BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00004641
         (1005 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ...   198   1e-48
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...   196   7e-48
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]              191   2e-46
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr...   191   2e-46
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta...   184   4e-44

>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 676

 Score =  198 bits (504), Expect = 1e-48
 Identities = 111/325 (34%), Positives = 168/325 (51%), Gaps = 16/325 (4%)
 Frame = -1

Query: 1002 VWKLPLPENIKHFIWLILHGSLPTNLFRANRHISLDSSCNRCGVAQESISHAIRNYYKAR 823
            VW++ +PE  + F+WL+ +  + TN  R  RH++    C  C  A ES+ H +R+     
Sbjct: 347  VWRVMVPERARIFLWLVGNQVVLTNAERVRRHMADSDVCPLCKGASESLIHVLRDCPAMM 406

Query: 822  QIW-RVLHMGQQQHFYTQPLKEWLYSNLTGHQS-------IMFAVSCWIIWKARNVEIFS 667
             IW RV+ + +Q+ F+   L EW+Y NL             +FA++ W  WK R   +F 
Sbjct: 407  GIWMRVVPVMEQRRFFETSLLEWMYGNLKERSDSERRSWPTLFALTVWWGWKWRCGYVFG 466

Query: 666  DKVWDIWFVQNQIHVLKETVAQAFGHH--------DKNRVQREVTWLAPPFDWVKLNTDG 511
            +        ++++  LK  VA+    H        +   V+R + W  P   WV +NTDG
Sbjct: 467  EDSR----CRDRVKFLKSAVAEVEAAHLAANGDAREDVLVERMIAWRKPAEGWVTMNTDG 522

Query: 510  SSFGNPGRADFGGLIRDPHGQWLTGFSGSCGITTNMNAELLAIYHGLNVAWNRGFKKVIC 331
            +S GNPG+A  GG+IRD HG WL GF+ + G+ +   AEL  +Y+GL VAW RG+++V  
Sbjct: 523  ASHGNPGQATAGGVIRDEHGSWLVGFALNIGVCSAPLAELWGVYYGLVVAWERGWRRVRL 582

Query: 330  ESDSTTVLSLITQLTDDLHPHAPLIQKIQSFTQRDWQVSFVHILREGNSCADWLAKKGAS 151
            E DS  V+  +     D HP A L++    F  +DW V   H+ RE N  AD LA    +
Sbjct: 583  EVDSALVVGFLQSGIGDSHPLAFLVRLCHGFISKDWIVRITHVYREANRLADGLANYAFT 642

Query: 150  EDHTLVIWDVCPTQLDSLMLADACG 76
                 ++ D CP  + S++L D  G
Sbjct: 643  LPFGFLLLDSCPEHVSSILLEDVMG 667


>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1231

 Score =  196 bits (498), Expect = 7e-48
 Identities = 108/317 (34%), Positives = 171/317 (53%), Gaps = 8/317 (2%)
 Frame = -1

Query: 1002 VWKLPLPENIKHFIWLILHGSLPTNLFRANRHISLDSSCNRCGVAQESISHAIRNYYKAR 823
            +WKL  PE ++ FIWL+    + TN+ R  RH+S ++ C+ C  A+E+I H +R+     
Sbjct: 906  IWKLITPERVRVFIWLVSQNVIMTNVERVRRHLSENAICSVCNGAEETILHVLRDCPAME 965

Query: 822  QIWR-VLHMGQQQHFYTQPLKEWLYSNLTGHQSI---MFAVSCWIIWKARNVEIFSDKVW 655
             IWR +L + +   F++Q L EWL++N+   + I   +F +  W  WK R  ++F ++  
Sbjct: 966  PIWRRLLPLRRHHEFFSQSLLEWLFTNMDPVKGIWPTLFGMGIWWAWKWRCCDVFGERKI 1025

Query: 654  ---DIWFVQNQIHVLKETVAQAFGHHDKN-RVQREVTWLAPPFDWVKLNTDGSSFGNPGR 487
                + F+++    ++     A G+     RV+R + W  P   WVK+ TDG+S GN G 
Sbjct: 1026 CRDRLKFIKDMAEEVRRVHVGAVGNRPNGVRVERMIRWQVPSDGWVKITTDGASRGNHGL 1085

