BLASTX nr result
ID: Glycyrrhiza24_contig00006125
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza24_contig00006125
(2259 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago trun... 743 0.0
ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor rpoD-... 741 0.0
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [... 536 e-150
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ... 521 e-145
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera] 521 e-145
>ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago truncatula]
gi|355477497|gb|AES58700.1| RNA polymerase sigma-B factor
[Medicago truncatula]
Length = 549
Score = 743 bits (1918), Expect = 0.0
Identities = 404/559 (72%), Positives = 453/559 (81%), Gaps = 3/559 (0%)
Frame = -2
Query: 2144 MGLCFGFRLNPRLRCTXXXXXXXXXXXXXXXXXXXXXXXXSAGGREIFSSPTRLSLLSTI 1965
MGLCFGFRLN +LR + AGGRE +P RLSLLST+
Sbjct: 1 MGLCFGFRLNTKLRYSTVPLHHSSPFFSNSHIFLSSSSS--AGGRETLFNPVRLSLLSTV 58
Query: 1964 YEEGEASQKDFGKAFAVSSSALETLENGLLQT-EGTKGNKGKRSLSSVHKMIDNTQLPFG 1788
YEEGE QKDF K FA SS ALE E LLQ E TK NKGKRSLSSVH+MIDN+ LPF
Sbjct: 59 YEEGETLQKDFRKTFAFSS-ALEAPEKDLLQGGELTKVNKGKRSLSSVHEMIDNSHLPFE 117
Query: 1787 ESHFRLLMENLGVLEETFADSEAVRLEKDIMLQLGKLGALELFNVCLRRSFGTSLASDHA 1608
ESHF LLMENLGVLEETFADSEA+RLEK+I+LQL KLGALELFNVCL SFGTS S+
Sbjct: 118 ESHFGLLMENLGVLEETFADSEALRLEKNIILQLEKLGALELFNVCLTTSFGTSCISNCT 177
Query: 1607 DGLLEQVGENKRDCNVDDCIGRVVVKSSKRKENKTRRKRACVAAEASPQSLLPLKANQED 1428
+LEQV ENKR+ VDD G+V+V SSKRKEN+ RRKR V+ S +SL PL NQED
Sbjct: 178 HKVLEQVEENKRNHKVDDYTGKVIVHSSKRKENR-RRKRGSVSIAPSSRSL-PLDDNQED 235
Query: 1427 -LLGFPSSFVKRESNTKNRRLMIAKREAEMSKGVKVLAELEKIRIAIEEDTEQVASLSSW 1251
L P+SFVKR SNTKN+R +IA+RE EMSKGVKVLAELEKIR AIEEDT+QV SLSSW
Sbjct: 236 PLRSSPASFVKRASNTKNKRAVIAQREVEMSKGVKVLAELEKIRTAIEEDTKQVVSLSSW 295
Query: 1250 AEASGVDEKVLQQQLHHGYYCRDELIRSTRSLVLYFARKYRGMGIALEDLLQAGYIGVLR 1071
AE SGVDEKVLQQQL+HGYYCRDELIRSTRSLVLYFARKYRGMGIALEDLLQ GYIGVL+
Sbjct: 296 AETSGVDEKVLQQQLYHGYYCRDELIRSTRSLVLYFARKYRGMGIALEDLLQVGYIGVLQ 355
Query: 1070 GAERFDSTRGYRFSTYVQYWIRKSMSKMVARYARGITIPWSMSRAINQIQKARKTLKNTS 891
GAERFDST+GYRFSTYVQYWIRKSMS+MVA+YARGIT+PWSM++AI+QIQKARK LKNT+
Sbjct: 356 GAERFDSTKGYRFSTYVQYWIRKSMSRMVAKYARGITVPWSMNKAISQIQKARKVLKNTT 415
