BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00007090
         (3786 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  2083   0.0  
ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  2081   0.0  
ref|XP_003603409.1| Rna-dependent RNA polymerase [Medicago trunc...  2011   0.0  
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...  1765   0.0  
ref|XP_002308662.1| rna-dependent RNA polymerase [Populus tricho...  1758   0.0  

>ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Glycine max]
          Length = 1204

 Score = 2083 bits (5396), Expect = 0.0
 Identities = 1025/1180 (86%), Positives = 1084/1180 (91%), Gaps = 4/1180 (0%)
 Frame = -1

Query: 3786 SNDLVTFLEDKFGLVDSCRLKTSWTPPESYPEFSIIDTAQIKKTDDYKKVEPHAFVHFAS 3607
            ++DLV +LEDK GLV  CRLKTSWTPPESYPEF+IIDTA I++TD+YKKVEPHAFVHFAS
Sbjct: 26   ASDLVNYLEDKIGLVYRCRLKTSWTPPESYPEFNIIDTANIRRTDNYKKVEPHAFVHFAS 85

Query: 3606 AESATDAFNASGCCDLFWKSQALKIIRGPQNPNLLNQRRRDTAPFKMSDVLVEIGTLVSP 3427
             ES T A NASGCCDLF K+Q LK+  GP+NP  LNQRRR T PFKMSDVLVEIGTLVSP
Sbjct: 86   PESVTAALNASGCCDLFLKNQPLKVSCGPENPYFLNQRRRTTTPFKMSDVLVEIGTLVSP 145

Query: 3426 EEFYVAWRGPDKGVNFLVDPFDRMCKLCFNRDVAFSFKGIEKKAVIKCDFKVGFLVRDIY 3247
             EF+V+WRGPDKGV FLVDPFD MC+ CF+RD AFSFKGIEKKAVIKCDF+VGFLVRDI 
Sbjct: 146  GEFFVSWRGPDKGVKFLVDPFDGMCRFCFSRDTAFSFKGIEKKAVIKCDFQVGFLVRDIN 205

Query: 3246 EIRRYNDTSYHVVLLQLASSPLVWYRTADDDIEEPVTYDLLDDDDPWIRTTDFTPSGAIG 3067
            EI+RYNDTSY VVLL LASSP VWYRTADDDIEE V +DLLDDDDPWIRTTDFTPSGAIG
Sbjct: 206  EIKRYNDTSYLVVLLHLASSPWVWYRTADDDIEESVPFDLLDDDDPWIRTTDFTPSGAIG 265

Query: 3066 RCNFYRISIPPRYGAKLTKAMGYLGGQRVQ--EVPLKRPLRIRDEPGFGVSMSDAFFHIH 2893
            RCNFYRISIPPR+GAKL KAM YL GQRVQ  E+ LK+ LR  +EP FGV MSDAFF+IH
Sbjct: 266  RCNFYRISIPPRHGAKLMKAMLYLKGQRVQMQELALKQTLRTLNEPDFGVPMSDAFFYIH 325

Query: 2892 FQKGITFDIMFLINAIVHKGIFNQHSLSDRFFELLRNQPKEVNVAALKHLCSYKRPVFDA 2713
            FQK I FDIMFL+NAIVHKGIFNQH LSDRFFELL+NQPKE+NVAALKHLCSYKRPVFDA
Sbjct: 326  FQKDIAFDIMFLVNAIVHKGIFNQHRLSDRFFELLKNQPKELNVAALKHLCSYKRPVFDA 385

Query: 2712 AKRLKTVQEWLLRNPKLYQSSKQLDDIVEVRRLVITPTKAYCVPPEVELSNRVLRRFREV 2533
             KRLK VQEWLLRNPKLYQ SKQLDDIVEVRRLVITP+KAYC+PPEVELSNRVLR+FREV
Sbjct: 386  TKRLKIVQEWLLRNPKLYQISKQLDDIVEVRRLVITPSKAYCIPPEVELSNRVLRKFREV 445

Query: 2532 SDHFLRVTFMDEGMQTINVNALNYYVAPIVREITSNSFPQKTKIYKRVKTILDEGFYFCG 2353
            SD FLRVTFMDEGMQTINVNALNYYVAPIV+EITSNSF Q+TKIYKRVKTIL++GFYFCG
Sbjct: 446  SDCFLRVTFMDEGMQTINVNALNYYVAPIVKEITSNSFSQRTKIYKRVKTILEQGFYFCG 505

Query: 2352 RKYSFLAFSSNQLRDRSAWFFAEGSDISCDAIRNWMGKFNHKNVAKCAARMGQCFSSTYA 2173
            RKYSFLAFSSNQLRDRSAWFFAE   I CD IRNWMGKFN +NVAKCAARMGQCFSSTYA
Sbjct: 506  RKYSFLAFSSNQLRDRSAWFFAEDK-IRCDDIRNWMGKFNQRNVAKCAARMGQCFSSTYA 564

Query: 2172 TVEVAANEVNRMLPDVTRNNYVFSDGIGIITPDLAVEVAEKLKLDNVPSAYQIRFAGFKG 1993
            TVEVAANEVN MLPDV RNNY+FSDGIG+IT DLA EVAEKLKLDNVPSAYQIR+AGFKG
Sbjct: 565  TVEVAANEVNSMLPDVERNNYIFSDGIGVITHDLAREVAEKLKLDNVPSAYQIRYAGFKG 624

Query: 1992 VVASWPAKGDGFRLQLRPSMNKFQSTHSTLEICSWTRFQPGFLNRQIITLLSALDVSDEI 1813
            VVASWPAKGDG RL LRPSMNKFQSTH+ LEIC+WTRFQPGFLNRQIITLLSAL V DE+
Sbjct: 625  VVASWPAKGDGVRLSLRPSMNKFQSTHNILEICAWTRFQPGFLNRQIITLLSALGVPDEV 684

