BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00006192
         (1343 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II su...   573   e-161
ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerase II su...   569   e-160
ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta...   565   e-158
ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-...   562   e-158
gb|AFK41039.1| unknown [Medicago truncatula]                          558   e-156

>ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
            [Glycine max]
          Length = 319

 Score =  573 bits (1478), Expect = e-161
 Identities = 289/316 (91%), Positives = 303/316 (95%)
 Frame = +1

Query: 160  GVSYARMPRVKIRELKDNYAKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSSVL 339
            GVSYARMPRVKIRELKD+YAKFELRDTDASIANALRRVMIAEVPT+AIDLVEIEVNSSVL
Sbjct: 4    GVSYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVL 63

Query: 340  NDEFIAHRLGLIPLVSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTS 519
            NDEFIAHRLGLIPL SERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTS
Sbjct: 64   NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTS 123

Query: 520  KDLYSSDHTVVPVENTDPSVLDSSENRGVIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 699
            KDLYSSD TV PV+ +DPS  DS  NRG+IIVKLRRGQEL+LRAIARKGIGKDHAKWSPA
Sbjct: 124  KDLYSSDPTVSPVDFSDPSATDSDNNRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPA 183

Query: 700  ATVTFMYEPDIHINEDLMESLTLKEKQEWVESSPTPVFEIDPVTQQVSVVEPEAYAYDDE 879
            ATVTFMYEP+IHINEDLME+LTL+EK+EWV+SSPT VFEIDPVTQQV VV+ EAY YDDE
Sbjct: 184  ATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDAEAYTYDDE 243

Query: 880  VIKKAEAMGKPGLVEITAKQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSEDTV 1059
            V+KKAEAMGKPGLVEI A+QDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSEDTV
Sbjct: 244  VLKKAEAMGKPGLVEIIARQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSEDTV 303

Query: 1060 EADDQFGELGAHMRGG 1107
            EADDQFGELGAHMRGG
Sbjct: 304  EADDQFGELGAHMRGG 319


>ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
            [Glycine max]
          Length = 320

 Score =  569 bits (1467), Expect = e-160
 Identities = 289/317 (91%), Positives = 304/317 (95%), Gaps = 1/317 (0%)
 Frame = +1

Query: 160  GVSYARMPRVKIRELKDNYAKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSSVL 339
            GVSYARMPRVKIRELKD+YAKFELRDTDASIANALRRVMIAEVPT+AIDLVEIEVNSSVL
Sbjct: 4    GVSYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVL 63

Query: 340  NDEFIAHRLGLIPLVSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTS 519
            NDEFIAHRLGLIPL SERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTS
Sbjct: 64   NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTS 123

Query: 520  KDLYSSDHTVVPVENTDPSVLDSSEN-RGVIIVKLRRGQELRLRAIARKGIGKDHAKWSP 696
            KDLYSSD TV PV+ +DPS  DS +N RG+IIVKLRRGQEL+LRAIARKGIGKDHAKWSP
Sbjct: 124  KDLYSSDPTVSPVDFSDPSATDSPDNNRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSP 183

Query: 697  AATVTFMYEPDIHINEDLMESLTLKEKQEWVESSPTPVFEIDPVTQQVSVVEPEAYAYDD 876
            AATVTFMYEP+IHINEDLME+LTL+EK+EWV+SSPT VFEIDPVTQQV VV+ EAY YDD
Sbjct: 184  AATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDAEAYTYDD 243

Query: 877  EVIKKAEAMGKPGLVEITAKQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSEDT 1056
            EV+KKAEAMGKPGLVEI A+QDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSEDT
Sbjct: 244  EVLKKAEAMGKPGLVEIIARQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSEDT 303

Query: 1057 VEADDQFGELGAHMRGG 1107
            VEADDQFGELGAHMRGG
Sbjct: 304  VEADDQFGELGAHMRGG 320


>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 318

 Score =  565 bits (1455), Expect = e-158
 Identities = 282/318 (88%), Positives = 300/318 (94%)
 Frame = +1

Query: 154  MEGVSYARMPRVKIRELKDNYAKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS 333
            MEG SY R PR+KIRELKD+Y KFELRDTDAS+ANALRRVMIAEVPT+AIDLVEIEVNSS
Sbjct: 1    MEGASYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 334  VLNDEFIAHRLGLIPLVSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDV 513
            VLNDEFIAHRLGLIPL SERAMSMRFSRDCDACDGDGQC++CSVEFHLR KC+TDQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDV 120

Query: 514  TSKDLYSSDHTVVPVENTDPSVLDSSENRGVIIVKLRRGQELRLRAIARKGIGKDHAKWS 693
            TSKDLYSSDHTVVPV+ +D S  DSSE RG+IIVKLRRGQELRLRAIARKGIGKDHAKWS
Sbjct: 121  TSKDLYSSDHTVVPVDFSDSSGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 180

