BLASTX nr result
ID: Glycyrrhiza24_contig00008666
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza24_contig00008666
(256 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003621319.1| Pentatricopeptide repeat-containing protein ... 162 3e-38
ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containi... 161 5e-38
ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containi... 160 1e-37
ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containi... 142 3e-32
ref|XP_002305377.1| predicted protein [Populus trichocarpa] gi|2... 138 4e-31
>ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496334|gb|AES77537.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 605
Score = 162 bits (410), Expect = 3e-38
Identities = 75/85 (88%), Positives = 80/85 (94%)
Frame = +2
Query: 2 FDEMPVRDMVSWNTMLDGYAKAGEMDKAFELFQRMDERDIVSWSTMVCGYSKAGDMDMAR 181
FDEMP RD VSWNTMLDG+ KAGEMDKAF+LF+RM ERDIVSWSTMVCGYSK GDMDMAR
Sbjct: 213 FDEMPERDRVSWNTMLDGFTKAGEMDKAFKLFERMAERDIVSWSTMVCGYSKNGDMDMAR 272
Query: 182 MLFDKCPMKNLVLWTTIISGYAEKG 256
MLFD+CP+KNLVLWTTIISGYAEKG
Sbjct: 273 MLFDRCPVKNLVLWTTIISGYAEKG 297
Score = 72.0 bits (175), Expect = 5e-11
Identities = 29/73 (39%), Positives = 51/73 (69%)
Frame = +2
Query: 38 NTMLDGYAKAGEMDKAFELFQRMDERDIVSWSTMVCGYSKAGDMDMARMLFDKCPMKNLV 217
N+++D Y + G+++ A ++F M+ERD+VSW++MV G K GD+D A +FD+ P ++ V
Sbjct: 163 NSLIDCYCRCGDVEMAMKVFSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDEMPERDRV 222
Query: 218 LWTTIISGYAEKG 256
W T++ G+ + G
Sbjct: 223 SWNTMLDGFTKAG 235
Score = 65.5 bits (158), Expect = 4e-09
Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Frame = +2
Query: 2 FDEMPVRDMVSWNTMLDGYAKAGEMDKAFELFQRMDERDIVSWSTMVCGYSKAGDMDMAR 181
F+ M RD+VSW+TM+ GY+K G+MD A LF R +++V W+T++ GY++ G + A
Sbjct: 244 FERMAERDIVSWSTMVCGYSKNGDMDMARMLFDRCPVKNLVLWTTIISGYAEKGQVKEAM 303
Query: 182 MLFDKCPMKNLVL----WTTIISGYAEKG 256
L D+ L L + +I++ AE G
Sbjct: 304 NLCDEMEKSGLRLDDGFFISILAACAESG 332
>ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 161 bits (408), Expect = 5e-38
Identities = 73/85 (85%), Positives = 81/85 (95%)
Frame = +2
Query: 2 FDEMPVRDMVSWNTMLDGYAKAGEMDKAFELFQRMDERDIVSWSTMVCGYSKAGDMDMAR 181
FDEMP RDMVSWNTMLDGYAKAGEMD+AFELF+RM +R+IVSWSTMVCGYSK GDMDMAR
Sbjct: 211 FDEMPERDMVSWNTMLDGYAKAGEMDRAFELFERMPQRNIVSWSTMVCGYSKGGDMDMAR 270
Query: 182 MLFDKCPMKNLVLWTTIISGYAEKG 256
+LFD+CP KN+VLWTTII+GYAEKG
Sbjct: 271 VLFDRCPAKNVVLWTTIIAGYAEKG 295
Score = 64.7 bits (156), Expect = 8e-09
Identities = 28/65 (43%), Positives = 45/65 (69%)
Frame = +2
Query: 2 FDEMPVRDMVSWNTMLDGYAKAGEMDKAFELFQRMDERDIVSWSTMVCGYSKAGDMDMAR 181
F+ MP R++VSW+TM+ GY+K G+MD A LF R +++V W+T++ GY++ G + A