Query: 1812 FWKMQEVMISRLNQMLIDVDVAFDVLTKSCAEHGNAAAIMLSCGFSPQTEPHLRGMLTSI 1633
            FW+MQE M+ +LNQML+D D+AFDVLTKSCAEHGNAAAIMLSCGFSP TEPHLRGMLTS 
Sbjct: 685  FWQMQEAMLLKLNQMLVDADIAFDVLTKSCAEHGNAAAIMLSCGFSPLTEPHLRGMLTST 744

Query: 1632 RAAQLWGLREKSRIFVSSGRWLMGVLDESGVLEQGQCFVQVSTPSLENCFSKHGSRFSET 1453
            RAAQLWGLREKSRIFVSSGRWLMGVLDESGVLEQGQCFVQVSTPSLENCFSKHGSRFSET
Sbjct: 745  RAAQLWGLREKSRIFVSSGRWLMGVLDESGVLEQGQCFVQVSTPSLENCFSKHGSRFSET 804

Query: 1452 KNLQVVKGYVVIAKNPCLHPGDVRVLEAVDAPDLHHLYDCLVFPQKGDRPHTNEASGSDL 1273
            KNL VVKG+V+IAKNPCLHPGDVRVLEAVDAPDLHHL DCLVFPQKGDRPHTNEASGSDL
Sbjct: 805  KNLHVVKGFVIIAKNPCLHPGDVRVLEAVDAPDLHHLNDCLVFPQKGDRPHTNEASGSDL 864

Query: 1272 DGDLYFVTWEENLIPPSKRSWIPMEYTAQESKLQTRQVTIRDIIEFFAKNMVNEHLGAIC 1093
            DGDLYFVTW+ENLIPPSKRSWIPMEY  QESKL+TRQV  RDIIEFF +NMVNEHLGAIC
Sbjct: 865  DGDLYFVTWDENLIPPSKRSWIPMEYAPQESKLKTRQVMTRDIIEFFVRNMVNEHLGAIC 924

Query: 1092 NAHVVHADSSDYGAMDEKCITLAELAATAVDFPKTGKLVTMPSHLKPKLYPDFMGKEQHQ 913
            NAHVVHADSSDYGA+DEKCI LAELAATAVDFPKTGKLVTMP HLKPKLYPDFMGKE+HQ
Sbjct: 925  NAHVVHADSSDYGALDEKCIHLAELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKERHQ 984

Query: 912  SYKSTKILGRLYRRIKDAYDEDIDAPDLNNVGGDIPYDTDLEVPGSADFIADAWEQKCSY 733
            SY+S KILGRLYRRIKDAYDEDIDAP LN V GDIPYD DLEVPGSADFIADAWEQKCSY
Sbjct: 985  SYRSKKILGRLYRRIKDAYDEDIDAPYLNFVTGDIPYDKDLEVPGSADFIADAWEQKCSY 1044

Query: 732  DGQLSALLGQYKVKREEEVVTGQIWSMPKYNSKKQGELKERLKHSYSALRKEFRQTFEKL 553
            DGQLS LLGQYKVKREEEVVTGQIWSMPKYNS+KQGELKERLKHSYSAL+KEFR TFEKL
Sbjct: 1045 DGQLSGLLGQYKVKREEEVVTGQIWSMPKYNSRKQGELKERLKHSYSALKKEFRHTFEKL 1104

Query: 552  NSDVGELSDEEKNLLYEQKASAWYQVTYNPKWVKKSRDLQIKSPENQEPDSLGNMVMLSF 373
            NSDVGELS+EEKNL YEQKASAWYQVTY+P+WVKKS DLQ KS ENQE DSLG+ VMLSF
Sbjct: 1105 NSDVGELSEEEKNLFYEQKASAWYQVTYHPEWVKKSLDLQDKSSENQEADSLGSTVMLSF 1164

Query: 372  PWIAVDYIARTKI--RHQGSGKIVSTKPVDSLAKYLSERL 259
            PWIAVDY+ARTKI  RHQ  G   STKPVDSLAKYLSERL
Sbjct: 1165 PWIAVDYLARTKIRQRHQRCGNFDSTKPVDSLAKYLSERL 1204


>ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Glycine max]
          Length = 1204

 Score = 2081 bits (5393), Expect = 0.0
 Identities = 1024/1180 (86%), Positives = 1084/1180 (91%), Gaps = 4/1180 (0%)
 Frame = -1

Query: 3786 SNDLVTFLEDKFGLVDSCRLKTSWTPPESYPEFSIIDTAQIKKTDDYKKVEPHAFVHFAS 3607
            ++DL+ +LEDK GLV  CRLKTSWTPPESYPEF IIDTA+I++T+DYKKVEPHAFVHFAS
Sbjct: 26   ASDLLNYLEDKIGLVYRCRLKTSWTPPESYPEFKIIDTAKIRRTEDYKKVEPHAFVHFAS 85

Query: 3606 AESATDAFNASGCCDLFWKSQALKIIRGPQNPNLLNQRRRDTAPFKMSDVLVEIGTLVSP 3427
             ES T A NASGCCDLF K+Q LK+  GP+NP  LNQRRR T PFKMSDVLVEIGTLVSP
Sbjct: 86   PESVTAALNASGCCDLFLKNQPLKVSCGPKNPYFLNQRRRTTTPFKMSDVLVEIGTLVSP 145

Query: 3426 EEFYVAWRGPDKGVNFLVDPFDRMCKLCFNRDVAFSFKGIEKKAVIKCDFKVGFLVRDIY 3247
             EF+V+WRGPDKGV FLVDPFD MC+ CF+RD AFSFKGI+KKAVIKCDF+VGFLVRDI 
Sbjct: 146  GEFFVSWRGPDKGVKFLVDPFDGMCRFCFSRDTAFSFKGIDKKAVIKCDFQVGFLVRDIN 205

