BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00004935
         (2251 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003523491.1| PREDICTED: RNA polymerase sigma factor rpoD-...   659   0.0  
ref|XP_003604081.1| RNA polymerase sigma factor rpoD [Medicago t...   644   0.0  
ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-...   590   e-166
emb|CBI40014.3| unnamed protein product [Vitis vinifera]              575   e-161
ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-...   575   e-161

>ref|XP_003523491.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
          Length = 558

 Score =  659 bits (1701), Expect = 0.0
 Identities = 351/509 (68%), Positives = 390/509 (76%), Gaps = 2/509 (0%)
 Frame = -2

Query: 1782 NLESELAFDAAT-ANTPWSFVAQANFKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1606
            +LE +LA DA +  NT W ++A ANFK+                                
Sbjct: 51   SLEKKLALDAPSDPNTSWPYIAAANFKSTLSAESLLTNEEAVIVAAASEALALAKAAAKV 110

Query: 1605 XXXXXXXXXXKPPAEAGYRSQVSSTSDNLLLKWVQHME-AEDVVAGGSMGTGAEIMDDAD 1429
                      KPPAEA Y+S VSS SD+LLLKW + ME  ED VA  SMG GAEIM+  D
Sbjct: 111  AKDAALLVKKKPPAEAEYKSHVSSKSDDLLLKWFKQMEEVEDGVAEESMGAGAEIMEGVD 170

Query: 1428 INPGQEEFDDEELTCDELEHVEELLSDSIAARSSRQTXXXXXXXXXXXXATTNIVAFKSG 1249
            ++P +EE  D E + +ELE ++E LSDSIA RS RQT            ATTN  +FK G
Sbjct: 171  VSPSEEE-SDLEPSHEELERLQEQLSDSIAVRSRRQTERKAKRVRATEKATTNFTSFKPG 229

Query: 1248 STGRKKRVPKQEVDYSDPXXXXXXXXXXXXXXTPAEEIKLSEGIQDLIKLEKLQEDLAEK 1069
            S+ R+KRV  QEVDYSDP              TP EEIKLS GIQDL+KLEK+QEDLAE+
Sbjct: 230  SSSRRKRVSMQEVDYSDPLRYLRTTTSASRLLTPTEEIKLSAGIQDLLKLEKIQEDLAER 289

Query: 1068 CGGQPTFAQWAAVAGLDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGAGMNLQDL 889
             G QPTFAQWAAVAG+DQKTLRKRLNYG+FCK+KMIKSNIRLVIS+AKNYQG+GMNLQDL
Sbjct: 290  FGSQPTFAQWAAVAGVDQKTLRKRLNYGIFCKDKMIKSNIRLVISIAKNYQGSGMNLQDL 349

Query: 888  VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSVQSRTIRLPFHMVGATYRVK 709
            VQEGCRGLV+GAEKFD +KGFKFSTYAHWWIKQAVRKSLS QSRTIRLPFHMV ATYRVK
Sbjct: 350  VQEGCRGLVKGAEKFDGTKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 409

Query: 708  EARKQLYSENGRQPDDEEVAEAAGMSMKSLNAVLLTPKAPRSLEQKIGINQNLKPSEVIA 529
            EARKQLYSENGRQPDDEEVAEA G+SMK LNAVL+TPKAPRSLEQKIGINQNLKPSEVI+
Sbjct: 410  EARKQLYSENGRQPDDEEVAEATGLSMKRLNAVLMTPKAPRSLEQKIGINQNLKPSEVIS 469

Query: 528  DPDAETAEEQLTKEFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMMGVSR 349
            DPDAETAEEQL K+FMKKDLE+ LDSLNPRE+QV+RWRFGMDDGR KTLQEIGEM+GVSR
Sbjct: 470  DPDAETAEEQLLKQFMKKDLEEALDSLNPRERQVVRWRFGMDDGRTKTLQEIGEMLGVSR 529

Query: 348  ERIRQIESCAFRKLKNKKRTKHLQQYLVS 262
            ERIRQIES AF+KLKNKKRT HLQQYLVS
Sbjct: 530  ERIRQIESSAFKKLKNKKRTNHLQQYLVS 558