Query: 890 MKYPDDYEIAKMTGLSLDKIRSASNCLRVVASINQKMGDFSVEYMNYMPDTFIGSPEEAV 711
MKYP+D EIAKMTGLSLDKI SAS+CLR V+S+ + +EYM +MPD I SPEE V
Sbjct: 416 MKYPNDLEIAKMTGLSLDKIMSASHCLRTVSSMYR-----GIEYMGHMPDLSIESPEETV 470
Query: 710 MKQHMRKDIHDLLKGLDSRERQILTLRFGLN-DHQPRSLEYIGRLFKVSKEWIRKIEKKA 534
MKQH++KDIHD+L+ LDSRERQI+ LRFGLN DHQP+SLEYIG++FKVSKEWIRKIEKKA
Sbjct: 471 MKQHIKKDIHDILQSLDSRERQIIILRFGLNDDHQPKSLEYIGKIFKVSKEWIRKIEKKA 530
Query: 533 LTKLRNEATTSKLDFYLDL 477
LTKLRNE SKL++YLDL
Sbjct: 531 LTKLRNETNISKLNYYLDL 549
>ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 551
Score = 741 bits (1914), Expect = 0.0
Identities = 406/570 (71%), Positives = 453/570 (79%), Gaps = 14/570 (2%)
Frame = -2
Query: 2144 MGLCFGFRLNPRLRCTXXXXXXXXXXXXXXXXXXXXXXXXSAGGREIFSSPTRLSLLSTI 1965
MGL FGF LNPRLR SAG RE + TRLS ST
Sbjct: 1 MGLGFGFGLNPRLR-----YCLLLHTPHSFTNSPLCLSPSSAGVRETCFNFTRLSFPSTF 55
Query: 1964 YEEGEASQKDFGKAFAVSSSALETLENGLLQTEGTKGNKGKRSLSSVHKMIDNTQLPFGE 1785
YEEGEA QKDFG+ FA SSSALETLEN L E T+ NKGKRSLSSVHKMIDNTQ+PFGE
Sbjct: 56 YEEGEALQKDFGRVFAFSSSALETLENDSLGREETQVNKGKRSLSSVHKMIDNTQMPFGE 115
Query: 1784 -------------SHFRLLMENLGVLEETFADSEAVRLEKDIMLQLGKLGALELFNVCLR 1644
HFRLLMENL VLEETF DSEA+RLEK I+LQLGKLGALELFNVCL
Sbjct: 116 VSTVSKKFESFRAQHFRLLMENLCVLEETFVDSEALRLEKAIILQLGKLGALELFNVCLS 175
Query: 1643 RSFGTSLASDHADGLLEQVGENKRDCNVDDCIGRVVVKSSKRKENKTRRKRACVAAEASP 1464
RS GTSL S++AD VDD +VVV+SSK+KENKTRRKR V+ S
Sbjct: 176 RSLGTSLVSNYAD-------------KVDDYKDKVVVQSSKKKENKTRRKREFVSTAVSS 222
Query: 1463 QSLLPLKANQEDLLGFPSSFVKRESNTKNRRLMIAKREAEMSKGVKVLAELEKIRIAIEE 1284
QSL LKANQEDLLGF +S VKR NTKN+R+++AKREAEMSKGVKVLAELEKIR AIEE
Sbjct: 223 QSLT-LKANQEDLLGFSASLVKRAPNTKNKRILVAKREAEMSKGVKVLAELEKIRTAIEE 281
Query: 1283 DTEQVASLSSWAEASGVDEKVLQQQLHHGYYCRDELIRSTRSLVLYFARKYRGMGIALED 1104
DT++VASLS+WAEASGVDEKVLQ+ LH GYYC+DELIRSTRSLVLY ARKYRGMGIAL+D
Sbjct: 282 DTKRVASLSTWAEASGVDEKVLQKLLHRGYYCQDELIRSTRSLVLYLARKYRGMGIALDD 341
Query: 1103 LLQAGYIGVLRGAERFDSTRGYRFSTYVQYWIRKSMSKMVARYARGITIPWSMSRAINQI 924
LLQAGY+GVL+GAERFDSTRGY+FSTYVQYWIRKS+ ++VARYARGI IPWS++RAINQI
Sbjct: 342 LLQAGYVGVLQGAERFDSTRGYKFSTYVQYWIRKSILRVVARYARGIVIPWSLNRAINQI 401
Query: 923 QKARKTLKNTSMKYPDDYEIAKMTGLSLDKIRSASNCLRVVASINQKMGDF-SVEYMNYM 747
