BLASTX nr result

ID: Glycyrrhiza24_contig00006011 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00006011
         (1041 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK40678.1| unknown [Lotus japonicus]                              236   5e-60
ref|NP_001237108.1| uncharacterized protein LOC100305561 [Glycin...   219   9e-55
ref|XP_002318331.1| predicted protein [Populus trichocarpa] gi|2...   182   2e-43
ref|XP_002271224.1| PREDICTED: cold-inducible RNA-binding protei...   167   3e-39
ref|XP_004162944.1| PREDICTED: 40S ribosomal protein S19, mitoch...   150   5e-34

>gb|AFK40678.1| unknown [Lotus japonicus]
          Length = 187

 Score =  236 bits (603), Expect = 5e-60
 Identities = 125/160 (78%), Positives = 135/160 (84%)
 Frame = -3

Query: 904 NTLTQRQRLYLNCSQTNHRTTQFPXXXXXXSIRNKGSCCTVLACLPRHSESSGSSSDARP 725
           N+ TQ Q L+L+CSQTNHR T FP        R +GSC  +LACLP  SESS SS  A+P
Sbjct: 30  NSKTQTQTLHLHCSQTNHRKTPFPSSLSSPH-RIQGSCY-LLACLPPSSESSSSSPSAKP 87

Query: 724 SFSAPSTRLYVSGLSFRTTEESLRNVFKNFGQLVDVNLVMDKIANRPRGFAFLRYATEEE 545
           S SAPSTRLYVSGLSFRTTEESLRN FKNFGQLVDVNLVMDK+ANRPRGFAFLRYATEEE
Sbjct: 88  SSSAPSTRLYVSGLSFRTTEESLRNCFKNFGQLVDVNLVMDKLANRPRGFAFLRYATEEE 147

Query: 544 SQKAIEGMHGKFLDGRVIFVEVAKPRSELRQRLKQNTTKQ 425
           SQKAIEGMHGKFLDGRVIFVEVAKPRSELRQR +QNT ++
Sbjct: 148 SQKAIEGMHGKFLDGRVIFVEVAKPRSELRQRFQQNTMQR 187


>ref|NP_001237108.1| uncharacterized protein LOC100305561 [Glycine max]
           gi|255625921|gb|ACU13305.1| unknown [Glycine max]
          Length = 180

 Score =  219 bits (558), Expect = 9e-55
 Identities = 119/165 (72%), Positives = 134/165 (81%), Gaps = 3/165 (1%)
 Frame = -3

Query: 919 FILSHNTLT---QRQRLYLNCSQTNHRTTQFPXXXXXXSIRNKGSCCTVLACLPRHSESS 749
           F +++N LT   QR  L+LNC QT +RTT FP       +RNK SC +VLACLP   ESS
Sbjct: 19  FPITNNALTFKSQRHTLHLNCFQTKNRTTSFPSSSSI--LRNKASC-SVLACLP--PESS 73

Query: 748 GSSSDARPSFSAPSTRLYVSGLSFRTTEESLRNVFKNFGQLVDVNLVMDKIANRPRGFAF 569
            SSS A+PSF +P T+LYVSGLSFRTTEESLRN FKNFGQLV+V LVMD+IANRPRGFAF
Sbjct: 74  TSSSTAKPSFPSPQTKLYVSGLSFRTTEESLRNAFKNFGQLVEVKLVMDRIANRPRGFAF 133

Query: 568 LRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELRQRLKQNT 434
           LRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSEL  R +++T
Sbjct: 134 LRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELAPRKQEDT 178


>ref|XP_002318331.1| predicted protein [Populus trichocarpa] gi|222859004|gb|EEE96551.1|
           predicted protein [Populus trichocarpa]
          Length = 181

 Score =  182 bits (461), Expect = 2e-43
 Identities = 99/154 (64%), Positives = 113/154 (73%), Gaps = 4/154 (2%)
 Frame = -3

Query: 901 TLTQRQRLYLNCSQTNHRTTQFPXXXXXXSIR----NKGSCCTVLACLPRHSESSGSSSD 734
           T+     L  + ++T  R ++FP        R    N  SCC+VLACLP     S +SS 
Sbjct: 26  TMIMNPSLSWDSAKTKVRRSRFPYFTLNYIERQRLENSCSCCSVLACLP-----SSASSP 80

Query: 733 ARPSFSAPSTRLYVSGLSFRTTEESLRNVFKNFGQLVDVNLVMDKIANRPRGFAFLRYAT 554
           +   F+   T+LYVSGLSFRTTEESLRN F+NFGQLVDVNLVMDK+A RPRGFAFLRY T
Sbjct: 81  SSFGFNFRKTKLYVSGLSFRTTEESLRNAFQNFGQLVDVNLVMDKVAKRPRGFAFLRYET 140

Query: 553 EEESQKAIEGMHGKFLDGRVIFVEVAKPRSELRQ 452
           EEE+QKAIEGMHGKFLDGRVIFVEVAKPRSELRQ
Sbjct: 141 EEEAQKAIEGMHGKFLDGRVIFVEVAKPRSELRQ 174


>ref|XP_002271224.1| PREDICTED: cold-inducible RNA-binding protein [Vitis vinifera]
           gi|296088019|emb|CBI35302.3| unnamed protein product
           [Vitis vinifera]
          Length = 170

 Score =  167 bits (424), Expect = 3e-39
 Identities = 90/120 (75%), Positives = 97/120 (80%)
 Frame = -3

Query: 799 GSCCTVLACLPRHSESSGSSSDARPSFSAPSTRLYVSGLSFRTTEESLRNVFKNFGQLVD 620
           G+    +ACLP        SS  +PS   P TRLYVSGLSFRTTEESLRN F+ FGQLV+
Sbjct: 58  GNDLFAVACLP--------SSPNQPSI--PKTRLYVSGLSFRTTEESLRNAFETFGQLVE 107

Query: 619 VNLVMDKIANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELRQRLKQ 440
           VNLVMDKIANRPRGFAFLRY+TEEES+KAIEGMHGKFLDGRVIFVEVAKPRSELRQ   Q
Sbjct: 108 VNLVMDKIANRPRGFAFLRYSTEEESEKAIEGMHGKFLDGRVIFVEVAKPRSELRQNQNQ 167


>ref|XP_004162944.1| PREDICTED: 40S ribosomal protein S19, mitochondrial-like [Cucumis
           sativus]
          Length = 175

 Score =  150 bits (379), Expect = 5e-34
 Identities = 79/108 (73%), Positives = 90/108 (83%)
 Frame = -3

Query: 754 SSGSSSDARPSFSAPSTRLYVSGLSFRTTEESLRNVFKNFGQLVDVNLVMDKIANRPRGF 575
           SS  SS + P    PSTRLY+SGLSFRTTEESLRN FK+FGQLV+VNLVMD++ANRPRGF
Sbjct: 73  SSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGF 132

Query: 574 AFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELRQRLKQNTT 431
           AFLRYA+EEESQKAIEGMHGK       FVEVAK RSELRQ L++N++
Sbjct: 133 AFLRYASEEESQKAIEGMHGK-----GDFVEVAKSRSELRQGLEENSS 175


Top