BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00004915
         (385 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003592708.1| Pentatricopeptide repeat protein-like protei...   170   1e-40
ref|XP_003555199.1| PREDICTED: putative pentatricopeptide repeat...   167   1e-39
ref|XP_002307160.1| predicted protein [Populus trichocarpa] gi|2...   119   3e-25
ref|XP_002534039.1| pentatricopeptide repeat-containing protein,...   119   3e-25
ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat...   110   1e-22

>ref|XP_003592708.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
           gi|355481756|gb|AES62959.1| Pentatricopeptide repeat
           protein-like protein [Medicago truncatula]
          Length = 1430

 Score =  170 bits (430), Expect = 1e-40
 Identities = 86/127 (67%), Positives = 99/127 (77%)
 Frame = +3

Query: 3   IDEACRHLQMMIHSKSSSTDGAQMDMDAFVEMEDRLISPNANSFRIVIDGLLKNGRLDFA 182
           +DEA R ++MMI SKSS TD  +  MD F +   R++ PN  SF IVIDG LKN +LD A
Sbjct: 387 MDEAYRLIRMMIQSKSS-TDSDENRMDVFFKTVKRMVFPNITSFSIVIDGFLKNDQLDLA 445

Query: 183 LGLFNDMKRFVGKPDVLIYNNMISGLCKSDRLEESYELLREMKESGIEPTRFTYNSIYRC 362
           L LFNDM+RFV KP +LIYNN+I  LCKS+RLE+SYELLREMKE GIEPT FTYNSIY C
Sbjct: 446 LSLFNDMRRFVDKPTILIYNNLIDSLCKSNRLEKSYELLREMKELGIEPTHFTYNSIYGC 505

Query: 363 LCKRKDV 383
           LCKRKDV
Sbjct: 506 LCKRKDV 512



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 31/89 (34%), Positives = 49/89 (55%)
 Frame = +3

Query: 117 PNANSFRIVIDGLLKNGRLDFALGLFNDMKRFVGKPDVLIYNNMISGLCKSDRLEESYEL 296
           P+  S+   I GL+    +D A+ +F D+      PDV+ +N +I GLCK +R  E+ +L
Sbjct: 564 PDIVSYSAAIGGLVNIQEVDHAMKIFKDLWSHGHCPDVVCFNVLIRGLCKVNRFTEAEDL 623

Query: 297 LREMKESGIEPTRFTYNSIYRCLCKRKDV 383
             E+ + G+ P+  TYN    C CK  +V
Sbjct: 624 FHELVKRGLSPSVVTYNLFIDCWCKNGNV 652



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 30/97 (30%), Positives = 54/97 (55%)
 Frame = +3

Query: 81  DAFVEMEDRLISPNANSFRIVIDGLLKNGRLDFALGLFNDMKRFVGKPDVLIYNNMISGL 260
           D F E+  R +SP+  ++ + ID   KNG +D A+     M +    P V+ Y  ++ G 
Sbjct: 622 DLFHELVKRGLSPSVVTYNLFIDCWCKNGNVDKAMAHLFRMTKEDKVPSVVTYTTLVDGF 681

Query: 261 CKSDRLEESYELLREMKESGIEPTRFTYNSIYRCLCK 371
           CK +R +++  L +EM+++G  P + T+ ++   LCK
Sbjct: 682 CKEERPDDAILLFKEMEKNGCPPNQITFMALIYGLCK 718



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 1/128 (0%)
 Frame = +3

Query: 3   IDEACRHLQMMIHSKSSSTDGAQMDMDAFVEMEDRLISPNANSFRIVIDGLLKNGRLDFA 182
           +DE    +  +  SK    D A   ++   E   RL   +  +F ++I G +K  R+D A
Sbjct: 228 VDERVCSMMALCFSKLGEVDKAFELVERMGECGMRL---SEKTFCVLIHGFVKESRVDKA 284

Query: 183 LGLFNDMKRFVG-KPDVLIYNNMISGLCKSDRLEESYELLREMKESGIEPTRFTYNSIYR 359
           L LF+ M+R     PDV +Y+ +I GLCK+   + +  L  EMKE G+ P       +  
Sbjct: 285 LQLFDKMRREDSFTPDVSLYDVLIGGLCKNKDTDRAISLFSEMKEFGVRPDIGILTKLIS 344

Query: 360 CLCKRKDV 383
           C    K +
Sbjct: 345 CFSDSKSM 352


>ref|XP_003555199.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial-like [Glycine max]
          Length = 942

 Score =  167 bits (422), Expect = 1e-39
 Identities = 84/127 (66%), Positives = 98/127 (77%)
 Frame = +3

Query: 3   IDEACRHLQMMIHSKSSSTDGAQMDMDAFVEMEDRLISPNANSFRIVIDGLLKNGRLDFA 182
           +DEACR L+MMI SK+S      + MD F     +L+ PN  SF IVI+GLLKN +LD A
Sbjct: 396 MDEACRFLRMMIQSKASG----DVQMDGFFNKVKKLVFPNGASFSIVINGLLKNDQLDLA 451

