BLASTX nr result

ID: Glycyrrhiza24_contig00006338 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00006338
         (876 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003528041.1| PREDICTED: zinc finger CCCH domain-containin...   326   5e-87
ref|XP_003602587.1| Zinc finger CCCH domain-containing protein [...   323   4e-86
ref|XP_003630250.1| Zinc finger CCCH domain-containing protein [...   247   3e-63
ref|XP_003523233.1| PREDICTED: uncharacterized protein LOC100783...   201   2e-49
ref|XP_002527649.1| hypothetical protein RCOM_1278130 [Ricinus c...   186   8e-45

>ref|XP_003528041.1| PREDICTED: zinc finger CCCH domain-containing protein 38-like
           [Glycine max]
          Length = 828

 Score =  326 bits (835), Expect = 5e-87
 Identities = 176/286 (61%), Positives = 195/286 (68%), Gaps = 11/286 (3%)
 Frame = +1

Query: 49  MSGSGRKRSSKWDLRDDPEFAPGS-KQLRSGWSSEDVAGSNSSKWSYLEGNDKFKPGMGF 225
           MSGSG+KRSSKWDLRD+P+F+P   KQLRSGWSS                 DK K    F
Sbjct: 1   MSGSGKKRSSKWDLRDNPDFSPDDGKQLRSGWSS---------------AGDKLKH---F 42

Query: 226 SSKDGGRGMNKDDIMNKDQRVLDATMEWDTDGSHNKKMSPWLEEWKQKEF-SQSPKNDWS 402
           S   GGRG NKD+IMNKD RVLD+TMEWD D S++ KMSP L+ WK K   SQSPKN WS
Sbjct: 43  S---GGRGSNKDNIMNKDYRVLDSTMEWDEDESYDHKMSPGLDAWKHKRHNSQSPKNGWS 99

Query: 403 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFRWDSGVNDRNRMKVGGSMQPCRDFAA 582
                                           GFRWDSGVNDR+RM+ GGS QPCRDFAA
Sbjct: 100 RSVSRSSRSRSPPH------------------GFRWDSGVNDRSRMRAGGSTQPCRDFAA 141

Query: 583 GKCRRGSLCNFLHHDSQNHENSWESKHREDGAPRYS---------LKSGRSNEACINFAK 735
           GKCRRGS C+FLH D+QNHE+ WE K+REDGAPRYS         LKSGRS+EACINF K
Sbjct: 142 GKCRRGSHCHFLH-DNQNHEDGWEDKYREDGAPRYSAPREGRDYSLKSGRSDEACINFPK 200

Query: 736 GRCRMGASCKFVHHNNSDGYGKVSMDELTREKEIDRRHRDSYFEQG 873
           GRCRMGASCKFVHHNNSDG+ KVS+D LTRE+EIDRRHRDS FEQG
Sbjct: 201 GRCRMGASCKFVHHNNSDGHSKVSVDGLTREREIDRRHRDSSFEQG 246


>ref|XP_003602587.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
           gi|355491635|gb|AES72838.1| Zinc finger CCCH
           domain-containing protein [Medicago truncatula]
          Length = 1084

 Score =  323 bits (827), Expect = 4e-86
 Identities = 165/277 (59%), Positives = 189/277 (68%), Gaps = 15/277 (5%)
 Frame = +1

Query: 49  MSGSGRKRSSKWDLRDDPEFAPGSKQLRSGWSSEDVAGSNSSKWSYLEGNDKFKPGMGFS 228
           MSG+GRK SSKWDL D+ +F+PGSKQ+RSG SS DVAGSNSS+W+YLEGNDK +P  GFS
Sbjct: 1   MSGTGRKHSSKWDLSDEHKFSPGSKQMRSGRSSADVAGSNSSEWAYLEGNDKLRPVTGFS 60

Query: 229 SKD---GGRGMNKDDIMNKDQRVLDATMEWDTDGSHNKKMSPWLEEWKQKEFSQSPKNDW 399
           SK+   GGRG N+DD M+KD RV ++  EWDTDGS+++ M            SQSPKNDW
Sbjct: 61  SKESYYGGRGSNEDDAMHKDHRVFNSRREWDTDGSYSRNM----------RHSQSPKNDW 110