Query: 3246 EIRRYNDTSYHVVLLQLASSPLVWYRTADDDIEEPVTYDLLDDDDPWIRTTDFTPSGAIG 3067
            EIRRYNDTSY VVLL LASSP VWYRTADDDIEE V +DLLDDDDPWIRTTDFTPSGAIG
Sbjct: 206  EIRRYNDTSYLVVLLHLASSPWVWYRTADDDIEESVPFDLLDDDDPWIRTTDFTPSGAIG 265

Query: 3066 RCNFYRISIPPRYGAKLTKAMGYLGGQRVQ--EVPLKRPLRIRDEPGFGVSMSDAFFHIH 2893
            RCNFYRISIPPR+GAKL KAM YL GQRVQ  E+PLK+ LR ++EP FG+ MSDAFF++H
Sbjct: 266  RCNFYRISIPPRHGAKLMKAMLYLKGQRVQIQELPLKQTLRTQNEPDFGMPMSDAFFYVH 325

Query: 2892 FQKGITFDIMFLINAIVHKGIFNQHSLSDRFFELLRNQPKEVNVAALKHLCSYKRPVFDA 2713
            FQK I FDIMFL+NAIVHKGIFNQH LSDRFFELLRNQPKE+NVAALKHLCSYKRPVFDA
Sbjct: 326  FQKDIAFDIMFLVNAIVHKGIFNQHRLSDRFFELLRNQPKELNVAALKHLCSYKRPVFDA 385

Query: 2712 AKRLKTVQEWLLRNPKLYQSSKQLDDIVEVRRLVITPTKAYCVPPEVELSNRVLRRFREV 2533
             KRLK VQEWLLRNPKLYQ SKQLDDIVEVRRLV+TP+KAYC+PPEVELSNRVLR+FREV
Sbjct: 386  TKRLKIVQEWLLRNPKLYQISKQLDDIVEVRRLVVTPSKAYCIPPEVELSNRVLRKFREV 445

Query: 2532 SDHFLRVTFMDEGMQTINVNALNYYVAPIVREITSNSFPQKTKIYKRVKTILDEGFYFCG 2353
            SD FLRVTFMDEGMQTINVNALNYYVAPIV+EITSNSF QKTKIYKRVKTIL+EGFYFCG
Sbjct: 446  SDCFLRVTFMDEGMQTINVNALNYYVAPIVKEITSNSFSQKTKIYKRVKTILEEGFYFCG 505

Query: 2352 RKYSFLAFSSNQLRDRSAWFFAEGSDISCDAIRNWMGKFNHKNVAKCAARMGQCFSSTYA 2173
            RKYSFLAFSSNQLRDRSAWFFAE   I CD IRNWMGKFN +NVAKCAARMGQCFSSTYA
Sbjct: 506  RKYSFLAFSSNQLRDRSAWFFAEDK-IRCDDIRNWMGKFNQRNVAKCAARMGQCFSSTYA 564

Query: 2172 TVEVAANEVNRMLPDVTRNNYVFSDGIGIITPDLAVEVAEKLKLDNVPSAYQIRFAGFKG 1993
            TVEVAANEVN MLPDV RNNY+FSDGIG+IT DLA EVAEKLKLDNVPSAYQIR+AGFKG
Sbjct: 565  TVEVAANEVNSMLPDVERNNYIFSDGIGVITHDLAREVAEKLKLDNVPSAYQIRYAGFKG 624

Query: 1992 VVASWPAKGDGFRLQLRPSMNKFQSTHSTLEICSWTRFQPGFLNRQIITLLSALDVSDEI 1813
            VVASWPAKGDG RL LRPSMNKFQSTH+ LEIC+WTRFQPGFLNRQIITLLSAL V DEI
Sbjct: 625  VVASWPAKGDGVRLSLRPSMNKFQSTHNILEICAWTRFQPGFLNRQIITLLSALGVPDEI 684

Query: 1812 FWKMQEVMISRLNQMLIDVDVAFDVLTKSCAEHGNAAAIMLSCGFSPQTEPHLRGMLTSI 1633
            FW+MQE M+ +LNQML+D D+AFDVLTKSCAEHGNAAAIMLSCGFSP TEPHLRGMLTS 
Sbjct: 685  FWQMQEAMLLKLNQMLVDADIAFDVLTKSCAEHGNAAAIMLSCGFSPLTEPHLRGMLTST 744

Query: 1632 RAAQLWGLREKSRIFVSSGRWLMGVLDESGVLEQGQCFVQVSTPSLENCFSKHGSRFSET 1453
            RAAQLWGLREKSRIFVSSGRWLMGVLDE GVLEQGQCFVQVSTPSLENCFSKHGSRFSET
Sbjct: 745  RAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSLENCFSKHGSRFSET 804

Query: 1452 KNLQVVKGYVVIAKNPCLHPGDVRVLEAVDAPDLHHLYDCLVFPQKGDRPHTNEASGSDL 1273
            KNL VVKG+VVIAKNPCLHPGDVRVLEAVDAPDLHHL DCLVFPQKGDRPHTNEASGSDL
Sbjct: 805  KNLHVVKGFVVIAKNPCLHPGDVRVLEAVDAPDLHHLNDCLVFPQKGDRPHTNEASGSDL 864

Query: 1272 DGDLYFVTWEENLIPPSKRSWIPMEYTAQESKLQTRQVTIRDIIEFFAKNMVNEHLGAIC 1093
            DGDLYFVTW+ENLIPPSKRSWIPMEY  QESKL TRQV  RDIIEFF +NMVNEHLGAIC
Sbjct: 865  DGDLYFVTWDENLIPPSKRSWIPMEYAPQESKLLTRQVMTRDIIEFFVRNMVNEHLGAIC 924