Query: 183 LGLFNDMKRFVGKPDVLIYNNMISGLCKSDRLEESYELLREMKESGIEPTRFTYNSIYRC 362
           L LFNDMK+FV +P VLIYNN+I+ LC S+RLEES ELLREMKESG+EPT FTYNSIY C
Sbjct: 452 LSLFNDMKQFVDRPSVLIYNNLINSLCDSNRLEESRELLREMKESGVEPTHFTYNSIYGC 511

Query: 363 LCKRKDV 383
           LCKRKDV
Sbjct: 512 LCKRKDV 518



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
 Frame = +3

Query: 75  DMDAFVEMEDRL----ISPNANSFRIVIDGLLKNGRLDFALGLFNDMKRFVGKPDVLIYN 242
           D+D   E+ +R+    +  N  +F ++I G +K GR+D AL LF+ M R    P V +++
Sbjct: 257 DVDKAFELVERMEGHGMRLNEKTFCVLIHGFVKEGRVDRALQLFDIMCRVGFTPPVSLFD 316

Query: 243 NMISGLCKSDRLEESYELLREMKESGIEP 329
            +I GLC++     +  LL EMKE G+ P
Sbjct: 317 VLIGGLCRNGDSHRALSLLSEMKEFGVTP 345


>ref|XP_002307160.1| predicted protein [Populus trichocarpa] gi|222856609|gb|EEE94156.1|
           predicted protein [Populus trichocarpa]
          Length = 726

 Score =  119 bits (298), Expect = 3e-25
 Identities = 55/92 (59%), Positives = 72/92 (78%)
 Frame = +3

Query: 108 LISPNANSFRIVIDGLLKNGRLDFALGLFNDMKRFVGKPDVLIYNNMISGLCKSDRLEES 287
           ++ PN+ +F IVI+GL+K G LD A+GLF DM R   KPD+L+YNN+I GLC S+RL+ES
Sbjct: 319 MVPPNSTTFSIVINGLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQES 378

Query: 288 YELLREMKESGIEPTRFTYNSIYRCLCKRKDV 383
             LL+EM+ESGIEPT FT N I+ CLC+R D+
Sbjct: 379 CGLLQEMEESGIEPTSFTNNCIFGCLCRRHDI 410



 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 5/122 (4%)
 Frame = +3

Query: 21  HLQMMIHSKSSSTD----GAQMDMDAF-VEMEDRLISPNANSFRIVIDGLLKNGRLDFAL 185
           H+  + HS S   +    G +++   F V+M +    P+  ++   +DGL+K   +D AL
Sbjct: 425 HVPWIKHSTSLVKELCKHGKEVEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQAL 484

Query: 186 GLFNDMKRFVGKPDVLIYNNMISGLCKSDRLEESYELLREMKESGIEPTRFTYNSIYRCL 365
            LF D+      PDV+ YN +I GLCK+ R+ E+  LL EM+E G+ P+  TYN++   L
Sbjct: 485 KLFQDICAQGYCPDVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGL 544

Query: 366 CK 371
           CK
Sbjct: 545 CK 546



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 31/84 (36%), Positives = 46/84 (54%)
 Frame = +3

Query: 117 PNANSFRIVIDGLLKNGRLDFALGLFNDMKRFVGKPDVLIYNNMISGLCKSDRLEESYEL 296
           P+  ++ I+I GL K  R+  A  L ++M+     P  + YN +I GLCK+D LEE+   
Sbjct: 497 PDVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAMLF 556

Query: 297 LREMKESGIEPTRFTYNSIYRCLC 368
           L  M E   EP   TY+++   LC
Sbjct: 557 LSMMIEKEREPNVITYSTLINGLC 580


>ref|XP_002534039.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223525946|gb|EEF28343.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 634

 Score =  119 bits (297), Expect = 3e-25
 Identities = 64/127 (50%), Positives = 85/127 (66%)
 Frame = +3

Query: 3   IDEACRHLQMMIHSKSSSTDGAQMDMDAFVEMEDRLISPNANSFRIVIDGLLKNGRLDFA 182
           ID+AC  L+ M+ +     D  Q  +       D  I PN  SF IVI+GL++  +LD A
Sbjct: 198 IDKACCLLRNMMGN--GDDDDVQYKL-----FRDEKIRPNTASFSIVINGLMQACKLDLA 250

Query: 183 LGLFNDMKRFVGKPDVLIYNNMISGLCKSDRLEESYELLREMKESGIEPTRFTYNSIYRC 362
           + LF DM       D+L+YNN+I+GLC SDRLEESY+LL+EM+ESG +PT+FT NSI+ C
Sbjct: 251 VCLFQDMAEIGCNRDLLLYNNLINGLCNSDRLEESYKLLKEMEESGFKPTQFTLNSIFGC 310

Query: 363 LCKRKDV 383
           LCKR+DV
Sbjct: 311 LCKRQDV 317



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 31/95 (32%), Positives = 49/95 (51%)
 Frame = +3

