BLASTX nr result

ID: Glycyrrhiza24_contig00005304 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00005304
         (269 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002527858.1| chloride channel clc, putative [Ricinus comm...   106   2e-21
gb|ADW93911.1| chloride channel 1 [Hordeum vulgare subsp. vulgare]    105   3e-21
emb|CAA64829.1| C1C-Nt1 [Nicotiana tabacum]                           105   4e-21
emb|CBI29647.3| unnamed protein product [Vitis vinifera]              105   5e-21
ref|XP_002268066.1| PREDICTED: chloride channel protein CLC-c [V...   105   5e-21

>ref|XP_002527858.1| chloride channel clc, putative [Ricinus communis]
           gi|223532782|gb|EEF34561.1| chloride channel clc,
           putative [Ricinus communis]
          Length = 754

 Score =  106 bits (265), Expect = 2e-21
 Identities = 55/89 (61%), Positives = 62/89 (69%)
 Frame = +2

Query: 2   TMRMTVSXXXXXXXXXXXXXXXXXXXXXXXXSKSVADCLNKGVYDQIVEMKGLPYMEAHA 181
           TMRMTVS                        SK+VAD  NKGVYDQIV+MKGLPYMEAHA
Sbjct: 506 TMRMTVSLCIILLELTNDLLMLPLMMLVLLISKTVADSFNKGVYDQIVKMKGLPYMEAHA 565

Query: 182 KSYMRQLVASDVVSGPLITFSGIEKVGNV 268
           + YMRQLVASDVVSGPL++FSG+EKVGN+
Sbjct: 566 EPYMRQLVASDVVSGPLVSFSGVEKVGNI 594


>gb|ADW93911.1| chloride channel 1 [Hordeum vulgare subsp. vulgare]
          Length = 799

 Score =  105 bits (263), Expect = 3e-21
 Identities = 54/89 (60%), Positives = 61/89 (68%)
 Frame = +2

Query: 2   TMRMTVSXXXXXXXXXXXXXXXXXXXXXXXXSKSVADCLNKGVYDQIVEMKGLPYMEAHA 181
           TMRMTVS                        SK++ADC NKGVYDQIV MKGLP+MEAHA
Sbjct: 550 TMRMTVSVCVILLELTNELHMLPLVMLVLLISKTIADCFNKGVYDQIVVMKGLPFMEAHA 609

Query: 182 KSYMRQLVASDVVSGPLITFSGIEKVGNV 268
           + YMR LVASDVVSGPLI+FSG+EKVGN+
Sbjct: 610 EPYMRHLVASDVVSGPLISFSGVEKVGNI 638


>emb|CAA64829.1| C1C-Nt1 [Nicotiana tabacum]
          Length = 780

 Score =  105 bits (262), Expect = 4e-21
 Identities = 54/89 (60%), Positives = 60/89 (67%)
 Frame = +2

Query: 2   TMRMTVSXXXXXXXXXXXXXXXXXXXXXXXXSKSVADCLNKGVYDQIVEMKGLPYMEAHA 181
           TMRMTVS                        SK+VADC N GVYDQIV+MKGLPY+EAHA
Sbjct: 531 TMRMTVSICVILLELTDDLLMLPLVMLVLLISKTVADCFNHGVYDQIVKMKGLPYLEAHA 590

Query: 182 KSYMRQLVASDVVSGPLITFSGIEKVGNV 268
           + YMRQLVA DV SGPLITFSG+EKVGN+
Sbjct: 591 EPYMRQLVAGDVCSGPLITFSGVEKVGNI 619


>emb|CBI29647.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  105 bits (261), Expect = 5e-21
 Identities = 55/89 (61%), Positives = 58/89 (65%)
 Frame = +2

Query: 2   TMRMTVSXXXXXXXXXXXXXXXXXXXXXXXXSKSVADCLNKGVYDQIVEMKGLPYMEAHA 181
           TMRMTVS                        SK+VADC NKGVYDQIV MKG PYMEAHA
Sbjct: 494 TMRMTVSLCIILLELTNDLLMLPLMMLVLLISKTVADCFNKGVYDQIVRMKGFPYMEAHA 553

Query: 182 KSYMRQLVASDVVSGPLITFSGIEKVGNV 268
           + YMR LVA DVVSGPLITFS IEKVGN+
Sbjct: 554 EPYMRHLVAKDVVSGPLITFSSIEKVGNI 582


>ref|XP_002268066.1| PREDICTED: chloride channel protein CLC-c [Vitis vinifera]
           gi|301318128|gb|ADK66979.1| chloride channel ClC1 [Vitis
           vinifera]
          Length = 771

 Score =  105 bits (261), Expect = 5e-21
 Identities = 55/89 (61%), Positives = 58/89 (65%)
 Frame = +2

Query: 2   TMRMTVSXXXXXXXXXXXXXXXXXXXXXXXXSKSVADCLNKGVYDQIVEMKGLPYMEAHA 181
           TMRMTVS                        SK+VADC NKGVYDQIV MKG PYMEAHA
Sbjct: 523 TMRMTVSLCIILLELTNDLLMLPLMMLVLLISKTVADCFNKGVYDQIVRMKGFPYMEAHA 582

Query: 182 KSYMRQLVASDVVSGPLITFSGIEKVGNV 268
           + YMR LVA DVVSGPLITFS IEKVGN+
Sbjct: 583 EPYMRHLVAKDVVSGPLITFSSIEKVGNI 611


Top