BLASTX nr result

ID: Glycyrrhiza24_contig00005027 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00005027
         (966 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001236033.1| uncharacterized protein LOC100526922 [Glycin...   241   1e-61
ref|XP_003636869.1| Histone deacetylase complex subunit SAP18 [M...   236   8e-60
ref|XP_003529978.1| PREDICTED: histone deacetylase complex subun...   226   5e-57
ref|XP_002511764.1| Histone deacetylase complex subunit SAP18, p...   216   8e-54
ref|XP_002277566.1| PREDICTED: histone deacetylase complex subun...   215   1e-53

>ref|NP_001236033.1| uncharacterized protein LOC100526922 [Glycine max]
           gi|255631155|gb|ACU15943.1| unknown [Glycine max]
          Length = 151

 Score =  241 bits (616), Expect = 1e-61
 Identities = 119/122 (97%), Positives = 120/122 (98%)
 Frame = +2

Query: 191 LEPVDREKTCPLLLRVFTKIGGHHTMEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEV 370
           LEPVDREKTCPLLLRVFTKIG HH+MEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEV
Sbjct: 30  LEPVDREKTCPLLLRVFTKIGSHHSMEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEV 89

Query: 371 APAARRRNAKLSFAFVFPDKNGRFKVQEVGKTLSYGNGRLDDSKALAELGFEIGDYLDVA 550
           APAARRRNAKLSFAFVFPDKNGRFKVQEVGKTLSYGNGRLDD KALAELGFEIGDYLDVA
Sbjct: 90  APAARRRNAKLSFAFVFPDKNGRFKVQEVGKTLSYGNGRLDDGKALAELGFEIGDYLDVA 149

Query: 551 IL 556
           IL
Sbjct: 150 IL 151


>ref|XP_003636869.1| Histone deacetylase complex subunit SAP18 [Medicago truncatula]
           gi|355502804|gb|AES84007.1| Histone deacetylase complex
           subunit SAP18 [Medicago truncatula]
           gi|388503400|gb|AFK39766.1| unknown [Medicago
           truncatula]
          Length = 151

 Score =  236 bits (601), Expect = 8e-60
 Identities = 115/122 (94%), Positives = 119/122 (97%)
 Frame = +2

Query: 191 LEPVDREKTCPLLLRVFTKIGGHHTMEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEV 370
           LEPVDREKTCPLLLRVFTKIG HH+M+DF+VRGKEPKDEVQIYTWKDATLRELTDLVKEV
Sbjct: 30  LEPVDREKTCPLLLRVFTKIGSHHSMDDFSVRGKEPKDEVQIYTWKDATLRELTDLVKEV 89

Query: 371 APAARRRNAKLSFAFVFPDKNGRFKVQEVGKTLSYGNGRLDDSKALAELGFEIGDYLDVA 550
           APAARRRNAKLSFAFVFPDKNGRFKVQEVGKTLSYG GRLDD KALA+LGFEIGDYLDVA
Sbjct: 90  APAARRRNAKLSFAFVFPDKNGRFKVQEVGKTLSYGTGRLDDGKALADLGFEIGDYLDVA 149

Query: 551 IL 556
           IL
Sbjct: 150 IL 151


>ref|XP_003529978.1| PREDICTED: histone deacetylase complex subunit SAP18-like [Glycine
           max]
          Length = 145

 Score =  226 bits (577), Expect = 5e-57
 Identities = 112/126 (88%), Positives = 119/126 (94%), Gaps = 4/126 (3%)
 Frame = +2

Query: 191 LEPVDREKTCPLLLRVFTKIGGHHTMEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEV 370
           LEP+DREKTCPLLLRVFTKIG HH+MEDFAVRGKEP+DEVQIYTWKDATLRELTDLVKEV
Sbjct: 20  LEPIDREKTCPLLLRVFTKIGSHHSMEDFAVRGKEPEDEVQIYTWKDATLRELTDLVKEV 79

Query: 371 APAARRRNAKLSFAFVFPDKNGRFKVQ----EVGKTLSYGNGRLDDSKALAELGFEIGDY 538
           APAARRRNAKLSFAF+FPDKNGRF V+    +VGKTLSYGNGRLDD KALAELGFEIGDY
Sbjct: 80  APAARRRNAKLSFAFIFPDKNGRFIVRKFEDDVGKTLSYGNGRLDDGKALAELGFEIGDY 139

Query: 539 LDVAIL 556
           LDV+IL
Sbjct: 140 LDVSIL 145


>ref|XP_002511764.1| Histone deacetylase complex subunit SAP18, putative [Ricinus
           communis] gi|223548944|gb|EEF50433.1| Histone
           deacetylase complex subunit SAP18, putative [Ricinus
           communis]
          Length = 147

 Score =  216 bits (549), Expect = 8e-54
 Identities = 105/122 (86%), Positives = 115/122 (94%)
 Frame = +2

Query: 191 LEPVDREKTCPLLLRVFTKIGGHHTMEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEV 370
           ++PVDREKTCPLLLRVFTKIG HH+ EDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEV
Sbjct: 26  VQPVDREKTCPLLLRVFTKIGSHHSKEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEV 85

Query: 371 APAARRRNAKLSFAFVFPDKNGRFKVQEVGKTLSYGNGRLDDSKALAELGFEIGDYLDVA 550
           APAARRR+A+LSFAFV+PDKNGRF V+EVGKT S  +G+LDD KALAELGF+IGDYLDVA
Sbjct: 86  APAARRRDARLSFAFVYPDKNGRFVVREVGKTYSNRSGKLDDGKALAELGFQIGDYLDVA 145

Query: 551 IL 556
           IL
Sbjct: 146 IL 147


>ref|XP_002277566.1| PREDICTED: histone deacetylase complex subunit SAP18 [Vitis
           vinifera] gi|296089118|emb|CBI38821.3| unnamed protein
           product [Vitis vinifera]
          Length = 152

 Score =  215 bits (548), Expect = 1e-53
 Identities = 108/122 (88%), Positives = 114/122 (93%), Gaps = 1/122 (0%)
 Frame = +2

Query: 194 EPVDREKTCPLLLRVFTKIGGHHTMEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 373
           EPVDREKTCPLLLRVFTKIG HH+ EDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA
Sbjct: 31  EPVDREKTCPLLLRVFTKIGCHHSKEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 90

Query: 374 PAARRRNAKLSFAFVFPDKNGRFKVQEVGKTLSYGNG-RLDDSKALAELGFEIGDYLDVA 550
           PAARRR+A LSFAFV+PD NGRF ++EVGKT SYGNG RLDD KALAELGF+IGDYLDVA
Sbjct: 91  PAARRRDAILSFAFVYPDTNGRFVLREVGKTFSYGNGKRLDDGKALAELGFQIGDYLDVA 150

Query: 551 IL 556
           IL
Sbjct: 151 IL 152


Top