Sbjct: 242 FERMPQRNIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYAEKGFVREAT 301
Query: 182 MLFDK 196
L+ K
Sbjct: 302 ELYGK 306
>ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 160 bits (405), Expect = 1e-37
Identities = 74/85 (87%), Positives = 80/85 (94%)
Frame = +2
Query: 2 FDEMPVRDMVSWNTMLDGYAKAGEMDKAFELFQRMDERDIVSWSTMVCGYSKAGDMDMAR 181
FDEMP RDMVSWNTMLDGYAKAGEMD AFELF+RM R+IVSWSTMVCGYSK GDMDMAR
Sbjct: 211 FDEMPDRDMVSWNTMLDGYAKAGEMDTAFELFERMPWRNIVSWSTMVCGYSKGGDMDMAR 270
Query: 182 MLFDKCPMKNLVLWTTIISGYAEKG 256
MLFD+CP+KN+VLWTTII+GYAEKG
Sbjct: 271 MLFDRCPVKNVVLWTTIIAGYAEKG 295
Score = 62.8 bits (151), Expect = 3e-08
Identities = 28/65 (43%), Positives = 44/65 (67%)
Frame = +2
Query: 2 FDEMPVRDMVSWNTMLDGYAKAGEMDKAFELFQRMDERDIVSWSTMVCGYSKAGDMDMAR 181
F+ MP R++VSW+TM+ GY+K G+MD A LF R +++V W+T++ GY++ G A
Sbjct: 242 FERMPWRNIVSWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYAEKGLAREAT 301
Query: 182 MLFDK 196
L+ K
Sbjct: 302 ELYGK 306
>ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 142 bits (358), Expect = 3e-32
Identities = 66/85 (77%), Positives = 75/85 (88%)
Frame = +2
Query: 2 FDEMPVRDMVSWNTMLDGYAKAGEMDKAFELFQRMDERDIVSWSTMVCGYSKAGDMDMAR 181
FDEMP RD VSWNT+LDGY KAGEM+ AFELF++M R++VSWSTMV GYSKAGDMDMAR
Sbjct: 206 FDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMVLGYSKAGDMDMAR 265
Query: 182 MLFDKCPMKNLVLWTTIISGYAEKG 256
+LFDK P+KNLV WT +ISGYAEKG
Sbjct: 266 ILFDKMPVKNLVPWTIMISGYAEKG 290
Score = 65.1 bits (157), Expect = 6e-09
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Frame = +2
Query: 38 NTMLDGYAKAG--EMDKAFELFQRMDERDIVSWSTMVCGYSKAGDMDMARMLFDKCPMKN 211
N+++D Y K G + A ++F+ M ERD VSW++M+ G K G++ AR LFD+ P ++
Sbjct: 154 NSLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGELGEARRLFDEMPERD 213
Query: 212 LVLWTTIISGYAEKG 256
V W TI+ GY + G
Sbjct: 214 TVSWNTILDGYVKAG 228
>ref|XP_002305377.1| predicted protein [Populus trichocarpa] gi|222848341|gb|EEE85888.1|
predicted protein [Populus trichocarpa]
Length = 427
Score = 138 bits (348), Expect = 4e-31
Identities = 63/85 (74%), Positives = 74/85 (87%)
Frame = +2
Query: 2 FDEMPVRDMVSWNTMLDGYAKAGEMDKAFELFQRMDERDIVSWSTMVCGYSKAGDMDMAR 181
FDEMP++D VSWNT+LDGY KAGEM+KAF LF+ M ER++VSWSTMV GY KAGDM+MAR
Sbjct: 35 FDEMPMKDAVSWNTILDGYVKAGEMNKAFGLFESMPERNVVSWSTMVSGYCKAGDMEMAR 94
Query: 182 MLFDKCPMKNLVLWTTIISGYAEKG 256
MLFD+ P+KNLV WT I+SGYA KG
Sbjct: 95 MLFDRMPVKNLVSWTIIVSGYAVKG 119
Score = 64.7 bits (156), Expect = 8e-09
Identities = 28/55 (50%), Positives = 39/55 (70%)
Frame = +2
Query: 92 LFQRMDERDIVSWSTMVCGYSKAGDMDMARMLFDKCPMKNLVLWTTIISGYAEKG 256
LF+ MDERD+VSW++M+ G K G++ A LFD+ PMK+ V W TI+ GY + G
Sbjct: 3 LFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEMPMKDAVSWNTILDGYVKAG 57