QKARK +K+T K PDDYEIAKMTGLSLDKI+SASNCLR+VASI+QK+GD+ VEYM +
Sbjct: 402 QKARKAMKSTHKKCPDDYEIAKMTGLSLDKIKSASNCLRIVASIDQKVGDYLGVEYMELL 461
Query: 746 PDTFIGSPEEAVMKQHMRKDIHDLLKGLDSRERQILTLRFGLNDHQPRSLEYIGRLFKVS 567
PD I SPE+AVMKQHMRKD+HDLLKGL+ RER+ILTLRFGLND+QPRSL+ IG LFKVS
Sbjct: 462 PDATIESPEDAVMKQHMRKDVHDLLKGLNLRERKILTLRFGLNDNQPRSLQDIGTLFKVS 521
Query: 566 KEWIRKIEKKALTKLRNEATTSKLDFYLDL 477
KE IRKIEKKALTKL+NEAT SKL +YLDL
Sbjct: 522 KERIRKIEKKALTKLKNEATISKLHYYLDL 551
>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
rpoD, putative [Ricinus communis]
Length = 560
Score = 536 bits (1382), Expect = e-150
Identities = 299/528 (56%), Positives = 387/528 (73%), Gaps = 16/528 (3%)
Frame = -2
Query: 2015 GREIFSSPTRLSLLSTIYEEGEASQKDFGKAFAVSSSALETLENGLLQTEGTKGNKGKRS 1836
GRE S +RLS LS I EEG+ + +D K +A S A++T+EN Q EG K N GKRS
Sbjct: 35 GREATSYQSRLSFLSVISEEGDIAHRDPLKTYAYSY-AVQTVENEHSQGEGFKVNFGKRS 93
Query: 1835 LSSVHKMIDNTQLPFGE-------------SHFRLLMENLGVLEETFADSEAVRLEKDIM 1695
++ +I + ++ E S F LL+ENL +LE++FADS+A +LE+DI+
Sbjct: 94 HFGLN-IIGDAEVSLKEDIFVSPSSTKERTSRFSLLLENLNILEQSFADSDASKLEEDIL 152
Query: 1694 LQLGKLGALELFNVCLRRSFGTSLASDHADGLLEQVGE-NKRDCNVDDCIGRVVVKSSKR 1518
LQLGKLGAL+LFN CL R+ T+ + +D E +GE N ++++ I +VVV ++K+
Sbjct: 153 LQLGKLGALKLFNTCLTRTLETTNVLEVSDVHTEIIGECNINGTSINNQI-KVVVHTAKK 211
Query: 1517 KENKTRRKRACVA-AEASPQSLLPLKANQEDLLGFPSSFVKRESNTKNRRLMIAKREAEM 1341
+E K+RR+RA SP LP + Q S K+ S +K+RRL+IA+ EAEM
Sbjct: 212 EERKSRRERASARKGHKSPSLPLPSRPIQSGSEKPTVSSGKKASKSKSRRLIIARNEAEM 271
Query: 1340 SKGVKVLAELEKIRIAIEEDTEQVASLSSWAEASGVDEKVLQQQLHHGYYCRDELIRSTR 1161
++G+KVLA+LEKIR +EE+TE+V SLS WAEA+G+D KVLQQQL G+YCRDELI+STR
Sbjct: 272 ARGIKVLADLEKIRTTLEEETERVVSLSCWAEAAGLDVKVLQQQLSFGWYCRDELIKSTR 331
Query: 1160 SLVLYFARKYRGMGIALEDLLQAGYIGVLRGAERFDSTRGYRFSTYVQYWIRKSMSKMVA 981
SLVLYFAR YRG GIALEDLLQAG +GVL GAERFD TRGYRFSTYVQYWIRKSMSK+V+
Sbjct: 332 SLVLYFARNYRGTGIALEDLLQAGNLGVLEGAERFDHTRGYRFSTYVQYWIRKSMSKIVS 391
Query: 980 RYARGITIPWSMSRAINQIQKARKTLKNTSMKYPDDYEIAKMTGLSLDKIRSASNCLRVV 801
R ARGI IP ++SRAI QIQKARK L ++ KYPDD EIAK TGLSL KI SAS CLRVV
Sbjct: 392 RLARGIQIPCTLSRAIYQIQKARKALTTSNGKYPDDDEIAKYTGLSLAKIESASRCLRVV 451
Query: 800 ASINQKMGD-FSVEYMNYMPDTFIGSPEEAVMKQHMRKDIHDLLKGLDSRERQILTLRFG 624
