BLASTX nr result

ID: Glycyrrhiza24_contig00003997 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00003997
         (919 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003547928.1| PREDICTED: DNA-binding protein HEXBP-like [G...    88   3e-15
ref|XP_003520240.1| PREDICTED: DNA-binding protein HEXBP-like [G...    88   3e-15
dbj|BAJ95296.1| predicted protein [Hordeum vulgare subsp. vulgar...    63   1e-07
gb|ADN33944.1| cold-shock DNA-binding family protein [Cucumis me...    60   9e-07
ref|XP_004146143.1| PREDICTED: cold shock protein 1-like [Cucumi...    59   1e-06

>ref|XP_003547928.1| PREDICTED: DNA-binding protein HEXBP-like [Glycine max]
          Length = 250

 Score = 87.8 bits (216), Expect = 3e-15
 Identities = 44/80 (55%), Positives = 45/80 (56%)
 Frame = +3

Query: 159 HMARDCATSKVXXXXXXXXXXCFRCGEVGHMARDCXXXXXXXXXXXXXXXXXXXXXXXKS 338
           HMARDCAT K           CFRCGEVGH+ARDC                       KS
Sbjct: 175 HMARDCATGKGNIGGGSSGGGCFRCGEVGHLARDCGMEGGRYGDGGNSGGGGGG----KS 230

Query: 339 TCFNCGKPGHFARECVEASG 398
           TCFNCGKPGHFARECVEASG
Sbjct: 231 TCFNCGKPGHFARECVEASG 250


>ref|XP_003520240.1| PREDICTED: DNA-binding protein HEXBP-like [Glycine max]
          Length = 252

 Score = 87.8 bits (216), Expect = 3e-15
 Identities = 44/80 (55%), Positives = 45/80 (56%)
 Frame = +3

Query: 159 HMARDCATSKVXXXXXXXXXXCFRCGEVGHMARDCXXXXXXXXXXXXXXXXXXXXXXXKS 338
           HMARDCAT K           CFRCGEVGH+ARDC                       KS
Sbjct: 178 HMARDCATGKGNIGGGGSGGGCFRCGEVGHLARDCGMEGGRFGGGGGSGGGGG-----KS 232

Query: 339 TCFNCGKPGHFARECVEASG 398
           TCFNCGKPGHFARECVEASG
Sbjct: 233 TCFNCGKPGHFARECVEASG 252


>dbj|BAJ95296.1| predicted protein [Hordeum vulgare subsp. vulgare]
           gi|326507234|dbj|BAJ95694.1| predicted protein [Hordeum
           vulgare subsp. vulgare]
          Length = 264

 Score = 62.8 bits (151), Expect = 1e-07
 Identities = 29/80 (36%), Positives = 38/80 (47%)
 Frame = +3

Query: 159 HMARDCATSKVXXXXXXXXXXCFRCGEVGHMARDCXXXXXXXXXXXXXXXXXXXXXXXKS 338
           HMARDC+ +            C++CGE GH+ARDC                         
Sbjct: 152 HMARDCSVNGAAGGGGGGGGGCYKCGEQGHIARDCFNGGAGGGGGGYGGGGGGG-----G 206

Query: 339 TCFNCGKPGHFARECVEASG 398
           TC+NCG+PGH AR+C  +SG
Sbjct: 207 TCYNCGEPGHIARDCPTSSG 226


>gb|ADN33944.1| cold-shock DNA-binding family protein [Cucumis melo subsp. melo]
          Length = 272

 Score = 59.7 bits (143), Expect = 9e-07
 Identities = 32/80 (40%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +3

Query: 159 HMARDCATSKVXXXXXXXXXX-CFRCGEVGHMARDCXXXXXXXXXXXXXXXXXXXXXXXK 335
           H+ARDC                CF CGE GH+ARDC                        
Sbjct: 195 HLARDCNRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGG--S 252

Query: 336 STCFNCGKPGHFARECVEAS 395
           +TCFNCGK GHFAREC +AS
Sbjct: 253 NTCFNCGKSGHFARECPDAS 272


>ref|XP_004146143.1| PREDICTED: cold shock protein 1-like [Cucumis sativus]
          Length = 273

 Score = 59.3 bits (142), Expect = 1e-06
 Identities = 33/82 (40%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = +3

Query: 159 HMARDCATSKVXXXXXXXXXX--CFRCGEVGHMARDCXXXXXXXXXXXXXXXXXXXXXXX 332
           H+ARDC                 CF CGE GH+ARDC                       
Sbjct: 192 HLARDCNRGGAGGGSGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGGRFGGGGGGGG 251

Query: 333 KS-TCFNCGKPGHFARECVEAS 395
            S TCFNCGK GHFAREC +AS
Sbjct: 252 GSNTCFNCGKSGHFARECPDAS 273


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