Query: 1092 NAHVVHADSSDYGAMDEKCITLAELAATAVDFPKTGKLVTMPSHLKPKLYPDFMGKEQHQ 913
            NAHVVHADSSDYGA+DEKCI LAELAATAVDFPKTGKLVTMP HLKPKLYPDFMGKE+HQ
Sbjct: 925  NAHVVHADSSDYGALDEKCIHLAELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKERHQ 984

Query: 912  SYKSTKILGRLYRRIKDAYDEDIDAPDLNNVGGDIPYDTDLEVPGSADFIADAWEQKCSY 733
            SY+S KILGRLYR IKDAYDEDI+AP LN V GDIPYD DLEVPGSADFIADAWEQKCSY
Sbjct: 985  SYRSNKILGRLYRHIKDAYDEDIEAPYLNFVTGDIPYDKDLEVPGSADFIADAWEQKCSY 1044

Query: 732  DGQLSALLGQYKVKREEEVVTGQIWSMPKYNSKKQGELKERLKHSYSALRKEFRQTFEKL 553
            DGQLS L+GQYKVKREEEVVTGQIWSMPKYNS+KQGELKERLKHSYSAL+KEFR TFEKL
Sbjct: 1045 DGQLSGLIGQYKVKREEEVVTGQIWSMPKYNSRKQGELKERLKHSYSALKKEFRYTFEKL 1104

Query: 552  NSDVGELSDEEKNLLYEQKASAWYQVTYNPKWVKKSRDLQIKSPENQEPDSLGNMVMLSF 373
            NSDVGELS+EEKNLLYEQKASAWYQVTY+P+WVKKS DLQ KS ENQE DSLG+ VMLSF
Sbjct: 1105 NSDVGELSEEEKNLLYEQKASAWYQVTYHPEWVKKSLDLQDKSSENQEADSLGSTVMLSF 1164

Query: 372  PWIAVDYIARTKI--RHQGSGKIVSTKPVDSLAKYLSERL 259
            PWIAVDY+ARTKI  RHQ SG   STKPVD LAKYLSERL
Sbjct: 1165 PWIAVDYLARTKIRQRHQRSGNFDSTKPVDYLAKYLSERL 1204


>ref|XP_003603409.1| Rna-dependent RNA polymerase [Medicago truncatula]
            gi|355492457|gb|AES73660.1| Rna-dependent RNA polymerase
            [Medicago truncatula]
          Length = 1188

 Score = 2011 bits (5211), Expect = 0.0
 Identities = 979/1176 (83%), Positives = 1067/1176 (90%)
 Frame = -1

Query: 3786 SNDLVTFLEDKFGLVDSCRLKTSWTPPESYPEFSIIDTAQIKKTDDYKKVEPHAFVHFAS 3607
            ++DLV++LE K G VD CRLKTS TPPESYPEF++ DT QI+ TDDYKKV PHAFVHF  
Sbjct: 13   TSDLVSYLESKIGYVDRCRLKTSCTPPESYPEFTMTDTKQIEITDDYKKVAPHAFVHFTL 72

Query: 3606 AESATDAFNASGCCDLFWKSQALKIIRGPQNPNLLNQRRRDTAPFKMSDVLVEIGTLVSP 3427
             +SAT+A NA+G CDL    + LK+I GPQNPN LNQRRR  APFKMSDV+VEIGTLVSP
Sbjct: 73   PDSATEALNAAGRCDLILNGKVLKVISGPQNPNFLNQRRRTEAPFKMSDVIVEIGTLVSP 132

Query: 3426 EEFYVAWRGPDKGVNFLVDPFDRMCKLCFNRDVAFSFKGIEKKAVIKCDFKVGFLVRDIY 3247
             +F VAWRG DKGVNFLVDPFD++CK+CFNRD AFSFKGI K+AVIKCDFKVGFL+RDI 
Sbjct: 133  ADFTVAWRGCDKGVNFLVDPFDKICKICFNRDTAFSFKGIGKQAVIKCDFKVGFLIRDIE 192

Query: 3246 EIRRYNDTSYHVVLLQLASSPLVWYRTADDDIEEPVTYDLLDDDDPWIRTTDFTPSGAIG 3067
            EI+RY+DTS+ VVLL+LASSPLVWYRTADDDI+E VT DLLDDDDPWIRTTDFTPSGAIG
Sbjct: 193  EIQRYDDTSHLVVLLRLASSPLVWYRTADDDIDESVTIDLLDDDDPWIRTTDFTPSGAIG 252

Query: 3066 RCNFYRISIPPRYGAKLTKAMGYLGGQRVQEVPLKRPLRIRDEPGFGVSMSDAFFHIHFQ 2887
            RCN+YRISIPPR+GAKL KA+ YL  QRV  +PLKRP +I++EP FGV MSDAFF+I  Q
Sbjct: 253  RCNYYRISIPPRHGAKLNKALEYLRRQRVPRIPLKRPPKIQNEPDFGVPMSDAFFYIDSQ 312

Query: 2886 KGITFDIMFLINAIVHKGIFNQHSLSDRFFELLRNQPKEVNVAALKHLCSYKRPVFDAAK 2707
            K I+FDIMFLINAIVH+GIFNQ+SLS++FFELL+NQPK+VNVAALKH+C+YK PVFDAAK
Sbjct: 313  KDISFDIMFLINAIVHRGIFNQYSLSNKFFELLKNQPKDVNVAALKHICTYKHPVFDAAK 372

Query: 2706 RLKTVQEWLLRNPKLYQSSKQLDDIVEVRRLVITPTKAYCVPPEVELSNRVLRRFREVSD 2527
            RL+ VQ+WLLRNPK YQ SKQ DD++EVRRLV+TPTKAYC+ PEVELSNRVLRRFREVSD
Sbjct: 373  RLEAVQKWLLRNPKFYQISKQSDDVMEVRRLVVTPTKAYCISPEVELSNRVLRRFREVSD 432

