478.1| sigma-like factor 5B [Glycine max]
          Length = 507

 Score =  223 bits (568), Expect = 1e-56
 Identities = 113/167 (67%), Positives = 138/167 (82%), Gaps = 2/167 (1%)
 Frame = -1

Query: 496 RRGKKIGNGNKEEELNNDRVVRS--RKTKAKRLNLDERIELKKDKDVEEVFPTRRKINAK 323
           RRGKK+ + ++E+EL  D VVR+  +  K KRLNLD+RI LK +K  +EV PTR+K N  
Sbjct: 118 RRGKKVVDESEEKELKGDWVVRNQNKNKKPKRLNLDQRISLKNNKSGDEVIPTRKKRNVG 177

Query: 322 NRIGKIEELVREYSILTDFGSLDWKKMKIPPVLPASEHALLFKLMQPMKALCQLKEDLQK 143
           N+I KIEEL+REYS+ TDF S+DWK+M+IPPVL +SEHA LFKLMQPMKAL Q+KEDLQ+
Sbjct: 178 NKIEKIEELIREYSVSTDFVSMDWKRMRIPPVLSSSEHAWLFKLMQPMKALLQVKEDLQQ 237

Query: 142 ELAREPTDDEIAEATNMRVAQVKKAIEVGQAARNKLIKHNLRLVLFV 2
           EL REP D E+A+ATNM + QV+KAI+VGQAARNKLIKHNLRLVLFV
Sbjct: 238 ELTREPADGELADATNMSITQVRKAIDVGQAARNKLIKHNLRLVLFV 284


>ref|XP_003526693.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
          Length = 507

 Score =  223 bits (568), Expect = 1e-56
 Identities = 113/167 (67%), Positives = 138/167 (82%), Gaps = 2/167 (1%)
 Frame = -1

Query: 496 RRGKKIGNGNKEEELNNDRVVRS--RKTKAKRLNLDERIELKKDKDVEEVFPTRRKINAK 323
           RRGKK+ + ++E+EL  D VVR+  +  K KRLNLD+RI LK +K  +EV PTR+K N  
Sbjct: 118 RRGKKVVDESEEKELKGDWVVRNQNKNKKPKRLNLDQRISLKNNKSGDEVIPTRKKRNVG 177

Query: 322 NRIGKIEELVREYSILTDFGSLDWKKMKIPPVLPASEHALLFKLMQPMKALCQLKEDLQK 143
           N+I KIEEL+REYS+ TDF S+DWK+M+IPPVL +SEHA LFKLMQPMKAL Q+KEDLQ+
Sbjct: 178 NKIEKIEELIREYSVSTDFVSMDWKRMRIPPVLSSSEHAWLFKLMQPMKALLQVKEDLQQ 237

Query: 142 ELAREPTDDEIAEATNMRVAQVKKAIEVGQAARNKLIKHNLRLVLFV 2
           EL REP D E+A+ATNM + QV+KAI+VGQAARNKLIKHNLRLVLFV
Sbjct: 238 ELTREPADGELADATNMSITQVRKAIDVGQAARNKLIKHNLRLVLFV 284


>ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223547495|gb|EEF48990.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 501

 Score =  194 bits (493), Expect = 6e-48
 Identities = 101/166 (60%), Positives = 129/166 (77%), Gaps = 1/166 (0%)
 Frame = -1

Query: 496 RRGKKIGNGNKEEELNNDR-VVRSRKTKAKRLNLDERIELKKDKDVEEVFPTRRKINAKN 320
           +R +K G G+++ E    R +VR+R  K KRL+LD+RI LKK+++ E V P R+K ++K+
Sbjct: 115 QRKRKTGEGDEKAENRTSRTIVRNRAKKTKRLSLDKRIALKKNEEEEVVGPIRKKKDSKD 174

Query: 319 RIGKIEELVREYSILTDFGSLDWKKMKIPPVLPASEHALLFKLMQPMKALCQLKEDLQKE 140
              KIEELVR YS  T+  SLDW+KMKIPPVLP++EHA LFKLMQPMK L  +K DLQK 
Sbjct: 175 DNEKIEELVRTYSASTNLVSLDWRKMKIPPVLPSTEHAWLFKLMQPMKTLLPVKADLQKN 234

Query: 139 LAREPTDDEIAEATNMRVAQVKKAIEVGQAARNKLIKHNLRLVLFV 2
           L R+PTD E+AEATNM V +V+K +EVG+AARNKLIKHNLRLV+FV
Sbjct: 235 LGRDPTDGELAEATNMNVEKVRKQLEVGRAARNKLIKHNLRLVMFV 280