BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00003965
         (5328 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II su...  2939   0.0  
ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II su...  2927   0.0  
ref|XP_003612256.1| DNA-directed RNA polymerase [Medicago trunca...  2895   0.0  
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...  2811   0.0  
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su...  2807   0.0  

>ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Glycine
            max]
          Length = 1827

 Score = 2939 bits (7619), Expect = 0.0
 Identities = 1466/1535 (95%), Positives = 1491/1535 (97%)
 Frame = -1

Query: 5139 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 4960
            MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 4959 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLNIMRCVCFNCSKILADEQDHK 4780
            DRK+KCETCTA+MAECPGHFGHLELAKPMFHIGFLKTVL IMRCVCFNCSKILADE DHK
Sbjct: 61   DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120

Query: 4779 FKQALRIRNPKNRLKKILDACKNKTKCDGGDEIDMPGQDGDEPVKKSRGGCGAQQPKITI 4600
            FKQALRIRNPKNRLKKILDACKNK+KC+GGDEID+PGQD DEPVKKSRGGCGAQQPKITI
Sbjct: 121  FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI 180

Query: 4599 DGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLSVLKRISDEDCQLLGLNPKYAR 4420
            +GMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVL VLKRISDEDCQLLGLNPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 4419 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 4240
            PDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300

Query: 4239 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4060
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 4059 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEHGPHPPPGKTGAKYIIR 3880
            TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVE+GPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 3879 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3700
            DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 3699 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 3520
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 3519 LLGCRKITKRDTFISKDVFMNTLMWWEDFDGKVPIPTILKPEPMWTGKQVFNLIIPKPIN 3340
            LLGCRKITKRDTFI+KDVFMN LMWWEDFDGKVP P ILKPEP+WTGKQVFNLIIPK IN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN 600

Query: 3339 LIRYSSWHNESERGPITPGDTVVRIEXXXXXXXXXXXXXXXXXXGSLIHVIWEEVGPDAA 3160
            LIRYSSWH+ESERG ITPGDT+VRIE                  GSLIHVIWEEVGPDAA
Sbjct: 601  LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 3159 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMEVINQTISQAKEKVKQLIRDAHEKKL 2980
            RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTME INQTIS AKEKVKQLIR+A EKKL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQEKKL 720

Query: 2979 EAEPGRTMMESFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2800
            EAEPGRTMM+SFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 2799 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2620
            ACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 2619 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 2440
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900

Query: 2439 LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ 2260
            LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ
Sbjct: 901  LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 2259 LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 2080
            LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961  LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 1020

Query: 2079 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWLVGEIESRFLQSLVASG 1900
            GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEW+VGEIESRFLQSLVASG
Sbjct: 1021 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080

Query: 1899 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVFLK 1720
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSV+L+
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLR 1140

Query: 1719 PEVAKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIDEDVDFVKSYYEMPDEEV 1540
             +V KTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTII+ED DFVKSYYEMPDEEV
Sbjct: 1141 SDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDEEV 1200

Query: 1539 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1360
            ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1359 NDEGPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENEGFKP 1180
            NDE PKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDEN+GFKP
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQGFKP 1320

Query: 1179 HEEWMLDTEGVNLLAVMCHDDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1000
            +EEWMLDTEGVNLLAVMCH+DVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG
Sbjct: 1321 NEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380

Query: 999  SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 820
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1440

Query: 819  LRGVTENIMLGQLAPIGTGECGLLLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTP 640
            LRGVTENIMLGQLAPIGTGEC L LNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTP 1500

Query: 639  YHEGLMSPNYLLSPNLRLSPSTDAQFSPYVGGMAF 535
            YHEGLMSP+YLLSPNLRLSP++DAQFSPYVGGMAF
Sbjct: 1501 YHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAF 1535


>ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Glycine
            max]
          Length = 1827

 Score = 2927 bits (7587), Expect = 0.0
 Identities = 1461/1535 (95%), Positives = 1487/1535 (96%)
 Frame = -1

Query: 5139 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 4960
            MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 4959 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLNIMRCVCFNCSKILADEQDHK 4780
            DRK+KCETCTA+MAECPGHFGHLELAKPMFHIGFLKTVL IMRCVCFNCSKILADE DHK
Sbjct: 61   DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120

