BLASTX nr result
ID: Glycyrrhiza24_contig00007890
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza24_contig00007890
(810 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ... 129 1e-27
gb|AAD37019.2| putative non-LTR retrolelement reverse transcript... 120 5e-25
gb|ABW81176.1| non-LTR reverse transcriptase [Arabidopsis cebenn... 114 3e-23
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga... 105 1e-20
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 100 5e-19
>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
gi|7268307|emb|CAB78601.1| reverse transcriptase like
protein [Arabidopsis thaliana]
Length = 929
Score = 129 bits (323), Expect = 1e-27
Identities = 60/162 (37%), Positives = 94/162 (58%)
Frame = +2
Query: 14 FKFLSPWLDHPMSQQVVDNNWHVSASCEDNIAHLTSSLRRWNDEVFGNIFKRKERIIQQL 193
F+F + WL H ++++ +W S + L L++WN EVFGNI RKE+++ L
Sbjct: 55 FRFEAAWLSHEGFKELLTASWDTGLSTPVALNRLRWQLKKWNKEVFGNIHVRKEKVVSDL 114
Query: 194 EGINRVFFTEPNHXXXXXXXXXXEEYNSILMQEEAYWFHQAKSKWLALGDRNTRYFHQST 373
+ + + +E++ +L QEE WF +++ K LALGDRNT +FH ST
Sbjct: 115 KAVQDLLEVVQTDDLLMKEDTLLKEFDVLLHQEETLWFQKSREKLLALGDRNTTFFHTST 174
Query: 374 LARRCRNNISALKDGYENWVCDKEGVKKVVLDFYQDLFSLGD 499
+ RR RN I LKD + WV +KE ++K+ +D+Y+ L+SL D
Sbjct: 175 VIRRRRNRIEMLKDSEDRWVTEKEALEKLAMDYYRKLYSLED 216
Score = 69.7 bits (169), Expect = 7e-10
Identities = 37/75 (49%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Frame = +2
Query: 503 LEW*SYSTFSFAPRA--RQGDPIFPYLFVIAMEWLGHKIIESVNEGSWSPLRFGRGMGPS 676
L W T SF P RQGDPI PYLFV+ +E L H+I +V G W + +G GP
Sbjct: 432 LLWNGEKTDSFTPERGLRQGDPISPYLFVLCIERLCHQIETAVGRGDWKSISISQG-GPK 490
Query: 677 LSHMIFADDLVLVAE 721
+SH+ FADDL+L AE
Sbjct: 491 VSHVCFADDLILFAE 505
>gb|AAD37019.2| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 855
Score = 120 bits (300), Expect = 5e-25
Identities = 53/162 (32%), Positives = 93/162 (57%)
Frame = +2
Query: 14 FKFLSPWLDHPMSQQVVDNNWHVSASCEDNIAHLTSSLRRWNDEVFGNIFKRKERIIQQL 193
F+F + WL H + ++ +W+ +A L S L++WN EVFG++ +RKE ++ ++
Sbjct: 657 FRFEAAWLTHSGFKDLLQASWNTEGETPVALAALKSKLKKWNREVFGDVNRRKESLMNEI 716
Query: 194 EGINRVFFTEPNHXXXXXXXXXXEEYNSILMQEEAYWFHQAKSKWLALGDRNTRYFHQST 373
+ + + +E++ +L QEE WF +++ KW+ LGDRNT+YFH T
Sbjct: 717 KVVQELLEINQTDNLLSKEEELIKEFDVVLEQEEVLWFQKSREKWVELGDRNTKYFHTMT 776
Query: 374 LARRCRNNISALKDGYENWVCDKEGVKKVVLDFYQDLFSLGD 499
+ RR RN I LK +WV ++ ++K+ +D+Y L+S+ D
Sbjct: 777 VVRRRRNRIEMLKADDGSWVSQQQELEKMAVDYYSRLYSMED 818
>gb|ABW81176.1| non-LTR reverse transcriptase [Arabidopsis cebennensis]
Length = 464
Score = 114 bits (284), Expect = 3e-23
Identities = 50/133 (37%), Positives = 81/133 (60%)
Frame = +2
