BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00006376
         (913 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003599439.1| RNA polymerase sigma factor [Medicago trunca...   431   e-119
ref|XP_003599441.1| RNA polymerase sigma factor [Medicago trunca...   407   e-111
emb|CBI24961.3| unnamed protein product [Vitis vinifera]              350   3e-94
ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-...   350   3e-94
ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana] gi|752165...   311   2e-82

>ref|XP_003599439.1| RNA polymerase sigma factor [Medicago truncatula]
           gi|355488487|gb|AES69690.1| RNA polymerase sigma factor
           [Medicago truncatula]
          Length = 403

 Score =  431 bits (1109), Expect = e-119
 Identities = 222/285 (77%), Positives = 250/285 (87%)
 Frame = +3

Query: 3   LCLGLKEGARIEVSKLRITELEGNPTISRKFAHGNTSLNKVLCTTKESRERLIREYRGLV 182
           LCL LKEGA+IEV+K R+TE EGN  ISR F   NTS++KVL  T++S+ERL R+YRGLV
Sbjct: 120 LCLCLKEGAKIEVAKQRMTEQEGNSAISR-FTLENTSVDKVLINTRKSKERLARDYRGLV 178

Query: 183 TSIAAGYKGKGLSLHELIQEGTIGLLQGVEKFDPNRGCKLSTYIYWWIKQAIIKAVAMKC 362
            SIAA Y+GKGLS+ +LIQEGTIGLL G EKFDPNRGCKLSTY+YWWIKQ IIKA+A K 
Sbjct: 179 ASIAAHYQGKGLSIQDLIQEGTIGLLHGAEKFDPNRGCKLSTYVYWWIKQGIIKALAKKS 238

Query: 363 RLVRLPGNKCQMVAKVAKTNNVMRRRLRRKPTYNETAEVLNVNVSTVKLVSERSRPPISL 542
           RL+RLPG K  MVAK+A+ NNV+RRRLRRKPTYNE AEVLNVNVSTVKLVSERSR PISL
Sbjct: 239 RLIRLPGEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISL 298

Query: 543 DKAVTDRGHLTLQEIIPGPVEMIPEKMVERQLMKQGVVKLLNMLTKREAEIVMLRFGLNG 722
           D+++TD+ +L L+EIIPGPVEMIPEKMVERQLMKQGVVKLLN L KRE EIV L FGLNG
Sbjct: 299 DRSITDQSNLILKEIIPGPVEMIPEKMVERQLMKQGVVKLLNTLDKREEEIVRLYFGLNG 358

Query: 723 ETPRSFEEIGRLLKLSRERVRQIHGIALSKLQQTSLVDSLKFYVV 857
           ETP SFEEIG+LLKLSRER+RQIHGIALSKL+Q +LVDSLKFYVV
Sbjct: 359 ETPLSFEEIGKLLKLSRERIRQIHGIALSKLEQNTLVDSLKFYVV 403


>ref|XP_003599441.1| RNA polymerase sigma factor [Medicago truncatula]
           gi|355488489|gb|AES69692.1| RNA polymerase sigma factor
           [Medicago truncatula]
          Length = 267

 Score =  407 bits (1047), Expect = e-111
 Identities = 209/268 (77%), Positives = 235/268 (87%)
 Frame = +3

Query: 54  ITELEGNPTISRKFAHGNTSLNKVLCTTKESRERLIREYRGLVTSIAAGYKGKGLSLHEL 233
           +TE EGN  ISR F   NTS++KVL  T++S+ERL R+YRGLV SIAA Y+GKGLS+ +L
Sbjct: 1   MTEQEGNSAISR-FTLENTSVDKVLINTRKSKERLARDYRGLVASIAAHYQGKGLSIQDL 59

Query: 234 IQEGTIGLLQGVEKFDPNRGCKLSTYIYWWIKQAIIKAVAMKCRLVRLPGNKCQMVAKVA 413
           IQEGTIGLL G EKFDPNRGCKLSTY+YWWIKQ IIKA+A K RL+RLPG K  MVAK+A
Sbjct: 60  IQEGTIGLLHGAEKFDPNRGCKLSTYVYWWIKQGIIKALAKKSRLIRLPGEKYGMVAKIA 119