Query: 4779 FKQALRIRNPKNRLKKILDACKNKTKCDGGDEIDMPGQDGDEPVKKSRGGCGAQQPKITI 4600
            FKQALRIRNPKNRLKKILDACKNK+KC+GGDEID+PGQD +E VKKSRGGCGAQQPKITI
Sbjct: 121  FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTEESVKKSRGGCGAQQPKITI 180

Query: 4599 DGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLSVLKRISDEDCQLLGLNPKYAR 4420
            +GMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVL VLKRISDEDCQLLGLNPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 4419 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 4240
            PDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300

Query: 4239 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4060
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 4059 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEHGPHPPPGKTGAKYIIR 3880
            TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVE+GPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 3879 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3700
            DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 3699 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 3520
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 3519 LLGCRKITKRDTFISKDVFMNTLMWWEDFDGKVPIPTILKPEPMWTGKQVFNLIIPKPIN 3340
            LLGCRKITKRDTFISKDVFMN LMWWEDFDGKVP P ILKPEP+WTGKQVFNLIIPK IN
Sbjct: 541  LLGCRKITKRDTFISKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN 600

Query: 3339 LIRYSSWHNESERGPITPGDTVVRIEXXXXXXXXXXXXXXXXXXGSLIHVIWEEVGPDAA 3160
            LIRYSSWH+ESERG ITPGDT+VRIE                  G LIHVIWEEVGPDAA
Sbjct: 601  LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTYSGGLIHVIWEEVGPDAA 660

Query: 3159 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMEVINQTISQAKEKVKQLIRDAHEKKL 2980
            RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTME INQTIS AKEKVKQLIR+AHEKKL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAHEKKL 720

Query: 2979 EAEPGRTMMESFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2800
            EAEPGR+MM+SFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EAEPGRSMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 2799 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2620
            ACVGQQNVEGKRIP+GFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPYGFIDRTLPHFTKDDLGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 2619 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 2440
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE Q 
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIEKQM 900

Query: 2439 LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ 2260
            LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADR+Q
Sbjct: 901  LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRFQ 960

Query: 2259 LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 2080
            LATEIATTGDSSL LPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961  LATEIATTGDSSLFLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 1020

Query: 2079 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWLVGEIESRFLQSLVASG 1900
            GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEW+VGEIESRFLQSLVASG
Sbjct: 1021 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080

Query: 1899 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVFLK 1720
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSV+L+
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLR 1140

Query: 1719 PEVAKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIDEDVDFVKSYYEMPDEEV 1540
            P+V KTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTII+EDVDFVKSYYEMPDEEV
Sbjct: 1141 PDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200

Query: 1539 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1360
            ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1359 NDEGPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENEGFKP 1180
            NDE PKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDEN+GFKP
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQGFKP 1320

Query: 1179 HEEWMLDTEGVNLLAVMCHDDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1000
            +EEWMLDTEGVNLLAVMCH+DVD TRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG
Sbjct: 1321 NEEWMLDTEGVNLLAVMCHEDVDVTRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380

Query: 999  SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 820
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1440

Query: 819  LRGVTENIMLGQLAPIGTGECGLLLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTP 640
            LRGVTENIMLGQLAPIGTGEC L LNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTP 1500

Query: 639  YHEGLMSPNYLLSPNLRLSPSTDAQFSPYVGGMAF 535
            YHEGLMSP+YLLSPNLRLSP+TDAQFSPYVGGMAF
Sbjct: 1501 YHEGLMSPSYLLSPNLRLSPTTDAQFSPYVGGMAF 1535


>ref|XP_003612256.1| DNA-directed RNA polymerase [Medicago truncatula]
            gi|355513591|gb|AES95214.1| DNA-directed RNA polymerase
            [Medicago truncatula]
          Length = 1864

 Score = 2895 bits (7506), Expect = 0.0
 Identities = 1446/1553 (93%), Positives = 1485/1553 (95%), Gaps = 18/1553 (1%)
 Frame = -1