>ref|XP_003604081.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
            gi|355493129|gb|AES74332.1| RNA polymerase sigma factor
            rpoD [Medicago truncatula]
          Length = 572

 Score =  644 bits (1661), Expect = 0.0
 Identities = 341/435 (78%), Positives = 368/435 (84%), Gaps = 7/435 (1%)
 Frame = -2

Query: 1545 QVSSTSDNLLLKWVQHMEAEDVVAGG-SMGTGA---EIMDDADINPGQEEF--DDEELTC 1384
            Q+ ST +NLLLKWVQHMEA +  A   S+ TG    +IM+   I+P QE+   DD+E T 
Sbjct: 138  QLPSTPENLLLKWVQHMEAAEYAAAAVSIATGPAGPDIMEHLHISPNQEDDFNDDDEPTS 197

Query: 1383 DELEHVEELLSD-SIAARSSRQTXXXXXXXXXXXXATTNIVAFKSGSTGRKKRVPKQEVD 1207
            +ELE VEE L D SI ARS RQT            A TNIV+F+SGST RKKRV  QEVD
Sbjct: 198  EELEDVEEQLYDTSIDARSGRQTERKARRVRASGKAATNIVSFRSGSTTRKKRVRTQEVD 257

Query: 1206 YSDPXXXXXXXXXXXXXXTPAEEIKLSEGIQDLIKLEKLQEDLAEKCGGQPTFAQWAAVA 1027
            YSDP              T +EEIK SEGIQDLIKLEKLQEDLAEKCGGQPTFAQWA +A
Sbjct: 258  YSDPLRYLRTTTRTTRLLTTSEEIKFSEGIQDLIKLEKLQEDLAEKCGGQPTFAQWATMA 317

Query: 1026 GLDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGAGMNLQDLVQEGCRGLVRGAEK 847
            G+DQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQG+GM+LQDLVQEGCRGLVRGAEK
Sbjct: 318  GVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEK 377

Query: 846  FDASKGFKFSTYAHWWIKQAVRKSLSVQSRTIRLPFHMVGATYRVKEARKQLYSENGRQP 667
            +DASKGFKFSTYAHWWIKQAVRKSLSVQSRTIRLPFHMVGATY+VKEARKQLYSENGRQP
Sbjct: 378  YDASKGFKFSTYAHWWIKQAVRKSLSVQSRTIRLPFHMVGATYKVKEARKQLYSENGRQP 437

Query: 666  DDEEVAEAAGMSMKSLNAVLLTPKAPRSLEQKIGINQNLKPSEVIADPDAETAEEQLTKE 487
            DDEEVAEA G+SMK L+AVLLTPKAPRSLEQK+GINQ+LK SEV+ADP+AETAEEQL K+
Sbjct: 438  DDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKVGINQSLKLSEVLADPEAETAEEQLIKQ 497

Query: 486  FMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMMGVSRERIRQIESCAFRKL 307
            FMKKDLEKVLDSLNPREKQVI+WRFGMDDGRMKTLQEIGEMMGVSRERIRQIESCAFRKL
Sbjct: 498  FMKKDLEKVLDSLNPREKQVIKWRFGMDDGRMKTLQEIGEMMGVSRERIRQIESCAFRKL 557

Query: 306  KNKKRTKHLQQYLVS 262
            KNKKR KHLQQY VS
Sbjct: 558  KNKKRAKHLQQYFVS 572


>ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
            gi|449473951|ref|XP_004154029.1| PREDICTED: RNA
            polymerase sigma factor sigB-like [Cucumis sativus]
          Length = 580

 Score =  590 bits (1522), Expect = e-166
 Identities = 304/436 (69%), Positives = 347/436 (79%), Gaps = 1/436 (0%)
 Frame = -2