Query: 2526 HFLRVTFMDEGMQTINVNALNYYVAPIVREITSNSFPQKTKIYKRVKTILDEGFYFCGRK 2347
             FLRVTFMDEG QT+N  ALNYYVAPIV+EITSNSF QKT+IYKRVKTILD+GFYFCGRK
Sbjct: 433  RFLRVTFMDEGQQTLNNYALNYYVAPIVKEITSNSFQQKTRIYKRVKTILDDGFYFCGRK 492

Query: 2346 YSFLAFSSNQLRDRSAWFFAEGSDISCDAIRNWMGKFNHKNVAKCAARMGQCFSSTYATV 2167
            YSFLAFSSNQLRDRSAWFFAE  DI+CD IRNWMG+FN KNVAKCAARMGQCFSSTYA+V
Sbjct: 493  YSFLAFSSNQLRDRSAWFFAEDKDITCDDIRNWMGRFNQKNVAKCAARMGQCFSSTYASV 552

Query: 2166 EVAANEVNRMLPDVTRNNYVFSDGIGIITPDLAVEVAEKLKLDNVPSAYQIRFAGFKGVV 1987
            EV ANEVN MLPDV RNNYVFSDGIGIIT DLAVEVAEKLKLD  PSAYQIR+AGFKGVV
Sbjct: 553  EVPANEVNSMLPDVERNNYVFSDGIGIITTDLAVEVAEKLKLDKAPSAYQIRYAGFKGVV 612

Query: 1986 ASWPAKGDGFRLQLRPSMNKFQSTHSTLEICSWTRFQPGFLNRQIITLLSALDVSDEIFW 1807
            A WPAKGDG +L LRPSMNKFQSTH+TLEIC+WTRFQPGFLNRQIITLLSALDV DEIFW
Sbjct: 613  ACWPAKGDGIKLSLRPSMNKFQSTHTTLEICAWTRFQPGFLNRQIITLLSALDVPDEIFW 672

Query: 1806 KMQEVMISRLNQMLIDVDVAFDVLTKSCAEHGNAAAIMLSCGFSPQTEPHLRGMLTSIRA 1627
            KMQE MIS LNQML+D DVA+DVLTKSCAEHGNAAAIMLSCGFSP+TEPHLRGML SIRA
Sbjct: 673  KMQEGMISSLNQMLVDRDVAYDVLTKSCAEHGNAAAIMLSCGFSPKTEPHLRGMLNSIRA 732

Query: 1626 AQLWGLREKSRIFVSSGRWLMGVLDESGVLEQGQCFVQVSTPSLENCFSKHGSRFSETKN 1447
            AQLWGLREKSRIFVSSGRWLMGVLDE GVLEQGQCFVQVSTPSLENCFSKHGSRFSETK 
Sbjct: 733  AQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSLENCFSKHGSRFSETKT 792

Query: 1446 LQVVKGYVVIAKNPCLHPGDVRVLEAVDAPDLHHLYDCLVFPQKGDRPHTNEASGSDLDG 1267
            + VVKG VVIAKNPCLHPGDVRVLEAVD PDLHHLYDC+VFPQKG+RPHT+EASGSDLDG
Sbjct: 793  VHVVKGIVVIAKNPCLHPGDVRVLEAVDVPDLHHLYDCVVFPQKGERPHTDEASGSDLDG 852

Query: 1266 DLYFVTWEENLIPPSKRSWIPMEYTAQESKLQTRQVTIRDIIEFFAKNMVNEHLGAICNA 1087
            DLYFVTW+ NLIPPSKRSW PMEY AQES+LQTRQVT++DII+FF +NMVNE LG+ICNA
Sbjct: 853  DLYFVTWDGNLIPPSKRSWPPMEYAAQESRLQTRQVTVQDIIDFFVRNMVNEQLGSICNA 912

Query: 1086 HVVHADSSDYGAMDEKCITLAELAATAVDFPKTGKLVTMPSHLKPKLYPDFMGKEQHQSY 907
            HVVHADSSDYGA+DE C+ LAELAATAVDFPKTGKLVTMPS+LKPKLYPDFMGKE HQSY
Sbjct: 913  HVVHADSSDYGALDENCVHLAELAATAVDFPKTGKLVTMPSNLKPKLYPDFMGKEHHQSY 972

Query: 906  KSTKILGRLYRRIKDAYDEDIDAPDLNNVGGDIPYDTDLEVPGSADFIADAWEQKCSYDG 727
            KS KILGRLYRRIKDAYD+DIDAP+ N V  DI YDTDLEVPGS++FIADAWEQ+CSYDG
Sbjct: 973  KSKKILGRLYRRIKDAYDKDIDAPEFNCVSSDILYDTDLEVPGSSEFIADAWEQRCSYDG 1032

Query: 726  QLSALLGQYKVKREEEVVTGQIWSMPKYNSKKQGELKERLKHSYSALRKEFRQTFEKLNS 547
            QLS LLGQYKVK EEEVVTGQIWSMPKYNS+KQGELKERLKHSYSAL+KEFRQ FEKL S
Sbjct: 1033 QLSGLLGQYKVKTEEEVVTGQIWSMPKYNSRKQGELKERLKHSYSALKKEFRQIFEKLKS 1092

Query: 546  DVGELSDEEKNLLYEQKASAWYQVTYNPKWVKKSRDLQIKSPENQEPDSLGNMVMLSFPW 367
            DVGELSD+EKNLLYEQKASAWYQVTY+PKWVKKS DLQ+KS +NQ  DSLGNMVMLSFPW
Sbjct: 1093 DVGELSDKEKNLLYEQKASAWYQVTYHPKWVKKSLDLQLKSSDNQSADSLGNMVMLSFPW 1152