Query: 5139 MDIRFPFSPAEVAKVRMVQFGILSPDEI------RQMSVVQIEHGETTERGKPKVGGLSD 4978
            MDIRFPFSPAEVAKVRMVQFGILSPDEI      RQM+VVQIEHGETTERGKPK+GGLSD
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIVIFSILRQMAVVQIEHGETTERGKPKIGGLSD 60

Query: 4977 PRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLNIMRCVCFNCSKILA 4798
            PRLGTIDRKMKCETCTA+MAECPGHFG+LELAKPMFHIGFLKTVL+IMRCVCFNCSKILA
Sbjct: 61   PRLGTIDRKMKCETCTASMAECPGHFGYLELAKPMFHIGFLKTVLSIMRCVCFNCSKILA 120

Query: 4797 DE------------QDHKFKQALRIRNPKNRLKKILDACKNKTKCDGGDEIDMPGQDGDE 4654
            DE             DHKFKQA+RI+NPK+RL+KILDACKNKTKC+GGD+ID+P  D  E
Sbjct: 121  DEVLSRPFKPVLLINDHKFKQAMRIKNPKHRLRKILDACKNKTKCEGGDDIDLPEHDTKE 180

Query: 4653 PVKKSRGGCGAQQPKITIDGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLSVLK 4474
            P+KKSRGGCGAQQPKITI+GMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVL VLK
Sbjct: 181  PLKKSRGGCGAQQPKITIEGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLK 240

Query: 4473 RISDEDCQLLGLNPKYARPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRH 4294
            RISDEDCQLLGLNPKYARPDW+ILQVL        PSVMMDTSSRSEDDLTHQLAMIIRH
Sbjct: 241  RISDEDCQLLGLNPKYARPDWLILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRH 300

Query: 4293 NENLKRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAK 4114
            NENLKRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAK
Sbjct: 301  NENLKRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAK 360

Query: 4113 EGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELV 3934
            EGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELV
Sbjct: 361  EGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELV 420

Query: 3933 EHGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPS 3754
            E+GPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPS
Sbjct: 421  EYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPS 480

Query: 3753 LHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPK 3574
            LHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPK
Sbjct: 481  LHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPK 540

Query: 3573 CIVSPQSNRPVMGIVQDTLLGCRKITKRDTFISKDVFMNTLMWWEDFDGKVPIPTILKPE 3394
            CIVSPQ+NRPVMGIVQD+LLGCRKITKRDTFISKDVFMN LMWWEDFDGKVP PTILKPE
Sbjct: 541  CIVSPQANRPVMGIVQDSLLGCRKITKRDTFISKDVFMNILMWWEDFDGKVPAPTILKPE 600

Query: 3393 PMWTGKQVFNLIIPKPINLIRYSSWHNESERGPITPGDTVVRIEXXXXXXXXXXXXXXXX 3214
            P+WTGKQVFNLIIPK INLIRYSSWHNE+ERGPITPGDT+VRIE                
Sbjct: 601  PLWTGKQVFNLIIPKQINLIRYSSWHNENERGPITPGDTMVRIEKGELLTGTLCKKTLGT 660

Query: 3213 XXGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMEVINQTIS 3034
              GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ AFSIGIGDTIADASTME INQTIS
Sbjct: 661  GTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMETINQTIS 720

Query: 3033 QAKEKVKQLIRDAHEKKLEAEPGRTMMESFENRVNQTLNRARDDAGNSAQKSLSESNNLK 2854
            QAK+KVKQLIR+A EKKLEAEPGRTMM+SFENRVNQTLNRARDDAGNSAQKSLSESNNLK
Sbjct: 721  QAKDKVKQLIREAQEKKLEAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLK 780

Query: 2853 AMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSY 2674
            AMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSY
Sbjct: 781  AMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSY 840

Query: 2673 LRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVI 2494
            LRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVI
Sbjct: 841  LRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVI 900

Query: 2493 QFLYGEDGMDAVWIETQKLDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIRE 2314
            QFLYGEDGMDAVWIETQKLDSLKMKKT+FDR FRYEFDDENWKPTYMLEEPVEDLKTIRE
Sbjct: 901  QFLYGEDGMDAVWIETQKLDSLKMKKTDFDRAFRYEFDDENWKPTYMLEEPVEDLKTIRE 960

