BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00009362
         (563 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK49090.1| unknown [Medicago truncatula]                          192   4e-47
ref|XP_003602198.1| RNA polymerase sigma factor rpoD [Medicago t...   192   4e-47
ref|XP_003523387.1| PREDICTED: RNA polymerase sigma factor rpoD-...   149   2e-34
dbj|BAM05478.1| sigma-like factor 5B [Glycine max]                    145   4e-33
ref|XP_003526693.1| PREDICTED: RNA polymerase sigma factor rpoD-...   145   4e-33

>gb|AFK49090.1| unknown [Medicago truncatula]
          Length = 210

 Score =  192 bits (487), Expect = 4e-47
 Identities = 98/134 (73%), Positives = 107/134 (79%)
 Frame = +3

Query: 162 MGVVTVSSSAARTPLGLNTKFSSHHLALKRPLTVAFKGDKQNDTSVVATREKIPMHIEXX 341
           MGVVTVSSSAARTPLGLN KFS+HH  LKRPLTVAFKGDKQNDT++VAT+EKIP  ++  
Sbjct: 1   MGVVTVSSSAARTPLGLNAKFSTHHPVLKRPLTVAFKGDKQNDTALVATQEKIPTQVKPA 60

Query: 342 XXXXXXXXXXXXLPKRVRVVSTEEISPSSFDVDYNEAAAILENIYKLSPASDTCDADYID 521
                       LPK+ R V TEE  PSS DVDYNEAAAILENIYKLSP +D CDADYI+
Sbjct: 61  KTHKKRIAKTNKLPKKPRAVCTEETFPSSLDVDYNEAAAILENIYKLSPTTDICDADYIE 120

Query: 522 RKIKRVSRRGKKIG 563
           RKIKRVSRRGKKIG
Sbjct: 121 RKIKRVSRRGKKIG 134


>ref|XP_003602198.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
           gi|355491246|gb|AES72449.1| RNA polymerase sigma factor
           rpoD [Medicago truncatula]
          Length = 514

 Score =  192 bits (487), Expect = 4e-47
 Identities = 98/134 (73%), Positives = 107/134 (79%)
 Frame = +3

Query: 162 MGVVTVSSSAARTPLGLNTKFSSHHLALKRPLTVAFKGDKQNDTSVVATREKIPMHIEXX 341
           MGVVTVSSSAARTPLGLN KFS+HH  LKRPLTVAFKGDKQNDT++VAT+EKIP  ++  
Sbjct: 1   MGVVTVSSSAARTPLGLNAKFSTHHPVLKRPLTVAFKGDKQNDTALVATQEKIPTQVKPA 60

Query: 342 XXXXXXXXXXXXLPKRVRVVSTEEISPSSFDVDYNEAAAILENIYKLSPASDTCDADYID 521
                       LPK+ R V TEE  PSS DVDYNEAAAILENIYKLSP +D CDADYI+
Sbjct: 61  KTHKKRIAKTNKLPKKPRAVCTEETFPSSLDVDYNEAAAILENIYKLSPTTDICDADYIE 120

Query: 522 RKIKRVSRRGKKIG 563
           RKIKRVSRRGKKIG
Sbjct: 121 RKIKRVSRRGKKIG 134


>ref|XP_003523387.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
          Length = 509

 Score =  149 bits (377), Expect = 2e-34
 Identities = 86/134 (64%), Positives = 98/134 (73%), Gaps = 1/134 (0%)
 Frame = +3

Query: 162 MGVVTVSSSAARTPLGLNTKFSSHHLALKRPLTVAFKGDKQNDTSVVATREKIPMHIEXX 341
           MGVVTVS SA+RTPLG NTKFS+H L  KRPL VAFKGDK ND+++VAT+EKIP+ +E  
Sbjct: 1   MGVVTVSGSASRTPLGFNTKFSTHRL--KRPLIVAFKGDKHNDSALVATQEKIPVPVETA 58

Query: 342 XXXXXXXXXXXX-LPKRVRVVSTEEISPSSFDVDYNEAAAILENIYKLSPASDTCDADYI 518
                        LPKR       E SPSS DVDYNEAAA+LENIYKLSPAS T +A+ I
Sbjct: 59  KKTQKKRIGKSNKLPKR-------ESSPSSMDVDYNEAAAMLENIYKLSPASHTGNAECI 111

Query: 519 DRKIKRVSRRGKKI 560
           D KIKRVSRRGKK+
Sbjct: 112 DDKIKRVSRRGKKV 125


>dbj|BAM05478.1| sigma-like factor 5B [Glycine max]
          Length = 507

 Score =  145 bits (366), Expect = 4e-33
 Identities = 86/134 (64%), Positives = 99/134 (73%), Gaps = 1/134 (0%)
 Frame = +3

Query: 162 MGVVTVSSSAARTPLGLNTKFSSHHLALKRPLTVAFKGDKQNDTSVVATREKIPMHIEXX 341
           MGVVTVSSSAARTPLGLNTKF ++ L  KRPL VAFKGDK ND+++VAT+EKIP+ +E  
Sbjct: 1   MGVVTVSSSAARTPLGLNTKFCNNRL--KRPLIVAFKGDKHNDSALVATQEKIPVPVETA 58

Query: 342 XXXXXXXXXXXX-LPKRVRVVSTEEISPSSFDVDYNEAAAILENIYKLSPASDTCDADYI 518
                        LPKR       E SPSS DVDYNEAAA+LEN+YKLSPASD  +A+ I
Sbjct: 59  KKTQKKRIGKTNKLPKR-------ESSPSSMDVDYNEAAAMLENLYKLSPASD--NAECI 109

Query: 519 DRKIKRVSRRGKKI 560
           D KIKRVSRRGKK+
Sbjct: 110 DGKIKRVSRRGKKV 123


>ref|XP_003526693.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
          Length = 507

 Score =  145 bits (366), Expect = 4e-33
 Identities = 86/134 (64%), Positives = 99/134 (73%), Gaps = 1/134 (0%)
 Frame = +3

Query: 162 MGVVTVSSSAARTPLGLNTKFSSHHLALKRPLTVAFKGDKQNDTSVVATREKIPMHIEXX 341
           MGVVTVSSSAARTPLGLNTKF ++ L  KRPL VAFKGDK ND+++VAT+EKIP+ +E  
Sbjct: 1   MGVVTVSSSAARTPLGLNTKFCNNRL--KRPLIVAFKGDKHNDSALVATQEKIPVPVETA 58

Query: 342 XXXXXXXXXXXX-LPKRVRVVSTEEISPSSFDVDYNEAAAILENIYKLSPASDTCDADYI 518
                        LPKR       E SPSS DVDYNEAAA+LEN+YKLSPASD  +A+ I
Sbjct: 59  KKTQKKRIGKTNKLPKR-------ESSPSSMDVDYNEAAAMLENLYKLSPASD--NAECI 109

Query: 519 DRKIKRVSRRGKKI 560
           D KIKRVSRRGKK+
Sbjct: 110 DGKIKRVSRRGKKV 123