Query: 400 SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---GFRWDSGVNDRNRMKVGGSMQPCR 570
           S                                   GFRWDSGV+ R R +VGGS +PCR
Sbjct: 111 SRTCTLLEELCTAIGYFMKDYVIVTNSRSRSRSPPRGFRWDSGVDGRKRTRVGGSTRPCR 170

Query: 571 DFAAGKCRRGSLCNFLHHDSQNHENSWESKHREDGAPRY---------SLKSGRSNEACI 723
           DFA GKCRRGS CNFLHHD+QN ENSWE + REDGAPRY         SLK GRSNEACI
Sbjct: 171 DFAVGKCRRGSHCNFLHHDNQNRENSWEGRPREDGAPRYSATHESVDHSLKRGRSNEACI 230

Query: 724 NFAKGRCRMGASCKFVHHNNSDGYGKVSMDELTREKE 834
           NFAKG CRMGASCKFVH  +SDGYGKVSMDE TRE++
Sbjct: 231 NFAKGSCRMGASCKFVHDYDSDGYGKVSMDEFTRERD 267



 Score = 68.9 bits (167), Expect = 1e-09
 Identities = 47/127 (37%), Positives = 65/127 (51%), Gaps = 14/127 (11%)
 Frame = +1

Query: 538 MKVGGSMQPCRDFAAGKCRRGSLCNFLHHDSQNHENSWESKHREDGAPRY---------S 690
           +K G S +  R+   G  R  +      H  ++  ++  +  REDGAPRY         S
Sbjct: 314 LKSGRSNEFTRERENGGPRYPATYESRDHSPKSGRSNEFTSEREDGAPRYPTTHESRDYS 373

Query: 691 LKSGRSNEACINFAKGRCRMGASCKFVHHN-----NSDGYGKVSMDELTREKEIDRRHRD 855
           LKSGRSNE       G  R   + +   ++     ++D YGKV MDE TRE+E+ RRHRD
Sbjct: 374 LKSGRSNEFTSEREDGAPRYPTTHESRDYSLKSGRSNDEYGKVFMDEFTREREVGRRHRD 433

Query: 856 SYFEQGG 876
           + FE GG
Sbjct: 434 NSFEHGG 440


>ref|XP_003630250.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
           gi|355524272|gb|AET04726.1| Zinc finger CCCH
           domain-containing protein [Medicago truncatula]
          Length = 779

 Score =  247 bits (630), Expect = 3e-63
 Identities = 146/286 (51%), Positives = 170/286 (59%), Gaps = 11/286 (3%)
 Frame = +1

Query: 49  MSGSGRKRSSKWDLRDDPEFAPGSKQLRSGWSSEDVAGSNSSKWSYLEGNDKFKPGMGFS 228
           MSG  RK SS  D RD+PEF P           E V  SNSS+  YLE ND  KP M FS
Sbjct: 1   MSGGSRKLSSNRDSRDEPEFPP-----------ESVTKSNSSR--YLERNDTLKPRMRFS 47

Query: 229 SKD---GGRGMNKDDIMNKDQRVLDATMEWDTDGSHNKKMSPWLEEWKQKEFSQSPKNDW 399
            K+   G RG NKDD   +D +VLDAT   DTDGS+N KMSP  EEWK +E SQ  KND+
Sbjct: 48  RKEPFSGVRGSNKDD---EDYQVLDATFAKDTDGSYNMKMSPGFEEWKNREHSQYAKNDY 104

Query: 400 SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFRWDSGVNDRNRMKVGGSMQPCRDFA 579
                                            GF   S V+DRNR + G S QPCRDFA
Sbjct: 105 GRSRRSRSRSPPH--------------------GFS-HSSVDDRNRTRDGRSAQPCRDFA 143

Query: 580 AGKCRRGSLCNFLHHDSQNHENSWESKHREDGA----PR----YSLKSGRSNEACINFAK 735
            G CRRGS C+FLHHD Q++E+S ES+HR DG     PR    YSL + RSNEACI FAK
Sbjct: 144 VGNCRRGSHCHFLHHDKQSYEDSRESRHRPDGRRYSNPRENGDYSLTNRRSNEACIYFAK 203