Query: 414 KTNNVMRRRLRRKPTYNETAEVLNVNVSTVKLVSERSRPPISLDKAVTDRGHLTLQEIIP 593
           + NNV+RRRLRRKPTYNE AEVLNVNVSTVKLVSERSR PISLD+++TD+ +L L+EIIP
Sbjct: 120 EANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRSITDQSNLILKEIIP 179

Query: 594 GPVEMIPEKMVERQLMKQGVVKLLNMLTKREAEIVMLRFGLNGETPRSFEEIGRLLKLSR 773
           GPVEMIPEKMVERQLMKQGVVKLLN L KRE EIV L FGLNGETP SFEEIG+LLKLSR
Sbjct: 180 GPVEMIPEKMVERQLMKQGVVKLLNTLDKREEEIVRLYFGLNGETPLSFEEIGKLLKLSR 239

Query: 774 ERVRQIHGIALSKLQQTSLVDSLKFYVV 857
           ER+RQIHGIALSKL+Q +LVDSLKFYVV
Sbjct: 240 ERIRQIHGIALSKLEQNTLVDSLKFYVV 267


>emb|CBI24961.3| unnamed protein product [Vitis vinifera]
          Length = 319

 Score =  350 bits (898), Expect = 3e-94
 Identities = 180/288 (62%), Positives = 230/288 (79%), Gaps = 4/288 (1%)
 Frame = +3

Query: 6   CLGLKEGARIEVSKLRITELEGNPTISRKFAHG----NTSLNKVLCTTKESRERLIREYR 173
           CL LKE A +E ++ RI E   +   S ++A       +SL+K+LC  +ESRER+ + YR
Sbjct: 32  CLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKMLCNGRESRERINQSYR 91

Query: 174 GLVTSIAAGYKGKGLSLHELIQEGTIGLLQGVEKFDPNRGCKLSTYIYWWIKQAIIKAVA 353
            LV SIAA Y+GKGLSL +LIQEG+IGLL+G E+FDP+RG KLSTY+YWWI+QAI++A+A
Sbjct: 92  RLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIRQAIVRAIA 151

Query: 354 MKCRLVRLPGNKCQMVAKVAKTNNVMRRRLRRKPTYNETAEVLNVNVSTVKLVSERSRPP 533
            K R++RLPG+ C+MVAK+A+   V+ RRLRR PTY+E AE ++VNVSTV+LVSERSR P
Sbjct: 152 NKSRIIRLPGSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVSERSRTP 211

Query: 534 ISLDKAVTDRGHLTLQEIIPGPVEMIPEKMVERQLMKQGVVKLLNMLTKREAEIVMLRFG 713
           IS+D+AVT +G +TLQEIIPGP E  P+KMV+RQLMKQ V + LN L +REA I+ L FG
Sbjct: 212 ISVDQAVTSQGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALNTLCEREAYILRLYFG 271

Query: 714 LNGETPRSFEEIGRLLKLSRERVRQIHGIALSKLQQTSLVDSLKFYVV 857
           +NGETP SFEEIGRL+KLSRERVRQI+ IALSKL+QTS+VD LK Y++
Sbjct: 272 INGETPLSFEEIGRLMKLSRERVRQINSIALSKLRQTSVVDYLKLYMM 319


>ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
          Length = 426

 Score =  350 bits (898), Expect = 3e-94
 Identities = 180/288 (62%), Positives = 230/288 (79%), Gaps = 4/288 (1%)
 Frame = +3

Query: 6    CLGLKEGARIEVSKLRITELEGNPTISRKFAHG----NTSLNKVLCTTKESRERLIREYR 173
            CL LKE A +E ++ RI E   +   S ++A       +SL+K+LC  +ESRER+ + YR
Sbjct: 139  CLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKMLCNGRESRERINQSYR 198

Query: 174  GLVTSIAAGYKGKGLSLHELIQEGTIGLLQGVEKFDPNRGCKLSTYIYWWIKQAIIKAVA 353
             LV SIAA Y+GKGLSL +LIQEG+IGLL+G E+FDP+RG KLSTY+YWWI+QAI++A+A
Sbjct: 199  RLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIRQAIVRAIA 258