Query: 87  FVEMEDRLISPNANSFRIVIDGLLKNGRLDFALGLFNDMKRFVGKPDVLIYNNMISGLCK 266
           F EM  + + P+  ++ ++IDG  KNG +D A+     M     +P+V  Y  +I GLCK
Sbjct: 429 FNEMVMKGLIPSVVTYNLLIDGWCKNGCIDDAMNCLCSMSAKEREPNVFTYTTLIDGLCK 488

Query: 267 SDRLEESYELLREMKESGIEPTRFTYNSIYRCLCK 371
           + R +++  L  EM+  G  P R  +      LCK
Sbjct: 489 AGRPDDAVMLWNEMRRRGCRPNRVAFMGFIHGLCK 523



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 32/92 (34%), Positives = 51/92 (55%)
 Frame = +3

Query: 78  MDAFVEMEDRLISPNANSFRIVIDGLLKNGRLDFALGLFNDMKRFVGKPDVLIYNNMISG 257
           M+    M  +   PN  ++  +IDGL K GR D A+ L+N+M+R   +P+ + +   I G
Sbjct: 461 MNCLCSMSAKEREPNVFTYTTLIDGLCKAGRPDDAVMLWNEMRRRGCRPNRVAFMGFIHG 520

Query: 258 LCKSDRLEESYELLREMKESGIEPTRFTYNSI 353
           LCK D+ E +     EM+E  +EP  + Y S+
Sbjct: 521 LCKCDKPEAALIHFHEMEEEEMEPDTYVYISL 552



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 30/85 (35%), Positives = 47/85 (55%)
 Frame = +3

Query: 117 PNANSFRIVIDGLLKNGRLDFALGLFNDMKRFVGKPDVLIYNNMISGLCKSDRLEESYEL 296
           PN  ++  ++ GL++   +D AL LF D+      PDV+ YN ++ GL ++ R EE+  L
Sbjct: 369 PNIIAYSALLGGLIEVQEVDQALKLFKDISARGRCPDVIAYNILMKGLYEAHRTEEARNL 428

Query: 297 LREMKESGIEPTRFTYNSIYRCLCK 371
             EM   G+ P+  TYN +    CK
Sbjct: 429 FNEMVMKGLIPSVVTYNLLIDGWCK 453


>ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial [Vitis vinifera]
           gi|296085293|emb|CBI29025.3| unnamed protein product
           [Vitis vinifera]
          Length = 854

 Score =  110 bits (275), Expect = 1e-22
 Identities = 54/96 (56%), Positives = 68/96 (70%)
 Frame = +3

Query: 96  MEDRLISPNANSFRIVIDGLLKNGRLDFALGLFNDMKRFVGKPDVLIYNNMISGLCKSDR 275
           M   ++ P+  SF IVIDGL   G+LD AL LF DM R   K +VL+YNN+I  L  S+R
Sbjct: 448 MVKEMVRPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNR 507

Query: 276 LEESYELLREMKESGIEPTRFTYNSIYRCLCKRKDV 383
           LEE Y LL+EMK SG  PT+FT+NSI+ CLC+R+DV
Sbjct: 508 LEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDV 543



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 38/109 (34%), Positives = 58/109 (53%)
 Frame = +3

Query: 3   IDEACRHLQMMIHSKSSSTDGAQMDMDAFVEMEDRLISPNANSFRIVIDGLLKNGRLDFA 182
           +D     + ++  SK    D A    +    MED  I  N  +F ++I G ++  R+D A
Sbjct: 266 VDGHVLSILVLTFSKCGEVDKA---FELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKA 322

Query: 183 LGLFNDMKRFVGKPDVLIYNNMISGLCKSDRLEESYELLREMKESGIEP 329
           L LF  M++    PDV +Y+ +I GLC    +E++  LL EMKE GI+P
Sbjct: 323 LQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDP 371



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 32/89 (35%), Positives = 51/89 (57%)
 Frame = +3

Query: 117 PNANSFRIVIDGLLKNGRLDFALGLFNDMKRFVGKPDVLIYNNMISGLCKSDRLEESYEL 296
           P+  ++   IDG +K   +D AL +F D+      PDV+ YN +I+G CK  R+ E++++
Sbjct: 595 PDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDI 654

Query: 297 LREMKESGIEPTRFTYNSIYRCLCKRKDV 383
           L EM   G+ P+  TYN +    CK  D+
Sbjct: 655 LDEMVAKGLVPSVVTYNLLIDGWCKNGDI 683



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
 Frame = +3

Query: 81  DAFVEMEDRLISPNANSFRIVIDGLLKNGRLDFALGLFNDMKRFVGK---PDVLIYNNMI 251
           D   EM  + + P+  ++ ++IDG  KNG +D A   F+ + R VGK   P+V+ Y  +I
Sbjct: 653 DILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQA---FHCLSRMVGKEREPNVITYTTLI 709

Query: 252 SGLCKSDRLEESYELLREMKESGIEPTRFTYNSIYRCLCK 371
            GLC + R +++  L  EM+  G  P R ++ ++   LCK
Sbjct: 710 DGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCK 749