Query: 366  IAVDYIARTKIRHQGSGKIVSTKPVDSLAKYLSERL 259
            IAVDY+A TK RH+      STK VDSLAKYLSERL
Sbjct: 1153 IAVDYLACTKTRHRRVKDFDSTKQVDSLAKYLSERL 1188


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score = 1765 bits (4571), Expect = 0.0
 Identities = 860/1185 (72%), Positives = 993/1185 (83%), Gaps = 9/1185 (0%)
 Frame = -1

Query: 3786 SNDLVTFLEDKFGLVDSCRLKTSWTPPESYPEFSIIDTAQIKKTDDYKKVEPHAFVHFAS 3607
            + DLV +L+++ G V  CRLKTSWTPPESYP F I DTA I++ D Y++VEPHAFVHFAS
Sbjct: 26   ARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEITDTAVIQRVDAYRRVEPHAFVHFAS 85

Query: 3606 AESATDAFNASGCCDLFWKSQALKIIRGPQNPNLLNQRRRDTAPFKMSDVLVEIGTLVSP 3427
             +SAT A NA+G C+LF+  + +K+  GP+NP  LNQRRR T PFK+SDV VEIGTLVS 
Sbjct: 86   PDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHLNQRRRTTIPFKLSDVHVEIGTLVSR 145

Query: 3426 EEFYVAWRGPDKGVNFLVDPFDRMCKLCFNRDVAFSFKGIEKKAVIKCDFKVGFLVRDIY 3247
            +EF V WRGP  GV+FLVDPFD  CK CF RD AFSFKG  + AVI+CDFK+ FLVRDI 
Sbjct: 146  DEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAFSFKGTTEHAVIRCDFKLEFLVRDIN 205

Query: 3246 EIRRYNDTSYHVVLLQLASSPLVWYRTADDDIEEPVTYDLLDDDDPWIRTTDFTPSGAIG 3067
            EI++Y DTS  V+LLQLAS+P VWYRTADDDIE  V +DLLDDDDPWIRTTDFTPSGAIG
Sbjct: 206  EIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVLVPFDLLDDDDPWIRTTDFTPSGAIG 265

Query: 3066 RCNFYRISIPPRYGAKLTKAMGYLGGQRVQEVPLKRPLRIRDEPGFGVSMSDAFFHIHFQ 2887
            RCN YR+SIPPR+GAKL +A+ +L  +RVQE  L+RPL +  EP + + MSD FF IH +
Sbjct: 266  RCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLRRPLHVTAEPEYEMPMSDPFFCIHHE 325

Query: 2886 KGITFDIMFLINAIVHKGIFNQHSLSDRFFELLRNQPKEVNVAALKHLCSYKRPVFDAAK 2707
            +G+ F++MFL+NA++HKGIFNQH LSD FF+LLRNQP +VN+AAL+H+CSYK PVFDA K
Sbjct: 326  EGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRNQPLDVNIAALRHICSYKHPVFDAHK 385

Query: 2706 RLKTVQEWLLRNPKLYQSSKQLDDIVEVRRLVITPTKAYCVPPEVELSNRVLRRFREVSD 2527
            RLK VQ+WLL+NPKL++SSKQLDDIVE+RRL ITPT+AYC+PPEVELSNRVLRR+++++D
Sbjct: 386  RLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAITPTRAYCLPPEVELSNRVLRRYKDIAD 445

Query: 2526 HFLRVTFMDEGMQTINVNALNYYVAPIVREITSNSFPQKTKIYKRVKTILDEGFYFCGRK 2347
             FLRVTFMDEG+QT+N N L YY APIVR+ITSNSF QKT+I+KRVK+IL +GFY CGRK
Sbjct: 446  QFLRVTFMDEGLQTMNANTLTYYCAPIVRDITSNSFSQKTRIFKRVKSILTDGFYLCGRK 505

Query: 2346 YSFLAFSSNQLRDRSAWFFAEGSDISCDAIRNWMGKFNHKNVAKCAARMGQCFSSTYATV 2167
            YSFLAFSSNQLRDRSAWFFAE    S   IRNWMGKF ++N+AKCAARMGQCFSSTYATV
Sbjct: 506  YSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRNWMGKFTNRNIAKCAARMGQCFSSTYATV 565

Query: 2166 EVAANEVNRMLPDVTRNNYVFSDGIGIITPDLAVEVAEKLKLD-NVPSAYQIRFAGFKGV 1990
            EV + E    LPD+ RNNY+FSDGIG+ITPDLA EVAEKLKL+ N P AYQIR+AG KGV
Sbjct: 566  EVPSAEAILDLPDIERNNYIFSDGIGMITPDLAKEVAEKLKLEVNPPCAYQIRYAGCKGV 625

Query: 1989 VASWPAKGDGFRLQLRPSMNKFQSTHSTLEICSWTRFQPGFLNRQIITLLSALDVSDEIF 1810
            VA WPA  DG RL LR SMNKF S H+TLEICSWTRFQPGFLNRQIITLLS LDV DEIF
Sbjct: 626  VACWPAHIDGIRLSLRVSMNKFHSNHTTLEICSWTRFQPGFLNRQIITLLSTLDVPDEIF 685

Query: 1809 WKMQEVMISRLNQMLIDVDVAFDVLTKSCAEHGNAAAIMLSCGFSPQTEPHLRGMLTSIR 1630
            WKMQ VM+S+LNQM +D DVAFDV+T SCAE GN AAIMLS GF+P+TEPHL GMLT IR
Sbjct: 686  WKMQIVMVSKLNQMFMDADVAFDVVTASCAEQGNTAAIMLSAGFNPKTEPHLCGMLTCIR 745

Query: 1629 AAQLWGLREKSRIFVSSGRWLMGVLDESGVLEQGQCFVQVSTPSLENCFSKHGSRFSET- 1453
            AAQLWGLREK+RIFV SGRWLMG LDE GVLE GQCF+QVS PSLE+CF KHGSRFSE+ 
Sbjct: 746  AAQLWGLREKTRIFVPSGRWLMGCLDELGVLEHGQCFIQVSNPSLESCFWKHGSRFSESK 805