SI+QK+G+ + +Y+ ++PDT + SPEE VM+QHM +D+H+LL+ LDSRERQ+L LRFG
Sbjct: 452 GSIDQKIGESLNAKYLEFLPDTSVQSPEEVVMRQHMIQDMHNLLRSLDSRERQVLILRFG 511
Query: 623 LNDHQPRSLEYIGRLFKVSKEWIRKIEKKALTKLRNEATTSKLDFYLD 480
LND+QP+SLE IGR F VSKEW+R++EK+ +T+LRNE T L Y++
Sbjct: 512 LNDYQPKSLEEIGRHFHVSKEWVRRLEKRVMTRLRNEETCRNLRHYIN 559
>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
gi|296081598|emb|CBI20603.3| unnamed protein product
[Vitis vinifera]
Length = 561
Score = 521 bits (1342), Expect = e-145
Identities = 291/529 (55%), Positives = 363/529 (68%), Gaps = 16/529 (3%)
Frame = -2
Query: 2015 GREIFSSPTRLSLLSTIYEEGEASQKDFGKAFAVSSSALETLENGLLQTEGTKGNKGKRS 1836
G+E TR S S E+ E+ KD K FA SS AL+T EN E K GK S
Sbjct: 34 GKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIGKCS 93
Query: 1835 LSSVHKMIDNTQLPFGE--------------SHFRLLMENLGVLEETFADSEAVRLEKDI 1698
+ K+++ +Q P GE S F LL+ENL +LEE FADS VRLE+DI
Sbjct: 94 HGDLFKIVNASQAPIGEDISASVAGLQASKASQFSLLLENLDILEEMFADSNMVRLERDI 153
Query: 1697 MLQLGKLGALELFNVCLRRSFGTSLASDHADGLLEQVGENKRDCNVDDCIGRVVVKSSKR 1518
M+QLG+LGAL+LF +CL R+ TS + D E + E + + VDD + +VVV+S K+
Sbjct: 154 MVQLGRLGALKLFQICLSRTLKTSTSFDLFSAPTEHIRECQTNGTVDDHLDKVVVRSGKK 213
Query: 1517 KENKTRRKRACVAAEASPQSLLPLKANQEDLLGFPS-SFVKRESNTKNRRLMIAKREAEM 1341
+E K++R+RA A+ LP K ++ G PS S VKR N++ +RLM AK EAEM
Sbjct: 214 EERKSKRERALEKADNIYAFPLPSKTIRKGP-GRPSVSTVKRTLNSRRKRLMNAKNEAEM 272
Query: 1340 SKGVKVLAELEKIRIAIEEDTEQVASLSSWAEASGVDEKVLQQQLHHGYYCRDELIRSTR 1161
SKGVK++A LE+IR +EE+ VASLS+WAEA+GVD+KVLQQQL G+YCRDEL+RST
Sbjct: 273 SKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRSTH 332
Query: 1160 SLVLYFARKYRGMGIALEDLLQAGYIGVLRGAERFDSTRGYRFSTYVQYWIRKSMSKMVA 981
SLVLY AR YRGMG+A ED+LQAG +GVL+GAERFD T+GYRFSTYVQYWIRKSMS +VA
Sbjct: 333 SLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVA 392
Query: 980 RYARGITIPWSMSRAINQIQKARKTLKNTSMKYPDDYEIAKMTGLSLDKIRSASNCLRVV 801
R+ARG+ IP++++RAI QIQKARK L + +YPDD EIAK TGLSL KIRSA NCLRVV
Sbjct: 393 RHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVV 452
Query: 800 ASINQKMGD-FSVEYMNYMPDTFIGSPEEAVMKQHMRKDIHDLLKGLDSRERQILTLRFG 624
S +Q D + + + PDT I SPEE M+Q RKDIH+LLKGLD RERQIL LR+G
Sbjct: 453 GSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRYG 512