Query: 486  ADFGGLIRDPHGQWLTGFSGSCGITTNMNAELLAIYHGLNVAWNRGFKKVICESDSTTVL 307
            A  GG IR+  G+WL GF+ + G      AEL   Y+GL +AW++GF++V  + D   V+
Sbjct: 1086 AAAGGAIRNGQGEWLGGFALNIGSCAAPLAELWGAYYGLLIAWDKGFRRVELDLDCKLVV 1145

Query: 306  SLITQLTDDLHPHAPLIQKIQSFTQRDWQVSFVHILREGNSCADWLAKKGASEDHTLVIW 127
              ++    + HP + L++  Q F  RDW V   H+ RE N  AD LA    +    L  +
Sbjct: 1146 GFLSTGVSNAHPLSFLVRLCQGFFTRDWLVRVSHVYREANRLADGLANYAFTLPLGLHCF 1205

Query: 126  DVCPTQLDSLMLADACG 76
            D CP  +  L+LAD  G
Sbjct: 1206 DACPEGVRLLLLADVNG 1222


>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
          Length = 1055

 Score =  191 bits (485), Expect = 2e-46
 Identities = 112/325 (34%), Positives = 166/325 (51%), Gaps = 16/325 (4%)
 Frame = -1

Query: 1002 VWKLPLPENIKHFIWLILHGSLPTNLFRANRHISLDSSCNRCGVAQESISHAIRNYYKAR 823
            +WK+ +PE +K F+WL+ + ++ T   R  RH+S  + C  C    ES+ H +R+     
Sbjct: 400  LWKVRVPERVKTFLWLVGNQAVMTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQL 459

Query: 822  QIW-RVLHMGQQQHFYTQPLKEWLYSNLTGHQ-------SIMFAVSCWIIWKARNVEIFS 667
             IW RV+   +QQ F+++ L EWLY NL           S +FAV  W  WK R   IF 
Sbjct: 460  GIWVRVVPQRRQQGFFSKSLFEWLYDNLGDRSGCEDIPWSTIFAVIIWWGWKWRCGNIFG 519

Query: 666  DKVWDIWFVQNQIHVLKETVAQAFGHHDKN--------RVQREVTWLAPPFDWVKLNTDG 511
            +        ++++  +KE   + +  H  N        RV+R + W++P   WVK+NTDG
Sbjct: 520  ENTK----CRDRVKFVKEWAVEVYRAHSGNVLVGITQPRVERMIGWVSPCVGWVKVNTDG 575

Query: 510  SSFGNPGRADFGGLIRDPHGQWLTGFSGSCGITTNMNAELLAIYHGLNVAWNRGFKKVIC 331
            +S GNPG A  GG++RD  G W  GFS + G  +   AEL  +Y+GL  AW +   +V  
Sbjct: 576  ASRGNPGLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRVEL 635

Query: 330  ESDSTTVLSLITQLTDDLHPHAPLIQKIQSFTQRDWQVSFVHILREGNSCADWLAKKGAS 151
            E DS  ++  +     D HP + L++    F Q+DW V  VH+ RE N  AD LA    S
Sbjct: 636  EVDSEVIVGFLKTGISDSHPLSFLVRLCHGFLQKDWLVRIVHVYREANRLADGLANYAFS 695

Query: 150  EDHTLVIWDVCPTQLDSLMLADACG 76
                   +D+ P  + SL+  D  G
Sbjct: 696  LSLGFHSFDLVPDAMSSLLREDTLG 720


>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
          Length = 620

 Score =  191 bits (485), Expect = 2e-46
 Identities = 112/325 (34%), Positives = 166/325 (51%), Gaps = 16/325 (4%)
 Frame = -1

Query: 1002 VWKLPLPENIKHFIWLILHGSLPTNLFRANRHISLDSSCNRCGVAQESISHAIRNYYKAR 823
            +WK+ +PE +K F+WL+ + ++ T   R  RH+S  + C  C    ES+ H +R+     
Sbjct: 291  LWKVRVPERVKTFLWLVGNQAVMTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQL 350

