BLASTX nr result

ID: Glycyrrhiza24_contig00004174 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00004174
         (912 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003597741.1| 30S ribosomal protein S17 [Medicago truncatu...   144   3e-32
gb|AFK35250.1| unknown [Medicago truncatula]                          142   8e-32
ref|XP_004141765.1| PREDICTED: 30S ribosomal protein S17, chloro...   129   7e-28
emb|CBI36128.3| unnamed protein product [Vitis vinifera]              129   9e-28
ref|XP_002284468.1| PREDICTED: 30S ribosomal protein S17, chloro...   128   2e-27

>ref|XP_003597741.1| 30S ribosomal protein S17 [Medicago truncatula]
           gi|217075408|gb|ACJ86064.1| unknown [Medicago
           truncatula] gi|355486789|gb|AES67992.1| 30S ribosomal
           protein S17 [Medicago truncatula]
           gi|388491878|gb|AFK34005.1| unknown [Medicago
           truncatula]
          Length = 151

 Score =  144 bits (363), Expect = 3e-32
 Identities = 82/146 (56%), Positives = 95/146 (65%), Gaps = 2/146 (1%)
 Frame = -1

Query: 855 MWLLQLPPKLSTPFLS--NGLGFTTRXXXXXXXXXXXXXXXXXLMPAIRAMKSMEGRVVC 682
           MWLLQLP  LSTPFL+  NG+  T                    +P+I+AMK+MEG+VVC
Sbjct: 1   MWLLQLPSTLSTPFLNGNNGVALTR----LSKPTSTLSLSQPQSLPSIKAMKTMEGKVVC 56

Query: 681 DINDKTVAVEVVRLAPHPXXXXXXXXXXXYQAHDPDNMFKVGDIVQLRKTRPISKNKTFL 502
             NDKTV+VEV RLAPHP           YQAHDP+N+FKVGD+VQL K RPISKNKTFL
Sbjct: 57  ATNDKTVSVEVTRLAPHPKYKKRIRMKKKYQAHDPENVFKVGDVVQLCKIRPISKNKTFL 116

Query: 501 AVPVPARNRKSTDDESPYGGDLPIPL 424
           AVPVPARN    ++ S   GDL IPL
Sbjct: 117 AVPVPARNSGKANNSS---GDLDIPL 139


>gb|AFK35250.1| unknown [Medicago truncatula]
          Length = 151

 Score =  142 bits (359), Expect = 8e-32
 Identities = 81/146 (55%), Positives = 94/146 (64%), Gaps = 2/146 (1%)
 Frame = -1

Query: 855 MWLLQLPPKLSTPFLS--NGLGFTTRXXXXXXXXXXXXXXXXXLMPAIRAMKSMEGRVVC 682
           MWLLQLP  LSTPFL+  NG+  T                    +P+I+AMK+MEG+VVC
Sbjct: 1   MWLLQLPSTLSTPFLNGNNGVALTR----LSKPTSTLSLSQPQSLPSIKAMKTMEGKVVC 56

Query: 681 DINDKTVAVEVVRLAPHPXXXXXXXXXXXYQAHDPDNMFKVGDIVQLRKTRPISKNKTFL 502
             NDKTV+VEV RLAPHP           YQAHDP+N+FKVGD+VQL K RPISKNKTFL
Sbjct: 57  ATNDKTVSVEVTRLAPHPKYKKRIRMKKKYQAHDPENVFKVGDVVQLCKIRPISKNKTFL 116

Query: 501 AVPVPARNRKSTDDESPYGGDLPIPL 424
           AVP PARN    ++ S   GDL IPL
Sbjct: 117 AVPAPARNSGKANNSS---GDLDIPL 139


>ref|XP_004141765.1| PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Cucumis
           sativus] gi|449519627|ref|XP_004166836.1| PREDICTED: 30S
           ribosomal protein S17, chloroplastic-like [Cucumis
           sativus]
          Length = 164

 Score =  129 bits (325), Expect = 7e-28
 Identities = 66/102 (64%), Positives = 75/102 (73%)
 Frame = -1

Query: 729 MPAIRAMKSMEGRVVCDINDKTVAVEVVRLAPHPXXXXXXXXXXXYQAHDPDNMFKVGDI 550
           +P+IRAM+S++GRVVC  NDKTVAVEVVRLAPHP           YQAHDPDN F+VGD 
Sbjct: 56  LPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDF 115

Query: 549 VQLRKTRPISKNKTFLAVPVPARNRKSTDDESPYGGDLPIPL 424
           V+L K RPISK KTFLA+PVPARN K    E   GG+L IPL
Sbjct: 116 VELEKCRPISKMKTFLAIPVPARNSKKKAVEGGEGGELGIPL 157


>emb|CBI36128.3| unnamed protein product [Vitis vinifera]
          Length = 189

 Score =  129 bits (324), Expect = 9e-28
 Identities = 77/145 (53%), Positives = 91/145 (62%)
 Frame = -1

Query: 858 AMWLLQLPPKLSTPFLSNGLGFTTRXXXXXXXXXXXXXXXXXLMPAIRAMKSMEGRVVCD 679
           AM LLQ   KL+TPFL +G    +                   +P IRAMKSM+GRVVC 
Sbjct: 44  AMSLLQ-SLKLTTPFL-HGSSNLSLLSKPSSTSLASPPPPPTFLPPIRAMKSMQGRVVCA 101

Query: 678 INDKTVAVEVVRLAPHPXXXXXXXXXXXYQAHDPDNMFKVGDIVQLRKTRPISKNKTFLA 499
            +DKTVAVEVVRLAPHP           YQAHDPDN FKVGD+VQL K+RPISK KTF+A
Sbjct: 102 TSDKTVAVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDVVQLEKSRPISKTKTFVA 161

Query: 498 VPVPARNRKSTDDESPYGGDLPIPL 424
           +PVP RNR  + + +   G+L IPL
Sbjct: 162 IPVPNRNRAKSQEAA--AGELEIPL 184


>ref|XP_002284468.1| PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Vitis
           vinifera]
          Length = 145

 Score =  128 bits (321), Expect = 2e-27
 Identities = 72/136 (52%), Positives = 86/136 (63%)
 Frame = -1

Query: 831 KLSTPFLSNGLGFTTRXXXXXXXXXXXXXXXXXLMPAIRAMKSMEGRVVCDINDKTVAVE 652
           KL+TPFL +G    +                   +P IRAMKSM+GRVVC  +DKTVAVE
Sbjct: 8   KLTTPFL-HGSSNLSLLSKPSSTSLASPPPPPTFLPPIRAMKSMQGRVVCATSDKTVAVE 66

Query: 651 VVRLAPHPXXXXXXXXXXXYQAHDPDNMFKVGDIVQLRKTRPISKNKTFLAVPVPARNRK 472
           VVRLAPHP           YQAHDPDN FKVGD+VQL K+RPISK KTF+A+PVP RNR 
Sbjct: 67  VVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDVVQLEKSRPISKTKTFVAIPVPNRNRA 126

Query: 471 STDDESPYGGDLPIPL 424
            + + +   G+L IPL
Sbjct: 127 KSQEAA--AGELEIPL 140


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