BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00005256
         (319 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAW63130.1| 31 kDa putative protein [Strawberry latent ringsp...    83   3e-14
ref|NP_620833.1| 36 kDa protein [Strawberry latent ringspot viru...    50   1e-06

>gb|AAW63130.1| 31 kDa putative protein [Strawberry latent ringspot virus satellite
           RNA]
          Length = 287

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 40/67 (59%), Positives = 49/67 (73%)
 Frame = -1

Query: 319 YGQCSRALALYKQLTSCFGSKMFQATLYKEAVKKVCKLTDAVPVSIPEFMGRLGQVDFGA 140
           +GQCSRAL LYKQL SCFG KMF ++LY  AV+KV +L +  PV+IPE   RLGQVD  A
Sbjct: 221 FGQCSRALTLYKQLCSCFGVKMFSSSLYGMAVRKVLRLREDFPVAIPENFARLGQVDRDA 280

Query: 139 APAHVYV 119
              H++V
Sbjct: 281 RAVHLFV 287


>ref|NP_620833.1| 36 kDa protein [Strawberry latent ringspot virus satellite RNA]
           gi|478364|pir||JQ2018 hypothetical 36.5K protein -
           strawberry latent ringspot virus
           gi|312511|emb|CAA49480.1| 36 kDa protein [Strawberry
           latent ringspot virus satellite RNA]
          Length = 331

 Score = 50.4 bits (119), Expect(2) = 1e-06
 Identities = 22/38 (57%), Positives = 28/38 (73%)
 Frame = -1

Query: 319 YGQCSRALALYKQLTSCFGSKMFQATLYKEAVKKVCKL 206
           +GQCSRAL LY+QL  CFG KMF ++LY  AV++   L
Sbjct: 220 FGQCSRALTLYRQLCGCFGMKMFSSSLYGMAVRRFSAL 257



 Score = 26.6 bits (57), Expect(2) = 1e-06
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 129 TSMYSFCYFSSWVCAFL-GTWALFKESKVV 43
           TS+YS+   S +V     GTWA FK+S ++
Sbjct: 283 TSLYSYTSSSRFVPMIRSGTWAFFKDSLII 312