BLASTX nr result

ID: Glycyrrhiza24_contig00004036 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00004036
         (638 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003550207.1| PREDICTED: NADH dehydrogenase [ubiquinone] 1...   123   3e-26
gb|AFK36327.1| unknown [Medicago truncatula]                          119   5e-25
ref|XP_004142812.1| PREDICTED: NADH dehydrogenase [ubiquinone] 1...   104   1e-20
ref|XP_002328810.1| predicted protein [Populus trichocarpa] gi|1...   103   3e-20
dbj|BAK07097.1| predicted protein [Hordeum vulgare subsp. vulgare]    100   4e-19

>ref|XP_003550207.1| PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex
           subunit 3-B [Glycine max] gi|255628585|gb|ACU14637.1|
           unknown [Glycine max]
          Length = 73

 Score =  123 bits (308), Expect = 3e-26
 Identities = 56/72 (77%), Positives = 63/72 (87%), Gaps = 3/72 (4%)
 Frame = -1

Query: 566 MGTGAGKHTGEFFRRRDAWRKHPMLGNQMRHATPGLGIALVAFGVYLVAEQAYNRINAPS 387
           MG+G+GKHTGEFFRRRDAWRKHPML NQ+RHATPGLGIA+VAFG+YLV EQ YNR+ AP 
Sbjct: 1   MGSGSGKHTGEFFRRRDAWRKHPMLTNQLRHATPGLGIAVVAFGIYLVGEQVYNRLYAPD 60

Query: 386 SH---HVKAGEH 360
            H   HVKAG+H
Sbjct: 61  PHSISHVKAGDH 72


>gb|AFK36327.1| unknown [Medicago truncatula]
          Length = 69

 Score =  119 bits (298), Expect = 5e-25
 Identities = 56/68 (82%), Positives = 61/68 (89%), Gaps = 2/68 (2%)
 Frame = -1

Query: 557 GAGKHTGEFFRRRDAWRKHPMLGNQMRHATPGLGIALVAFGVYLVAEQAYNRINAP--SS 384
           GAGK+T EFF+RRD WRKHPMLGNQMRHATPGLGIALVAFGVYLVAEQ YN+IN+   S 
Sbjct: 2   GAGKNTAEFFKRRDEWRKHPMLGNQMRHATPGLGIALVAFGVYLVAEQVYNKINSSSHSH 61

Query: 383 HHVKAGEH 360
           HHVKAG+H
Sbjct: 62  HHVKAGDH 69


>ref|XP_004142812.1| PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex
           subunit 3-B-like [Cucumis sativus]
          Length = 74

 Score =  104 bits (260), Expect = 1e-20
 Identities = 47/55 (85%), Positives = 49/55 (89%)
 Frame = -1

Query: 542 TGEFFRRRDAWRKHPMLGNQMRHATPGLGIALVAFGVYLVAEQAYNRINAPSSHH 378
           TGEFFRRRD WRKHPML NQ RHATPGLGIALVAFG+YLV EQ YNRIN+PSS H
Sbjct: 9   TGEFFRRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYNRINSPSSSH 63


>ref|XP_002328810.1| predicted protein [Populus trichocarpa] gi|118484462|gb|ABK94107.1|
           unknown [Populus trichocarpa]
           gi|118487969|gb|ABK95806.1| unknown [Populus
           trichocarpa] gi|222839108|gb|EEE77459.1| predicted
           protein [Populus trichocarpa]
          Length = 68

 Score =  103 bits (257), Expect = 3e-20
 Identities = 51/69 (73%), Positives = 53/69 (76%)
 Frame = -1

Query: 566 MGTGAGKHTGEFFRRRDAWRKHPMLGNQMRHATPGLGIALVAFGVYLVAEQAYNRINAPS 387
           MG   G  TGEFFRRRD WRKHPML NQ RHATPGLGIALVAFGVYLV EQ YN+I APS
Sbjct: 1   MGKPLGS-TGEFFRRRDEWRKHPMLTNQFRHATPGLGIALVAFGVYLVGEQVYNKIYAPS 59

Query: 386 SHHVKAGEH 360
           S H  +  H
Sbjct: 60  SDHSSSHSH 68


>dbj|BAK07097.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 78

 Score = 99.8 bits (247), Expect = 4e-19
 Identities = 48/71 (67%), Positives = 56/71 (78%), Gaps = 4/71 (5%)
 Frame = -1

Query: 578 SAEEMGTGAG--KHTGEFFRRRDAWRKHPMLGNQMRHATPGLGIALVAFGVYLVAEQAYN 405
           +AE M TG      TGEFFRRRD WRKHPM+GNQ+RHATPGLGIA+VAFG+YLV E AYN
Sbjct: 8   AAEAMATGGKGLNATGEFFRRRDEWRKHPMVGNQLRHATPGLGIAIVAFGIYLVGEAAYN 67

Query: 404 RINAPS--SHH 378
           R+  P+  +HH
Sbjct: 68  RLYRPAGDNHH 78


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