BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00007582
         (460 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28306.1| RNA polymerase subunit, RPB5; RNA polymerase Rpb5...   227   9e-58
ref|XP_003539245.1| PREDICTED: DNA-directed RNA polymerases I, I...   197   7e-49
ref|XP_003522225.1| PREDICTED: DNA-directed RNA polymerases I, I...   187   8e-46
ref|XP_002513077.1| DNA-directed RNA polymerase II, putative [Ri...   185   4e-45
ref|XP_002297750.1| predicted protein [Populus trichocarpa] gi|2...   183   1e-44

>gb|ABD28306.1| RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal
           [Medicago truncatula]
          Length = 224

 Score =  227 bits (578), Expect = 9e-58
 Identities = 113/145 (77%), Positives = 132/145 (91%)
 Frame = +1

Query: 1   RSNPSIKVQVVFTGTEYIKKGTITSIYNQIVDKERLSRLILIVQSKMTAYARKELENCPY 180
           RSNPSIKVQVVF GT+ I+K  +  I +QIVDKERLSRLIL++QSKMT+YARKELENCP+
Sbjct: 80  RSNPSIKVQVVFPGTDDIRKSNLIVIQSQIVDKERLSRLILVMQSKMTSYARKELENCPF 139

Query: 181 KVEIIKMNDLLVNITKHVLQPKYEVLTADEKQELLKKYRLEDKQLPCMLRTDAIARYYGL 360
           KVEII++NDLLVN+TKHVLQPKYEVLTA+EKQ+LL KY++E+KQLP MLRTDAIA YYGL
Sbjct: 140 KVEIIQLNDLLVNVTKHVLQPKYEVLTANEKQKLLNKYKVEEKQLPHMLRTDAIASYYGL 199

Query: 361 EKGQVVKITYSGGMVDSLVTYRCVV 435
           EKGQVVKI++SG M +SLV YRCVV
Sbjct: 200 EKGQVVKISHSGEMFNSLVMYRCVV 224


>ref|XP_003539245.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Glycine max]
          Length = 214

 Score =  197 bits (501), Expect = 7e-49
 Identities = 99/144 (68%), Positives = 121/144 (84%)
 Frame = +1

Query: 4   SNPSIKVQVVFTGTEYIKKGTITSIYNQIVDKERLSRLILIVQSKMTAYARKELENCPYK 183
           SNPS  VQVVF GT+ I+KGT+  I  QI DK RL  LIL+VQSKMT++A+K+LE+ P+K
Sbjct: 71  SNPSNTVQVVFAGTDDIRKGTVNEICTQIADKGRLKGLILVVQSKMTSFAKKDLESLPFK 130

Query: 184 VEIIKMNDLLVNITKHVLQPKYEVLTADEKQELLKKYRLEDKQLPCMLRTDAIARYYGLE 363
           VEII+++DLLVNITKHVLQPKYE+LT DEK+ LL K+ L++KQLP ML+TDAIA YYGLE
Sbjct: 131 VEIIRIDDLLVNITKHVLQPKYEILTDDEKKALLTKHNLDEKQLPHMLKTDAIASYYGLE 190

Query: 364 KGQVVKITYSGGMVDSLVTYRCVV 435
           KGQVVKIT+ G +VD  V+YRCVV
Sbjct: 191 KGQVVKITHRGPVVDFHVSYRCVV 214


>ref|XP_003522225.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Glycine max]
          Length = 183

 Score =  187 bits (475), Expect = 8e-46
 Identities = 94/138 (68%), Positives = 116/138 (84%)
 Frame = +1

Query: 22  VQVVFTGTEYIKKGTITSIYNQIVDKERLSRLILIVQSKMTAYARKELENCPYKVEIIKM 201
           VQVVF G + I+KGT+  I +QI DK  L  LIL+V+SKMT++A+K+LEN P+KVE IK+
Sbjct: 46  VQVVFVGPKEIRKGTVNEICSQIADKGSLKWLILVVKSKMTSFAKKDLENFPFKVETIKI 105

Query: 202 NDLLVNITKHVLQPKYEVLTADEKQELLKKYRLEDKQLPCMLRTDAIARYYGLEKGQVVK 381
           +DLLVNITKHVLQPKYE+LT DEKQ LL K+ L++KQLP ML+TD IARYYGLEKGQVVK
Sbjct: 106 DDLLVNITKHVLQPKYEILTDDEKQALLTKHNLDEKQLPHMLKTDTIARYYGLEKGQVVK 165

Query: 382 ITYSGGMVDSLVTYRCVV 435
           IT+SG +V+  V+YRCVV
Sbjct: 166 ITHSGPVVNFDVSYRCVV 183


>ref|XP_002513077.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
           gi|223548088|gb|EEF49580.1| DNA-directed RNA polymerase
           II, putative [Ricinus communis]
          Length = 239

 Score =  185 bits (469), Expect = 4e-45
 Identities = 97/143 (67%), Positives = 114/143 (79%)
 Frame = +1

Query: 4   SNPSIKVQVVFTGTEYIKKGTITSIYNQIVDKERLSRLILIVQSKMTAYARKELENCPYK 183
           S+P  K+ VVF GTE IK   I  +  QI +KE L+ LILI+QSKM  YARKEL   P K
Sbjct: 96  SHPDKKMVVVFMGTEEIKLANIRGLLCQIKNKESLNGLILILQSKMNHYARKELGQFPSK 155

Query: 184 VEIIKMNDLLVNITKHVLQPKYEVLTADEKQELLKKYRLEDKQLPCMLRTDAIARYYGLE 363
           VEI  ++DLLVNITKHVL+P++EVLTA++KQ+LL K+  EDKQLP ML TDAI+RYYG E
Sbjct: 156 VEIFHISDLLVNITKHVLKPRHEVLTAEQKQQLLNKFSSEDKQLPRMLVTDAISRYYGFE 215

Query: 364 KGQVVKITYSGGMVDSLVTYRCV 432
           KGQVVKITYSGG+VDSLVTYRCV
Sbjct: 216 KGQVVKITYSGGLVDSLVTYRCV 238


>ref|XP_002297750.1| predicted protein [Populus trichocarpa] gi|222845008|gb|EEE82555.1|
           predicted protein [Populus trichocarpa]
          Length = 233

 Score =  183 bits (464), Expect = 1e-44
 Identities = 89/144 (61%), Positives = 116/144 (80%)
 Frame = +1

Query: 1   RSNPSIKVQVVFTGTEYIKKGTITSIYNQIVDKERLSRLILIVQSKMTAYARKELENCPY 180
           RS P  K  V+F GT+ IK   I ++Y QI++KE L  LILI+QSKM  +A+KELE  P+
Sbjct: 89  RSIPHKKTLVMFLGTDEIKTANIRTVYGQILNKESLHGLILILQSKMNHFAKKELEKFPF 148

Query: 181 KVEIIKMNDLLVNITKHVLQPKYEVLTADEKQELLKKYRLEDKQLPCMLRTDAIARYYGL 360
           KVE+ ++ DLLVNITKHVLQP+ ++LTA++KQ+++ KY+LEDKQLP ML +DAI +YYGL
Sbjct: 149 KVEVFQITDLLVNITKHVLQPQMDILTAEQKQQVMNKYKLEDKQLPRMLESDAIVQYYGL 208

Query: 361 EKGQVVKITYSGGMVDSLVTYRCV 432
           +KGQ+VKITYSG +VD LVTYRCV
Sbjct: 209 QKGQMVKITYSGEIVDHLVTYRCV 232