Query: 2313 FRNVFEAEVQKLEADRYQLATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHP 2134
            FRNVFEAEVQKL+ADR QLATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHP
Sbjct: 961  FRNVFEAEVQKLDADRVQLATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHP 1020

Query: 2133 MEIVEAIDKLQERLKVVPGEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFE 1954
            MEIVEAIDKLQERL+VVPGEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFE
Sbjct: 1021 MEIVEAIDKLQERLRVVPGEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFE 1080

Query: 1953 WLVGEIESRFLQSLVASGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1774
            W+VGEIESRFLQSLVASGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE
Sbjct: 1081 WVVGEIESRFLQSLVASGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1140

Query: 1773 IINVAKRIKTPSLSVFLKPEVAKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTII 1594
            IINVAKRIKTPSLSV+LKPEV KTKERAK+VQCALEYTTLRSVTQATEVWYDPDPM TII
Sbjct: 1141 IINVAKRIKTPSLSVYLKPEVCKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMGTII 1200

Query: 1593 DEDVDFVKSYYEMPDEEVALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT 1414
            +EDVDFVKSYYEMPDEEVAL+KISPWLLRIELNREMMVDKKLSMADIAEKIN EFD DLT
Sbjct: 1201 EEDVDFVKSYYEMPDEEVALDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDGDLT 1260

Query: 1413 CIFNDDNAEKLILRIRIMNDEGPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKV 1234
            CIFNDDNAEKLILRIRIMNDE PKG+IQDESAEDDVFLKKIESNMLTEMTLRGIPDINKV
Sbjct: 1261 CIFNDDNAEKLILRIRIMNDEAPKGDIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKV 1320

Query: 1233 FIKNTKVQKFDENEGFKPHEEWMLDTEGVNLLAVMCHDDVDATRTTSNHLIEVIEVLGIE 1054
            FIKNTK+QKFDENEGFKPHEEWMLDTEGVNLLAVMCH+DVDA RTTSNHLIEVIEVLGIE
Sbjct: 1321 FIKNTKIQKFDENEGFKPHEEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIE 1380

Query: 1053 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 874
            AVRR+LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRN+TGPMMRCSF
Sbjct: 1381 AVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNETGPMMRCSF 1440

Query: 873  EETVDILLDAAVYAETDYLRGVTENIMLGQLAPIGTGECGLLLNDEMLKNAIELQLPSYM 694
            EETVDILLDAAVYAETD+LRGVTENIMLGQLAPIGTGEC LLLNDEMLKNAIELQLPSYM
Sbjct: 1441 EETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGECALLLNDEMLKNAIELQLPSYM 1500

Query: 693  DGLDFGMTPARSPISGTPYHEGLMSPNYLLSPNLRLSPSTDAQFSPYVGGMAF 535
            +GLDFGMTP RSPIS TPYHEGLMSPNYLLSPNLRLSPS DAQFSPYVGGMAF
Sbjct: 1501 EGLDFGMTPGRSPISATPYHEGLMSPNYLLSPNLRLSPSNDAQFSPYVGGMAF 1553


>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
            vinifera]
          Length = 1848

 Score = 2811 bits (7287), Expect = 0.0
 Identities = 1390/1535 (90%), Positives = 1458/1535 (94%)
 Frame = -1

Query: 5139 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 4960
            MD+RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1    MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60

Query: 4959 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLNIMRCVCFNCSKILADEQDHK 4780
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGF+KTVL+IMRCVCFNCSKILADE+DHK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 4779 FKQALRIRNPKNRLKKILDACKNKTKCDGGDEIDMPGQDGDEPVKKSRGGCGAQQPKITI 4600
            FKQA +IRNPKNRLKKILDACKNK+KC+GGDEI+    D DEPVKKSRGGCGAQQPK+TI
Sbjct: 121  FKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALDSDEPVKKSRGGCGAQQPKLTI 180

Query: 4599 DGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLSVLKRISDEDCQLLGLNPKYAR 4420
            +GMKMIAEYK QRKK+DD EQLPEPVERKQ LSAERVL+VLKRISDEDC LLGLNPKYAR
Sbjct: 181  EGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLNPKYAR 240

Query: 4419 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 4240
            PDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300