Query: 1452 KNLQVVKGYVVIAKNPCLHPGDVRVLEAVDAPDLHHLYDCLVFPQKGDRPHTNEASGSDL 1273
            K LQVVKG VV+AKNPCLHPGD+R+LEAVDAP+LHHL+DCLVFPQKGDRPHTNEASGSDL
Sbjct: 806  KKLQVVKGTVVVAKNPCLHPGDIRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDL 865

Query: 1272 DGDLYFVTWEENLIPPSKRSWIPMEYTAQESKLQTRQVTIRDIIEFFAKNMVNEHLGAIC 1093
            DGDLYFVTW+ENLIPPSKRSW+PM+Y A E+K   R V  +DII+FFAKNMVNE+LGAIC
Sbjct: 866  DGDLYFVTWDENLIPPSKRSWLPMQYDAAEAKQLNRPVNHQDIIDFFAKNMVNENLGAIC 925

Query: 1092 NAHVVHADSSDYGAMDEKCITLAELAATAVDFPKTGKLVTMPSHLKPKLYPDFMGKEQHQ 913
            NAHVVHAD S+YGA+DE CI LAELAATAVDFPKTGKLVTMP HLKPKLYPDFMGKE +Q
Sbjct: 926  NAHVVHADLSEYGALDENCIKLAELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEDYQ 985

Query: 912  SYKSTKILGRLYRRIKDAYDEDIDAPD-------LNNVGGDIPYDTDLEVPGSADFIADA 754
            SY S KILGRLYR++KD Y++D D  D       LN V GDIPYD DLEV GS+D+I DA
Sbjct: 986  SYNSNKILGRLYRQVKDDYNDDDDDDDDAATSSELNLVRGDIPYDKDLEVSGSSDYILDA 1045

Query: 753  WEQKCSYDGQLSALLGQYKVKREEEVVTGQIWSMPKYNSKKQGELKERLKHSYSALRKEF 574
            W+QKCSYDGQL  LL QYKVKREEEVVTG IWSMPK NS+KQGELKERLK SY +L+KEF
Sbjct: 1046 WDQKCSYDGQLKGLLAQYKVKREEEVVTGHIWSMPKCNSRKQGELKERLKQSYHSLKKEF 1105

Query: 573  RQTFEKLNSDVGELSDEEKNLLYEQKASAWYQVTYNPKWVKKSRDLQIKSPENQEPDSLG 394
            RQ FEK++SD  +L+++EKNLLYEQKASAWYQV Y+PKWV KS +L       QEPD+ G
Sbjct: 1106 RQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQVAYHPKWVNKSMEL-------QEPDAAG 1158

Query: 393  NMVMLSFPWIAVDYIARTKIRHQGSGKIVSTKPVDSLAKYLSERL 259
               MLSF WIA DY+AR KIR +G   + ++KPV+SL KYL++R+
Sbjct: 1159 CASMLSFAWIAADYLARIKIRCRGFDGVDTSKPVNSLVKYLADRI 1203


>ref|XP_002308662.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1198

 Score = 1758 bits (4552), Expect = 0.0
 Identities = 851/1180 (72%), Positives = 995/1180 (84%), Gaps = 4/1180 (0%)
 Frame = -1

Query: 3786 SNDLVTFLEDKFGLVDSCRLKTSWTPPESYPEFSIIDTAQIKKTDDYKKVEPHAFVHFAS 3607
            + DL+ +LE + GLV  CRLKTSWTPPESYP F I D  +I +T+DY++VEPHAFVHFA 
Sbjct: 26   AKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEITDITKITRTEDYRRVEPHAFVHFAL 85

Query: 3606 AESATDAFNASGCCDLFWKSQALKIIRGPQNPNLLNQRRRDTAPFKMSDVLVEIGTLVSP 3427
             +SAT A +A+  C+LF  ++ LK   GP+NP  LNQRRR T PFK+S V VEIGTLVS 
Sbjct: 86   PQSATCAIDAADRCELFLNNKGLKASLGPENPFTLNQRRRKTTPFKLSGVGVEIGTLVSR 145

Query: 3426 EEFYVAWRGPDKGVNFLVDPFDRMCKLCFNRDVAFSFKGIEKKAVIKCDFKVGFLVRDIY 3247
            +EF+V WRGP  GV+FLVDPFD  C+ CF+R+ AFSFK   + AVIKCDFKV FLVRDI 
Sbjct: 146  DEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAFSFKSTAEHAVIKCDFKVEFLVRDIN 205

Query: 3246 EIRRYNDTSYHVVLLQLASSPLVWYRTADDDIEEPVTYDLLDDDDPWIRTTDFTPSGAIG 3067
            EI++Y +TS  V+LLQLAS+P VWYRTADDDIE  V +DLLDDDDPWIRTTDFT SGAIG
Sbjct: 206  EIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVSVPFDLLDDDDPWIRTTDFTASGAIG 265

Query: 3066 RCNFYRISIPPRYGAKLTKAMGYLGGQRVQEVPLKRPLRIRDEPGFGVSMSDAFFHIHFQ 2887
            RC+ YR+SIPPR+G KL KA+ +L  +RVQE  L+RP+RIRDEP FG+ M+D FF IH +
Sbjct: 266  RCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLRRPIRIRDEPDFGMPMTDPFFCIHHK 325

Query: 2886 KGITFDIMFLINAIVHKGIFNQHSLSDRFFELLRNQPKEVNVAALKHLCSYKRPVFDAAK 2707
            +GI FD++FL+NA++HKGIFNQH LS+ FF+LLRNQP EVNVAALKH+  Y+RPVFDA K
Sbjct: 326  EGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQPTEVNVAALKHIYPYRRPVFDAYK 385