Query: 822  QIW-RVLHMGQQQHFYTQPLKEWLYSNLTGHQ-------SIMFAVSCWIIWKARNVEIFS 667
             IW RV+   +QQ F+++ L EWLY NL           S +FAV  W  WK R   IF 
Sbjct: 351  GIWVRVVPQRRQQGFFSKSLFEWLYDNLGDRSGCEDIPWSTIFAVIIWWGWKWRCGNIFG 410

Query: 666  DKVWDIWFVQNQIHVLKETVAQAFGHHDKN--------RVQREVTWLAPPFDWVKLNTDG 511
            +        ++++  +KE   + +  H  N        RV+R + W++P   WVK+NTDG
Sbjct: 411  ENTK----CRDRVKFVKEWAVEVYRAHSGNVLVGITQPRVERMIGWVSPCVGWVKVNTDG 466

Query: 510  SSFGNPGRADFGGLIRDPHGQWLTGFSGSCGITTNMNAELLAIYHGLNVAWNRGFKKVIC 331
            +S GNPG A  GG++RD  G W  GFS + G  +   AEL  +Y+GL  AW +   +V  
Sbjct: 467  ASRGNPGLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRVEL 526

Query: 330  ESDSTTVLSLITQLTDDLHPHAPLIQKIQSFTQRDWQVSFVHILREGNSCADWLAKKGAS 151
            E DS  ++  +     D HP + L++    F Q+DW V  VH+ RE N  AD LA    S
Sbjct: 527  EVDSEVIVGFLKTGISDSHPLSFLVRLCHGFLQKDWLVRIVHVYREANRLADGLANYAFS 586

Query: 150  EDHTLVIWDVCPTQLDSLMLADACG 76
                   +D+ P  + SL+  D  G
Sbjct: 587  LSLGFHSFDLVPDAMSSLLREDTLG 611


>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 321

 Score =  184 bits (466), Expect = 4e-44
 Identities = 111/316 (35%), Positives = 169/316 (53%), Gaps = 12/316 (3%)
 Frame = -1

Query: 984 PENIKHFIWLILHGSLPTNLFRANRHISLDSSCNRCGVAQESISHAIRNYYKARQIW-RV 808
           PE ++ F+WL++   + TN+ R  RH+S    C  C   +E+I H +R+      IW R+
Sbjct: 3   PERVRVFLWLVVQQVIITNVERYRRHLSDTRVCQICQGGEETILHVLRDCPAMAGIWSRL 62

Query: 807 LHMGQQQHFYTQPLKEWLYSNLT--GHQSIMFAVSCWIIWKARNVEIFS------DKVWD 652
           +   Q + F+T  L EW+Y NL   G    +F ++ W  WK R   IF       D+V  
Sbjct: 63  VPRDQIRQFFTASLLEWIYKNLRERGSWPTVFVMAVWWGWKWRCGNIFGGNGKCRDRVKF 122

Query: 651 IWFVQNQIHVLKETVAQAFGHHDK---NRVQREVTWLAPPFDWVKLNTDGSSFGNPGRAD 481
           I  +  ++      +A AF   ++   +RV+R V+W++P   WVKLNTDG+S GNPG A 
Sbjct: 123 IKDLAEEV-----AIANAFVKGNEVRVSRVERLVSWVSPEDGWVKLNTDGASRGNPGFAT 177

Query: 480 FGGLIRDPHGQWLTGFSGSCGITTNMNAELLAIYHGLNVAWNRGFKKVICESDSTTVLSL 301
            GG++RD +G W+ GF+ + G+ +   AEL  +Y+GL +AW RG ++V  E DS  V+  
Sbjct: 178 AGGVLRDHNGAWIGGFAVNIGVCSAPLAELWGVYYGLFIAWGRGARRVELEVDSKMVVGF 237

Query: 300 ITQLTDDLHPHAPLIQKIQSFTQRDWQVSFVHILREGNSCADWLAKKGASEDHTLVIWDV 121
           +T    D HP + L++    F  + W V   H+ RE N  AD LA    S    L + + 
Sbjct: 238 LTTGIADSHPLSFLLRLCYDFLSKGWIVRISHVYREANRLADGLANYAFSLSLGLHLLES 297

Query: 120 CPTQLDSLMLADACGV 73
            P  + S++L D  GV
Sbjct: 298 RPDVVSSILLDDVAGV 313