BLASTX nr result
ID: Glycyrrhiza24_contig00004160
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza24_contig00004160
(338 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containi... 154 7e-36
ref|XP_003637572.1| Pentatricopeptide repeat-containing protein ... 131 5e-29
ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containi... 128 5e-28
emb|CBI40338.3| unnamed protein product [Vitis vinifera] 128 5e-28
emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera] 128 5e-28
>ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Glycine max]
Length = 986
Score = 154 bits (389), Expect = 7e-36
Identities = 78/112 (69%), Positives = 89/112 (79%)
Frame = +1
Query: 1 AVVSMYGKCRALRHARYMFDDMCSRGIQDLVSWNAIVSAYSQASDANTAISLFREMMVPV 180
AVVSMYGKC ALRHA MFDD+C RGIQDLVSWN++VSAY ASDANTA++LF +M
Sbjct: 299 AVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKM---- 354
Query: 181 ARSHRVFISPDAVSLVNILPACGSLGAWLHGKQVHGFAIRSGFVGDVFVGNA 336
+ R +SPD +SLVNILPAC SL A L G+QVHGF+IRSG V DVFVGNA
Sbjct: 355 --TTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNA 404
Score = 69.3 bits (168), Expect = 3e-10
Identities = 37/101 (36%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Frame = +1
Query: 1 AVVSMYGKCRALRHARYMFDDMCSRGIQ-DLVSWNAIVSAYSQASDANTAISLFREMMVP 177
A+V+ Y + L HA +F+ M I+ D+V+W A+++ Y+Q A+ +FR+M
Sbjct: 435 AMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDC 494
Query: 178 VARSHRVFISPDAVSLVNILPACGSLGAWLHGKQVHGFAIR 300
+R P+ V+LV++L AC S+GA LHGK+ H +AI+
Sbjct: 495 GSR-------PNVVTLVSLLSACVSVGALLHGKETHCYAIK 528
Score = 65.1 bits (157), Expect = 6e-09
Identities = 41/112 (36%), Positives = 62/112 (55%), Gaps = 2/112 (1%)
Frame = +1
Query: 4 VVSMYGKCRALRHARYMFDDMCSRGIQDLVSWNAIVSAYSQASDANTAISLFREMMVPVA 183
++ MY KC++ AR MFD + + +D+V+W ++ Y+Q DAN A+ LF M +
Sbjct: 549 LIDMYAKCQSTEVARKMFDSVSPKD-RDVVTWTVMIGGYAQHGDANNALQLFSGMF-KMD 606
Query: 184 RSHRVFISPDAVSLVNILPACGSLGAWLHGKQVHGFAIRSGFVGDV--FVGN 333
+S I P+ +L L AC L A G+QVH + +R+ F G V FV N
Sbjct: 607 KS----IKPNDFTLSCALVACARLAALRFGRQVHAYVLRN-FYGSVMLFVAN 653
>ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503507|gb|AES84710.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 833
Score = 131 bits (330), Expect = 5e-29
Identities = 67/112 (59%), Positives = 79/112 (70%)
Frame = +1
Query: 1 AVVSMYGKCRALRHARYMFDDMCSRGIQDLVSWNAIVSAYSQASDANTAISLFREMMVPV 180
AV+SMYGKC+A+ HAR +FD++C RGI D V+WN+IVS YS N A+SLFREM V
Sbjct: 166 AVISMYGKCKAVVHARKVFDELCYRGICDSVTWNSIVSVYSHCFVPNVAVSLFREMTVGY 225
Query: 181 ARSHRVFISPDAVSLVNILPACGSLGAWLHGKQVHGFAIRSGFVGDVFVGNA 336
I PD V +VNILP CG LG L G+QVHGF +RSG V DVFVGNA
Sbjct: 226 G------ILPDTVGVVNILPVCGYLGLGLCGRQVHGFCVRSGLVEDVFVGNA 271
Score = 73.2 bits (178), Expect = 2e-11
Identities = 40/113 (35%), Positives = 63/113 (55%), Gaps = 2/113 (1%)
Frame = +1
Query: 1 AVVSMYGKCRALRHARYMFDDMCSRGIQDLVSWNAIVSAYSQASDANTAISLFREMMVPV 180
A++ MY KC++L AR MFD++C + +D+V+W ++ Y+Q DAN A+ LF EM
Sbjct: 414 ALIDMYAKCKSLEVARAMFDEICPKD-RDVVTWTVMIGGYAQHGDANHALQLFSEMF--- 469
Query: 181 ARSHRVFISPDAVSLVNILPACGSLGAWLHGKQVHGFAIRSGFVGD--VFVGN 333
I P+ ++ +L AC L A GKQ+H + +R + +FV N
Sbjct: 470 --KIDNCIVPNDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVAN 520
Score = 62.4 bits (150), Expect = 4e-08
Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 28/128 (21%)
Frame = +1
Query: 1 AVVSMYGKCRALRHARYMFDDMCSRGIQDLVSWNAIVSAYSQASDANTAISLFREMMVPV 180
A+V MY KC + A +F+ M +D+V+WNA+V+ YSQ A+SLF +M
Sbjct: 271 ALVDMYAKCGKMEDANKVFERM---RFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEK 327