Query: 1566 AEAGYRSQVSSTSDNLLLKWVQHMEAEDV-VAGGSMGTGAEIMDDADINPGQEEFDDEEL 1390
            + AG +SQ S   D L  KW Q ME+E   + G  +G     M+   + P   E DD E 
Sbjct: 145  SRAGTKSQSSPKPDALHFKWAQFMESERADIIGEPVGVNKRPMEGDALEPSTTESDDMEP 204

Query: 1389 TCDELEHVEELLSDSIAARSSRQTXXXXXXXXXXXXATTNIVAFKSGSTGRKKRVPKQEV 1210
            T +ELE +++ LS+SI  +S RQT              T++++FKSGS+ RKKR   QEV
Sbjct: 205  TSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVLSFKSGSSSRKKRNSVQEV 264

Query: 1209 DYSDPXXXXXXXXXXXXXXTPAEEIKLSEGIQDLIKLEKLQEDLAEKCGGQPTFAQWAAV 1030
            DYSDP              T  EE++LSEGIQDL+KLE+LQE+L E+ G +PTFAQWAA 
Sbjct: 265  DYSDPLRYLRATTNTSRLLTATEELELSEGIQDLLKLERLQEELGERYGNEPTFAQWAAA 324

Query: 1029 AGLDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGAGMNLQDLVQEGCRGLVRGAE 850
            AG++Q+TLRKRLNYG  CK+KMIKSNIRLVIS+AKNYQGAGMNLQDLVQEGCRGLVRGAE
Sbjct: 325  AGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 384

Query: 849  KFDASKGFKFSTYAHWWIKQAVRKSLSVQSRTIRLPFHMVGATYRVKEARKQLYSENGRQ 670
            KFDASKGFKFSTYAHWWIKQAVRK LS QSRTIRLPFHMV ATYRVKEARKQL  ENGR 
Sbjct: 385  KFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLHENGRH 444

Query: 669  PDDEEVAEAAGMSMKSLNAVLLTPKAPRSLEQKIGINQNLKPSEVIADPDAETAEEQLTK 490
            PDD+E+AEAAG+SMK L AVL+TPKAPRSLEQKIGINQNLKPSEVI+DP+AET E+ L K
Sbjct: 445  PDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETCEDMLIK 504

Query: 489  EFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMMGVSRERIRQIESCAFRK 310
            +FMK+DLEKVLDSLNPREKQVIRWRFGM+DGRMKTLQEIGE+MGVSRERIRQIESCAFRK
Sbjct: 505  QFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRK 564

Query: 309  LKNKKRTKHLQQYLVS 262
            LKNKKRTKHLQQY++S
Sbjct: 565  LKNKKRTKHLQQYVMS 580


>emb|CBI40014.3| unnamed protein product [Vitis vinifera]
          Length = 575

 Score =  575 bits (1483), Expect = e-161
 Identities = 300/426 (70%), Positives = 341/426 (80%), Gaps = 1/426 (0%)
 Frame = -2

Query: 1536 STSDNLLLKWVQHMEAEDV-VAGGSMGTGAEIMDDADINPGQEEFDDEELTCDELEHVEE 1360
            S  D    + +Q  E E + + G S+G    ++D   +    E+ DD E T +ELE +E 
Sbjct: 150  SGDDTSQFRRIQFTETERIGILGDSVGAETGMVDYNSLQDVTEDSDDLEPTLEELELLEA 209

Query: 1359 LLSDSIAARSSRQTXXXXXXXXXXXXATTNIVAFKSGSTGRKKRVPKQEVDYSDPXXXXX 1180
              S SI  RS+RQ             A+  +V+ +SGST R+KRV  QEVDYSDP     
Sbjct: 210  EFSKSIVVRSNRQVERKARRARAAEKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLR 269

Query: 1179 XXXXXXXXXTPAEEIKLSEGIQDLIKLEKLQEDLAEKCGGQPTFAQWAAVAGLDQKTLRK 1000
                     T  EE++LSEGIQDL+KLEKLQEDL E+ G +PTFAQWAA AG+DQKTLR+
Sbjct: 270  GTTSTSRLLTATEELELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRR 329