Query: 694  PAATVTFMYEPDIHINEDLMESLTLKEKQEWVESSPTPVFEIDPVTQQVSVVEPEAYAYD 873
            PAATVTFMYEPDIHINEDLMESL+L+EKQ WVESSPT VF+IDP TQQV VV+PEAY YD
Sbjct: 181  PAATVTFMYEPDIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTQQVVVVDPEAYTYD 240

Query: 874  DEVIKKAEAMGKPGLVEITAKQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSED 1053
            +EVIKKAE+MGKPGLV I AK+DSFIFTVESTGA+KASQLVLNAIEILKQKLDAVRLSED
Sbjct: 241  EEVIKKAESMGKPGLVNIQAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSED 300

Query: 1054 TVEADDQFGELGAHMRGG 1107
            TVEADDQFGELGAHMRGG
Sbjct: 301  TVEADDQFGELGAHMRGG 318


>ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-A [Medicago truncatula]
            gi|85719360|gb|ABC75365.1| RNA polymerase, dimerisation
            [Medicago truncatula] gi|355508950|gb|AES90092.1|
            DNA-directed RNA polymerase II subunit RPB3-A [Medicago
            truncatula]
          Length = 318

 Score =  562 bits (1449), Expect = e-158
 Identities = 281/318 (88%), Positives = 301/318 (94%)
 Frame = +1

Query: 154  MEGVSYARMPRVKIRELKDNYAKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS 333
            MEG SYARMPRVKIRELKD+Y KFELRDTDAS+ANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1    MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 334  VLNDEFIAHRLGLIPLVSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDV 513
            VLNDEFIAHRLGLIPL SERAM+MRFSRDCDACDGDGQCE+CSVEFHLRVKC+TDQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDV 120

Query: 514  TSKDLYSSDHTVVPVENTDPSVLDSSENRGVIIVKLRRGQELRLRAIARKGIGKDHAKWS 693
            +SKDL SSDHTV PV+         S+ RG+IIVKLRRGQELRLRAIARKGIGKDHAKWS
Sbjct: 121  SSKDLISSDHTVTPVDVPGGDASIESDGRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 180

Query: 694  PAATVTFMYEPDIHINEDLMESLTLKEKQEWVESSPTPVFEIDPVTQQVSVVEPEAYAYD 873
            PAATVTFMYEPDIHINEDLMESLTL+EK+EWV+SSPT VF+IDPVTQQV VV+PEAY+YD
Sbjct: 181  PAATVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDIDPVTQQVMVVDPEAYSYD 240

Query: 874  DEVIKKAEAMGKPGLVEITAKQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSED 1053
            DEVIKKAEAMGKPGL+EITAKQDSFIFTVESTGAVKASQL+LN+IEILKQKLDAVRLSED
Sbjct: 241  DEVIKKAEAMGKPGLIEITAKQDSFIFTVESTGAVKASQLLLNSIEILKQKLDAVRLSED 300

Query: 1054 TVEADDQFGELGAHMRGG 1107
            TVEADDQFGELGAHMRGG
Sbjct: 301  TVEADDQFGELGAHMRGG 318


>gb|AFK41039.1| unknown [Medicago truncatula]
          Length = 318

 Score =  558 bits (1437), Expect = e-156
 Identities = 280/318 (88%), Positives = 300/318 (94%)
 Frame = +1

Query: 154  MEGVSYARMPRVKIRELKDNYAKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS 333
            MEG SYARMPRVKIRELKD+Y KFELRDTDAS+ANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1    MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 334  VLNDEFIAHRLGLIPLVSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDV 513
            VLNDEFIAHRLGLIPL SERAM+MRFSRDCDACDGDGQCE+CSVEFHLRVK +TDQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKRITDQTLDV 120

Query: 514  TSKDLYSSDHTVVPVENTDPSVLDSSENRGVIIVKLRRGQELRLRAIARKGIGKDHAKWS 693
            +SKDL SSDHTV PV+         S+ RG+IIVKLRRGQELRLRAIARKGIGKDHAKWS
Sbjct: 121  SSKDLISSDHTVTPVDVPGGDASIESDGRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 180

Query: 694  PAATVTFMYEPDIHINEDLMESLTLKEKQEWVESSPTPVFEIDPVTQQVSVVEPEAYAYD 873
            PAATVTFMYEPDIHINEDLMESLTL+EK+EWV+SSPT VF+IDPVTQQV VV+PEAY+YD
Sbjct: 181  PAATVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDIDPVTQQVMVVDPEAYSYD 240

Query: 874  DEVIKKAEAMGKPGLVEITAKQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSED 1053
            DEVIKKAEAMGKPGL+EITAKQDSFIFTVESTGAVKASQL+LN+IEILKQKLDAVRLSED
Sbjct: 241  DEVIKKAEAMGKPGLIEITAKQDSFIFTVESTGAVKASQLLLNSIEILKQKLDAVRLSED 300

Query: 1054 TVEADDQFGELGAHMRGG 1107
            TVEADDQFGELGAHMRGG
Sbjct: 301  TVEADDQFGELGAHMRGG 318