Query: 736 GRCRMGASCKFVHHNNSDGYGKVSMDELTREKEIDRRHRDSYFEQG 873
           GRCRMG SCK+VHH+NSDG+ K+  DE + E+EIDRRH +  F+QG
Sbjct: 204 GRCRMGESCKYVHHDNSDGFDKILADESSSEREIDRRHIEQSFKQG 249


>ref|XP_003523233.1| PREDICTED: uncharacterized protein LOC100783856 [Glycine max]
          Length = 697

 Score =  201 bits (510), Expect = 2e-49
 Identities = 96/122 (78%), Positives = 104/122 (85%), Gaps = 9/122 (7%)
 Frame = +1

Query: 538 MKVGGSMQPCRDFAAGKCRRGSLCNFLHHDSQNHENSWESKHREDGAPRYS--------- 690
           M+ GGS QPCRDFAAGKCRRGS C+FLH D+QNHE+SWE K+REDGAPRYS         
Sbjct: 1   MRAGGSTQPCRDFAAGKCRRGSHCHFLH-DNQNHEDSWEDKYREDGAPRYSAPHEGRDYS 59

Query: 691 LKSGRSNEACINFAKGRCRMGASCKFVHHNNSDGYGKVSMDELTREKEIDRRHRDSYFEQ 870
           LKSGRSNEACINF KGRCRMGASCKFVHHNNSDG+ KVS+DEL RE+EIDRRHRDS FEQ
Sbjct: 60  LKSGRSNEACINFPKGRCRMGASCKFVHHNNSDGHSKVSVDELAREREIDRRHRDSSFEQ 119

Query: 871 GG 876
           GG
Sbjct: 120 GG 121


>ref|XP_002527649.1| hypothetical protein RCOM_1278130 [Ricinus communis]
           gi|223532954|gb|EEF34720.1| hypothetical protein
           RCOM_1278130 [Ricinus communis]
          Length = 886

 Score =  186 bits (471), Expect = 8e-45
 Identities = 107/302 (35%), Positives = 152/302 (50%), Gaps = 26/302 (8%)
 Frame = +1

Query: 49  MSGSGRKRSSKWDLRDDPEFAPGS----------------KQLRSGWSSEDVAGSNSSKW 180
           MSGSGR+RSSKWDL+++      S                K+ + GW S + AG N  KW
Sbjct: 1   MSGSGRRRSSKWDLKEESRILFDSTHEKGWSGKAGLSFHDKESQRGWLSPETAGGNRPKW 60

Query: 181 SYLEGNDKFKPGMGFSSKDGGRGMNKDDIMNKDQ-RVLDATMEWDTDGSHNKKMSPWLEE 357
           S LE               G RG  +DD +++D  R L A   W+ + ++  +MSP L+E
Sbjct: 61  SVLE------------PLSGRRGSRRDDSIDEDHNRSLKAMTAWEGEENYGTRMSPGLDE 108

Query: 358 WKQKEFSQSPKNDWSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFRWDSGVNDRNR 537
           W+ +    SP+N+W                                 GF  + G+ DR+R
Sbjct: 109 WRHQSRRNSPRNEWKRSRRSRSRSQSRSRSRSPDR------------GFGREPGLYDRSR 156

Query: 538 MKVGGSMQPCRDFAAGKCRRGSLCNFLHHDSQNHENSWESKHREDGAPRYSLK------- 696
            +   S Q C+DFAAG+CRRG+ C FLH  +Q +E+ WE +HR+    +Y +        
Sbjct: 157 SRSAVSSQICKDFAAGRCRRGNHCQFLHQGTQTYEDDWE-RHRKTATSQYPIPHDSREYP 215

Query: 697 --SGRSNEACINFAKGRCRMGASCKFVHHNNSDGYGKVSMDELTREKEIDRRHRDSYFEQ 870
             SGRS ++C +F KG CR GASC+F HH  +   GK S +E+TRE+  DRRHRD+  E+
Sbjct: 216 TGSGRSTDSCSDFLKGNCRRGASCRFAHHGATHAAGKGSSNEVTRERNSDRRHRDASPER 275

Query: 871 GG 876
            G
Sbjct: 276 HG 277


Top