Query: 999  RLNYGVFCKEKMIKSNIRLVISVAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 820
            R NYG+ CK+KMIKSNIRLVIS+AKNYQGAGMN+QDLVQEGCRGLVRGAEKFDASKGFKF
Sbjct: 330  RTNYGIRCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKF 389

Query: 819  STYAHWWIKQAVRKSLSVQSRTIRLPFHMVGATYRVKEARKQLYSENGRQPDDEEVAEAA 640
            STYAHWWIKQAVRKSLS QSRTIRLPFHMV ATYRVKEARKQLYSENGR P++EEVAEA 
Sbjct: 390  STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEAT 449

Query: 639  GMSMKSLNAVLLTPKAPRSLEQKIGINQNLKPSEVIADPDAETAEEQLTKEFMKKDLEKV 460
            G+SMK LNAVLLTPKAPRSL+QKIGINQNLKPSEVIADPDAETAEE L K+FM++DLEKV
Sbjct: 450  GLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLEKV 509

Query: 459  LDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMMGVSRERIRQIESCAFRKLKNKKRTKHL 280
            L+SLNPREKQVIRWR+G++DGR KTLQEIGE+MGVSRERIRQIESCAFRKLKNK+RTKHL
Sbjct: 510  LNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHL 569

Query: 279  QQYLVS 262
            QQYLVS
Sbjct: 570  QQYLVS 575


>ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
          Length = 578

 Score =  575 bits (1483), Expect = e-161
 Identities = 300/426 (70%), Positives = 341/426 (80%), Gaps = 1/426 (0%)
 Frame = -2

Query: 1536 STSDNLLLKWVQHMEAEDV-VAGGSMGTGAEIMDDADINPGQEEFDDEELTCDELEHVEE 1360
            S  D    + +Q  E E + + G S+G    ++D   +    E+ DD E T +ELE +E 
Sbjct: 153  SGDDTSQFRRIQFTETERIGILGDSVGAETGMVDYNSLQDVTEDSDDLEPTLEELELLEA 212

Query: 1359 LLSDSIAARSSRQTXXXXXXXXXXXXATTNIVAFKSGSTGRKKRVPKQEVDYSDPXXXXX 1180
              S SI  RS+RQ             A+  +V+ +SGST R+KRV  QEVDYSDP     
Sbjct: 213  EFSKSIVVRSNRQVERKARRARAAEKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLR 272

Query: 1179 XXXXXXXXXTPAEEIKLSEGIQDLIKLEKLQEDLAEKCGGQPTFAQWAAVAGLDQKTLRK 1000
                     T  EE++LSEGIQDL+KLEKLQEDL E+ G +PTFAQWAA AG+DQKTLR+
Sbjct: 273  GTTSTSRLLTATEELELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRR 332

Query: 999  RLNYGVFCKEKMIKSNIRLVISVAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 820
            R NYG+ CK+KMIKSNIRLVIS+AKNYQGAGMN+QDLVQEGCRGLVRGAEKFDASKGFKF
Sbjct: 333  RTNYGIRCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKF 392

Query: 819  STYAHWWIKQAVRKSLSVQSRTIRLPFHMVGATYRVKEARKQLYSENGRQPDDEEVAEAA 640
            STYAHWWIKQAVRKSLS QSRTIRLPFHMV ATYRVKEARKQLYSENGR P++EEVAEA 
Sbjct: 393  STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEAT 452

Query: 639  GMSMKSLNAVLLTPKAPRSLEQKIGINQNLKPSEVIADPDAETAEEQLTKEFMKKDLEKV 460
            G+SMK LNAVLLTPKAPRSL+QKIGINQNLKPSEVIADPDAETAEE L K+FM++DLEKV
Sbjct: 453  GLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLEKV 512

Query: 459  LDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMMGVSRERIRQIESCAFRKLKNKKRTKHL 280
            L+SLNPREKQVIRWR+G++DGR KTLQEIGE+MGVSRERIRQIESCAFRKLKNK+RTKHL
Sbjct: 513  LNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHL 572

Query: 279  QQYLVS 262
            QQYLVS
Sbjct: 573  QQYLVS 578