Query: 101 NIAHLTSSLRRWNDEVFGNIFKRKERIIQQLEGINRVFFTEPNHXXXXXXXXXXEEYNSI 280
++ + L++WN EVFGNI +RK++++Q+++ + +E+ +
Sbjct: 242 DLLYSKEKLKKWNKEVFGNIQQRKDKLVQEIQAVQDFLEHNQTDDLLNKEDVLIKEFEVV 301
Query: 281 LMQEEAYWFHQAKSKWLALGDRNTRYFHQSTLARRCRNNISALKDGYENWVCDKEGVKKV 460
L QEE WF +++ KW+ALGDRNT+YFH ST+ RR RN I LKD WV + E + K+
Sbjct: 302 LEQEEIVWFQKSREKWIALGDRNTKYFHTSTIIRRRRNQIEMLKDDEGKWVEEPEELAKM 361
Query: 461 VLDFYQDLFSLGD 499
+++YQ L+S+ D
Sbjct: 362 AVEYYQKLYSVED 374
>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1378
Score = 105 bits (262), Expect = 1e-20
Identities = 51/159 (32%), Positives = 83/159 (52%)
Frame = +2
Query: 14 FKFLSPWLDHPMSQQVVDNNWHVSASCEDNIAHLTSSLRRWNDEVFGNIFKRKERIIQQL 193
F+F + WL+H + + V NW+ A + L +WN E F NIF++K + ++
Sbjct: 246 FRFQAAWLNHQVFCEFVRKNWNADAPIVPFLKSFADKLNKWNKEEFYNIFRKKSELWARI 305
Query: 194 EGINRVFFTEPNHXXXXXXXXXXEEYNSILMQEEAYWFHQAKSKWLALGDRNTRYFHQST 373
G+ + T + E + +L EE WF +++ + + GDRNTRYFH ST
Sbjct: 306 SGVQALLSTGRQNHLIKLEAKLRREMDIVLDDEETLWFQKSRMEAICDGDRNTRYFHLST 365
Query: 374 LARRCRNNISALKDGYENWVCDKEGVKKVVLDFYQDLFS 490
+ RR RN I L++ W+ + VK +VL +++ LFS
Sbjct: 366 VIRRSRNRIDMLQNNDGEWISNPMEVKAMVLGYWKHLFS 404
Score = 78.6 bits (192), Expect = 2e-12
Identities = 39/87 (44%), Positives = 53/87 (60%)
Frame = +2
Query: 548 RQGDPIFPYLFVIAMEWLGHKIIESVNEGSWSPLRFGRGMGPSLSHMIFADDLVLVAEXX 727
RQGDP+ PYL+VI ME L H I + V G+W P++ R GP +S++ FADDL+L +E
Sbjct: 640 RQGDPLSPYLYVICMERLAHLIDQEVTNGNWKPVKASRN-GPPISNLAFADDLILFSEAS 698
Query: 728 XXXXXNIRRILDDFCNVFGEKVNFHKT 808
++ LD FC G KVN K+
Sbjct: 699 VEQAQVMKWCLDRFCEASGSKVNEDKS 725
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 100 bits (248), Expect = 5e-19
Identities = 48/128 (37%), Positives = 76/128 (59%)
Frame = +2
Query: 125 LRRWNDEVFGNIFKRKERIIQQLEGINRVFFTEPNHXXXXXXXXXXEEYNSILMQEEAYW 304
LR+WN EVFG+I RKE+++ ++ + + + +E + +L QEE W
Sbjct: 140 LRKWNREVFGDIHVRKEKLVADIKEVQDLLGVVLSDDLLAKEEVLLKEMDLVLEQEETLW 199
Query: 305 FHQAKSKWLALGDRNTRYFHQSTLARRCRNNISALKDGYENWVCDKEGVKKVVLDFYQDL 484
F +++ K++ LGDRNT +FH ST+ RR RN I +LK + WV DK ++ + L +Y+ L
Sbjct: 200 FQKSREKYIELGDRNTTFFHTSTIIRRRRNRIESLKGDDDRWVTDKVELEAMALTYYKRL 259
Query: 485 FSLGDQLE 508
+SL D E
Sbjct: 260 YSLEDVSE 267
Score = 83.2 bits (204), Expect = 6e-14
Identities = 46/102 (45%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
Frame = +2
Query: 509 W*SYSTFSFAPRA--RQGDPIFPYLFVIAMEWLGHKIIESVNEGSWSPLRFGRGMGPSLS 682
W T SF P RQGDP+ PYLFV+ +E L H I SV + W P+ G G LS
Sbjct: 482 WNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGKREWKPIAVSCG-GSKLS 540
Query: 683 HMIFADDLVLVAEXXXXXXXNIRRILDDFCNVFGEKVNFHKT 808
H+ FADDL+L AE IRR+L+ FC G+KV+ K+
Sbjct: 541 HVCFADDLILFAEASVAQIRIIRRVLERFCEASGQKVSLEKS 582