Query: 623 LNDHQPRSLEYIGRLFKVSKEWIRKIEKKALTKLRNEATTSKLDFYLDL 477
+ Q +SLE IGR F VSKEWIRK+EK AL LR+E L Y+D+
Sbjct: 513 FGEQQRKSLEEIGRRFNVSKEWIRKLEKTALANLRDEEICQNLRHYVDV 561
>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
Length = 611
Score = 521 bits (1342), Expect = e-145
Identities = 291/529 (55%), Positives = 363/529 (68%), Gaps = 16/529 (3%)
Frame = -2
Query: 2015 GREIFSSPTRLSLLSTIYEEGEASQKDFGKAFAVSSSALETLENGLLQTEGTKGNKGKRS 1836
G+E TR S S E+ E+ KD K FA SS AL+T EN E K GK S
Sbjct: 84 GKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIGKCS 143
Query: 1835 LSSVHKMIDNTQLPFGE--------------SHFRLLMENLGVLEETFADSEAVRLEKDI 1698
+ K+++ +Q P GE S F LL+ENL +LEE FADS VRLE+DI
Sbjct: 144 HGDLFKIVNASQAPIGEDISASVAGLQASKASQFSLLLENLDILEEMFADSNMVRLERDI 203
Query: 1697 MLQLGKLGALELFNVCLRRSFGTSLASDHADGLLEQVGENKRDCNVDDCIGRVVVKSSKR 1518
M+QLG+LGAL+LF +CL R+ TS + D E + E + + VDD + +VVV+S K+
Sbjct: 204 MVQLGRLGALKLFQICLSRTLKTSTSFDLFSAPTEHIRECQTNGTVDDHLDKVVVRSGKK 263
Query: 1517 KENKTRRKRACVAAEASPQSLLPLKANQEDLLGFPS-SFVKRESNTKNRRLMIAKREAEM 1341
+E K++R+RA A+ LP K ++ G PS S VKR N++ +RLM AK EAEM
Sbjct: 264 EERKSKRERALEKADNIYAFPLPSKTIRKGP-GRPSVSTVKRTLNSRRKRLMNAKNEAEM 322
Query: 1340 SKGVKVLAELEKIRIAIEEDTEQVASLSSWAEASGVDEKVLQQQLHHGYYCRDELIRSTR 1161
SKGVK++A LE+IR +EE+ VASLS+WAEA+GVD+KVLQQQL G+YCRDEL+RST
Sbjct: 323 SKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRSTH 382
Query: 1160 SLVLYFARKYRGMGIALEDLLQAGYIGVLRGAERFDSTRGYRFSTYVQYWIRKSMSKMVA 981
SLVLY AR YRGMG+A ED+LQAG +GVL+GAERFD T+GYRFSTYVQYWIRKSMS +VA
Sbjct: 383 SLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVA 442
Query: 980 RYARGITIPWSMSRAINQIQKARKTLKNTSMKYPDDYEIAKMTGLSLDKIRSASNCLRVV 801
R+ARG+ IP++++RAI QIQKARK L + +YPDD EIAK TGLSL KIRSA NCLRVV
Sbjct: 443 RHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVV 502
Query: 800 ASINQKMGD-FSVEYMNYMPDTFIGSPEEAVMKQHMRKDIHDLLKGLDSRERQILTLRFG 624
S +Q D + + + PDT I SPEE M+Q RKDIH+LLKGLD RERQIL LR+G
Sbjct: 503 GSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRYG 562
Query: 623 LNDHQPRSLEYIGRLFKVSKEWIRKIEKKALTKLRNEATTSKLDFYLDL 477
+ Q +SLE IGR F VSKEWIRK+EK AL LR+E L Y+D+
Sbjct: 563 FGEQQRKSLEEIGRRFNVSKEWIRKLEKTALANLRDEEICQNLRHYVDV 611