Query: 354  MKCRLVRLPGNKCQMVAKVAKTNNVMRRRLRRKPTYNETAEVLNVNVSTVKLVSERSRPP 533
             K R++RLPG+ C+MVAK+A+   V+ RRLRR PTY+E AE ++VNVSTV+LVSERSR P
Sbjct: 259  NKSRIIRLPGSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVSERSRTP 318

Query: 534  ISLDKAVTDRGHLTLQEIIPGPVEMIPEKMVERQLMKQGVVKLLNMLTKREAEIVMLRFG 713
            IS+D+AVT +G +TLQEIIPGP E  P+KMV+RQLMKQ V + LN L +REA I+ L FG
Sbjct: 319  ISVDQAVTSQGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALNTLCEREAYILRLYFG 378

Query: 714  LNGETPRSFEEIGRLLKLSRERVRQIHGIALSKLQQTSLVDSLKFYVV 857
            +NGETP SFEEIGRL+KLSRERVRQI+ IALSKL+QTS+VD LK Y++
Sbjct: 379  INGETPLSFEEIGRLMKLSRERVRQINSIALSKLRQTSVVDYLKLYMM 426


>ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana]
           gi|75216509|sp|Q9ZSL6.1|SIGD_ARATH RecName: Full=RNA
           polymerase sigma factor sigD, chloroplastic; Short=Sigma
           factor D; Short=Sigma-D; AltName: Full=RNA polymerase
           sigma factor sig4; Short=Atsig4; Short=Sigma factor 4;
           Flags: Precursor gi|3983260|gb|AAC97954.1| sigma-like
           factor [Arabidopsis thaliana] gi|4972296|dbj|BAA78110.1|
           RNA polymerase sigma subunit SigD [Arabidopsis thaliana]
           gi|9758039|dbj|BAB08700.1| sigma-like factor
           [Arabidopsis thaliana] gi|332004550|gb|AED91933.1| sigma
           factor 4 [Arabidopsis thaliana]
          Length = 419

 Score =  311 bits (796), Expect = 2e-82
 Identities = 163/287 (56%), Positives = 212/287 (73%), Gaps = 4/287 (1%)
 Frame = +3

Query: 3   LCLGLKEGARIEVSKLRITELEGNPTISRKFAHGN----TSLNKVLCTTKESRERLIREY 170
           LCL LKEGA++E      T +E N  +S   A G      S N++LC  KE+RE++ R Y
Sbjct: 131 LCLYLKEGAKLENLG---TSVEENEMVSVLLASGRGKKKRSANEILCRRKEAREKITRCY 187

Query: 171 RGLVTSIAAGYKGKGLSLHELIQEGTIGLLQGVEKFDPNRGCKLSTYIYWWIKQAIIKAV 350
           R LV SIA GY+GKGL+L +LIQEG+IGLL+G E+FDP+RG KLSTY+YWWIKQAI++A+
Sbjct: 188 RRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIKQAILRAI 247

Query: 351 AMKCRLVRLPGNKCQMVAKVAKTNNVMRRRLRRKPTYNETAEVLNVNVSTVKLVSERSRP 530
           A K RLV+LPG+  ++ AKVA+ +NV+ R+LRR+P+  E AE LN+NVS V+L  ERSR 
Sbjct: 248 AHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAVRLAVERSRS 307

Query: 531 PISLDKAVTDRGHLTLQEIIPGPVEMIPEKMVERQLMKQGVVKLLNMLTKREAEIVMLRF 710
           P+SLD+  +  G +TLQEI+ GP E  PE+MV+R+ MK  + +LL  LT RE+ ++ L F
Sbjct: 308 PVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARESRVLGLYF 367

Query: 711 GLNGETPRSFEEIGRLLKLSRERVRQIHGIALSKLQQTSLVDSLKFY 851
           GLNGETP SFEEIG+ LKLSRERVRQI+GIAL KL+    V+ LK Y
Sbjct: 368 GLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 414