Query: 2706 RLKTVQEWLLRNPKLYQSSKQLDDIVEVRRLVITPTKAYCVPPEVELSNRVLRRFREVSD 2527
            +LK  QEWLL+NPK +++ K+LDDI E+RRLVITPTKAYC+PPEVELSNRVLR++++V+D
Sbjct: 386  KLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITPTKAYCLPPEVELSNRVLRKYKDVAD 445

Query: 2526 HFLRVTFMDEGMQTINVNALNYYVAPIVREITSNSFPQKTKIYKRVKTILDEGFYFCGRK 2347
             FLRVTFMDEG+QT+N NALNY+ APIVR ITS SFPQKT+I+KRV++IL EGFY CGR+
Sbjct: 446  RFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYSFPQKTRIFKRVRSILTEGFYLCGRR 505

Query: 2346 YSFLAFSSNQLRDRSAWFFAEGSDISCDAIRNWMGKFNHKNVAKCAARMGQCFSSTYATV 2167
            YSFLAFSSNQLRDRSAWFFAE  +I+  AI++WMGKF +KN+AKCAARMGQCFSSTYAT+
Sbjct: 506  YSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMGKFTNKNIAKCAARMGQCFSSTYATI 565

Query: 2166 EVAANEVNRMLPDVTRNNYVFSDGIGIITPDLAVEVAEKLKLD-NVPSAYQIRFAGFKGV 1990
            EV   EVN  LPD+ RN Y FSDGIG+ITPDLA EVAEKLK D + P AYQIR+AG KGV
Sbjct: 566  EVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLAREVAEKLKFDFDPPCAYQIRYAGCKGV 625

Query: 1989 VASWPAKGDGFRLQLRPSMNKFQSTHSTLEICSWTRFQPGFLNRQIITLLSALDVSDEIF 1810
            VA WP +GDG RL LR SMNKFQS H+ LEICSWTRFQPGFLNRQIITLLSAL+V D +F
Sbjct: 626  VACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWTRFQPGFLNRQIITLLSALNVPDAVF 685

Query: 1809 WKMQEVMISRLNQMLIDVDVAFDVLTKSCAEHGNAAAIMLSCGFSPQTEPHLRGMLTSIR 1630
            WKMQE+M+S+LNQML+D DVAFDVLT SCAE GN AAIMLS GF PQ EPHLRGMLT +R
Sbjct: 686  WKMQELMVSKLNQMLVDSDVAFDVLTASCAEQGNVAAIMLSAGFKPQKEPHLRGMLTCVR 745

Query: 1629 AAQLWGLREKSRIFVSSGRWLMGVLDESGVLEQGQCFVQVSTPSLENCFSKHGSRFSET- 1453
            AAQLWGLREK+RIFV SGRWLMG LDE GVLEQGQCF+QVS   LENCF KHGS+FSET 
Sbjct: 746  AAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSNSYLENCFVKHGSKFSETK 805

Query: 1452 KNLQVVKGYVVIAKNPCLHPGDVRVLEAVDAPDLHHLYDCLVFPQKGDRPHTNEASGSDL 1273
            KNLQVVKG VVIAKNPCLHPGD+R+LEAVDAP LHHLYDCLVFPQKG+RPH NEASGSDL
Sbjct: 806  KNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVFPQKGERPHANEASGSDL 865

Query: 1272 DGDLYFVTWEENLIPPSKRSWIPMEYTAQESKLQTRQVTIRDIIEFFAKNMVNEHLGAIC 1093
            DGDLYFVTW+ENLIPPSKRSWIPM+Y A E+K  TR V  +DI+EFFAKNM NE+LGAIC
Sbjct: 866  DGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQLTRPVNHQDIVEFFAKNMANENLGAIC 925

Query: 1092 NAHVVHADSSDYGAMDEKCITLAELAATAVDFPKTGKLVTMPSHLKPKLYPDFMGKEQHQ 913
            NAHVV AD S+YGA+DEKC+TLAELAATAVDFPKTGK+V+MPS LKPK+YPDFMGKE+HQ
Sbjct: 926  NAHVVRADLSEYGALDEKCLTLAELAATAVDFPKTGKIVSMPSDLKPKIYPDFMGKEEHQ 985

Query: 912  SYKSTKILGRLYRRIKDAYDED--IDAPDLNNVGGDIPYDTDLEVPGSADFIADAWEQKC 739
            SYKS KILGRLYR+IKDAYD+D    + +LN V GDIPYD DLEV G+ DFI+DAW++KC
Sbjct: 986  SYKSKKILGRLYRQIKDAYDDDDVAASSELNFVRGDIPYDLDLEVLGATDFISDAWDRKC 1045

Query: 738  SYDGQLSALLGQYKVKREEEVVTGQIWSMPKYNSKKQGELKERLKHSYSALRKEFRQTFE 559
            SYDGQL+ LL QYKVKREEEVVTG +WSMPK +S+KQG+LKERLKHSY+ L++EFRQ FE
Sbjct: 1046 SYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGSSRKQGDLKERLKHSYNCLKREFRQVFE 1105

Query: 558  KLNSDVGELSDEEKNLLYEQKASAWYQVTYNPKWVKKSRDLQIKSPENQEPDSLGNMVML 379
            K++ D G+L D+EKN+LYE+KASAWYQVTY+P W++KS +L       Q+ D  G  VML
Sbjct: 1106 KMDLDFGQLDDDEKNMLYERKASAWYQVTYHPHWIQKSLEL-------QDSDGAGISVML 1158

Query: 378  SFPWIAVDYIARTKIRHQGSGKIVSTKPVDSLAKYLSERL 259
            SF WIA DY+AR KIRH   G + S KPV+SLAKYL++R+
Sbjct: 1159 SFAWIAADYLARIKIRHSRIGNVDSAKPVNSLAKYLADRM 1198