Query: 181 ARSHRVFIS----------------------------PDAVSLVNILPACGSLGAWLHGK 276
S V S P+ V+L+++L AC S+GA LHGK
Sbjct: 328 IESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGK 387
Query: 277 QVHGFAIR 300
+ H ++++
Sbjct: 388 ETHCYSVK 395
>ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Vitis vinifera]
Length = 852
Score = 128 bits (321), Expect = 5e-28
Identities = 63/111 (56%), Positives = 79/111 (71%)
Frame = +1
Query: 4 VVSMYGKCRALRHARYMFDDMCSRGIQDLVSWNAIVSAYSQASDANTAISLFREMMVPVA 183
+VSMYG+C A +AR +FD+M RG+ DLVSWN+IV+AY Q D+ A+ +F M +
Sbjct: 167 LVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLG 226
Query: 184 RSHRVFISPDAVSLVNILPACGSLGAWLHGKQVHGFAIRSGFVGDVFVGNA 336
I PDAVSLVN+LPAC S+GAW GKQVHG+A+RSG DVFVGNA
Sbjct: 227 ------IRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNA 271
Score = 67.4 bits (163), Expect = 1e-09
Identities = 37/112 (33%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Frame = +1
Query: 1 AVVSMYGKCRALRHARYMFDDMCSRGIQDLVSWNAIVSAYSQASDANTAISLFREMMVPV 180
A++ MY KC++ + AR MFD + + + +V+W ++ +Q +AN A+ LF +M+ P
Sbjct: 414 ALIDMYSKCKSPKAARAMFDLIPPKD-RSVVTWTVLIGGNAQHGEANEALELFSQMLQPD 472
Query: 181 ARSHRVFISPDAVSLVNILPACGSLGAWLHGKQVHGFAIRSGFVGD-VFVGN 333
F+ P+A ++ L AC LGA G+Q+H + +R+ F +FV N
Sbjct: 473 N-----FVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVAN 519
>emb|CBI40338.3| unnamed protein product [Vitis vinifera]
Length = 487
Score = 128 bits (321), Expect = 5e-28
Identities = 63/111 (56%), Positives = 79/111 (71%)
Frame = +1
Query: 4 VVSMYGKCRALRHARYMFDDMCSRGIQDLVSWNAIVSAYSQASDANTAISLFREMMVPVA 183
+VSMYG+C A +AR +FD+M RG+ DLVSWN+IV+AY Q D+ A+ +F M +
Sbjct: 167 LVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLG 226
Query: 184 RSHRVFISPDAVSLVNILPACGSLGAWLHGKQVHGFAIRSGFVGDVFVGNA 336
I PDAVSLVN+LPAC S+GAW GKQVHG+A+RSG DVFVGNA
Sbjct: 227 ------IRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNA 271
Score = 73.9 bits (180), Expect = 1e-11
Identities = 38/100 (38%), Positives = 60/100 (60%)
Frame = +1
Query: 1 AVVSMYGKCRALRHARYMFDDMCSRGIQDLVSWNAIVSAYSQASDANTAISLFREMMVPV 180
AVV MY KC + A +F+ M ++D+VSWNA+V+ YSQ + A+ LF ++
Sbjct: 271 AVVDMYAKCGMMEEANKVFERM---KVKDVVSWNAMVTGYSQIGRFDDALGLFEKI---- 323
Query: 181 ARSHRVFISPDAVSLVNILPACGSLGAWLHGKQVHGFAIR 300
R ++ ++P+ V+LV++L C G LHGK+ H AI+
Sbjct: 324 -REEKIELNPNVVTLVSLLSGCALAGTLLHGKETHCHAIK 362
>emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
Length = 871
Score = 128 bits (321), Expect = 5e-28
Identities = 63/111 (56%), Positives = 79/111 (71%)
Frame = +1
Query: 4 VVSMYGKCRALRHARYMFDDMCSRGIQDLVSWNAIVSAYSQASDANTAISLFREMMVPVA 183
+VSMYG+C A +AR +FD+M RG+ DLVSWN+IV+AY Q D+ A+ +F M +
Sbjct: 186 LVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLG 245
Query: 184 RSHRVFISPDAVSLVNILPACGSLGAWLHGKQVHGFAIRSGFVGDVFVGNA 336
I PDAVSLVN+LPAC S+GAW GKQVHG+A+RSG DVFVGNA
Sbjct: 246 ------IRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNA 290
Score = 67.4 bits (163), Expect = 1e-09
Identities = 37/112 (33%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Frame = +1
Query: 1 AVVSMYGKCRALRHARYMFDDMCSRGIQDLVSWNAIVSAYSQASDANTAISLFREMMVPV 180
A++ MY KC++ + AR MFD + + + +V+W ++ +Q +AN A+ LF +M+ P
Sbjct: 433 ALIDMYSKCKSPKAARAMFDLIPPKD-RSVVTWTVLIGGNAQHGEANEALELFSQMLQPD 491
Query: 181 ARSHRVFISPDAVSLVNILPACGSLGAWLHGKQVHGFAIRSGFVGD-VFVGN 333
F+ P+A ++ L AC LGA G+Q+H + +R+ F +FV N
Sbjct: 492 N-----FVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVAN 538