Query: 4239 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4060
            EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 4059 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEHGPHPPPGKTGAKYIIR 3880
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVE+GPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 3879 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3700
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 3699 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 3520
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 3519 LLGCRKITKRDTFISKDVFMNTLMWWEDFDGKVPIPTILKPEPMWTGKQVFNLIIPKPIN 3340
            LLGCRKITKRDTFI KDVFMN LMWWEDFDGK+P P ILKP P+WTGKQVFNLIIPK IN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 600

Query: 3339 LIRYSSWHNESERGPITPGDTVVRIEXXXXXXXXXXXXXXXXXXGSLIHVIWEEVGPDAA 3160
            L+R S+WH+ESE G ITPGDT VRIE                  GSLIHVIWEEVGPDAA
Sbjct: 601  LLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 3159 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMEVINQTISQAKEKVKQLIRDAHEKKL 2980
            RKFLGHTQWLVNYWLLQN FSIGIGDTIADA+TME IN+TIS+AK +VK+LIR A E++L
Sbjct: 661  RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQL 720

Query: 2979 EAEPGRTMMESFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2800
            EAEPGRTMMESFENRVNQ LN+ARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 2799 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2620
            ACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 2619 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 2440
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900

Query: 2439 LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ 2260
            LDSLKMKK EFDRVF+YE DDENW P+YML E VEDLKTIREFRNVF+AEVQKLEADR+Q
Sbjct: 901  LDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 960

Query: 2259 LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 2080
            L TEIATTGD+S P+PVNLKRLIWNAQKTFKVD RRPSDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961  LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 1020

Query: 2079 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWLVGEIESRFLQSLVASG 1900
            G+DL+S EAQKNATL FNILLRSTFASKRVL+EYRL+REAFEW++GEIESRFLQSLVA G
Sbjct: 1021 GDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1899 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVFLK 1720
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140

Query: 1719 PEVAKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIDEDVDFVKSYYEMPDEEV 1540
            P+V+KTKERAK+VQCALEYTTLRSVTQATEVWYDPDPMSTII+EDVDFVKSYYEMPDEEV
Sbjct: 1141 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200

Query: 1539 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1360
            A EKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1359 NDEGPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENEGFKP 1180
            NDE PKGE+QDESAEDDVFLKKIESNMLTEM LRGIPDINKVFIK+ KV KFDE+EGFKP
Sbjct: 1261 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEGFKP 1320

Query: 1179 HEEWMLDTEGVNLLAVMCHDDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1000
              EWMLDTEGVNLLAVMCH+DVDA RTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 999  SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 820
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDF 1440

Query: 819  LRGVTENIMLGQLAPIGTGECGLLLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTP 640
            LRGVTENIMLGQLAPIGTG+C L LND+ML++AIELQLPSYM+GLDFGMTP+RSPI+GTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYMEGLDFGMTPSRSPITGTP 1500

Query: 639  YHEGLMSPNYLLSPNLRLSPSTDAQFSPYVGGMAF 535
            YH+G+MSPNYLLSPNLRLSP TDAQFSPYVGGMAF
Sbjct: 1501 YHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAF 1535


>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
            sativus]
          Length = 1853

 Score = 2807 bits (7276), Expect = 0.0
 Identities = 1393/1535 (90%), Positives = 1453/1535 (94%)
 Frame = -1

Query: 5139 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 4960
            MD+RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKV GLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 4959 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLNIMRCVCFNCSKILADEQDHK 4780
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGF+KTVL IMR VCFNCSKIL DE+D K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 4779 FKQALRIRNPKNRLKKILDACKNKTKCDGGDEIDMPGQDGDEPVKKSRGGCGAQQPKITI 4600
            FKQALRI+NPKNRL+KILDACKNKTKC+GGDEID+ GQD D+PVKKSRGGCGAQQPKI+I
Sbjct: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180

Query: 4599 DGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLSVLKRISDEDCQLLGLNPKYAR 4420
            +GMKM AEYKAQRKK+DD EQLPEPVERKQTL+AERVL +LKRI+DEDC+LLGLNPKYAR
Sbjct: 181  EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240

Query: 4419 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 4240
            PDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNGSPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 4239 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4060
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 4059 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEHGPHPPPGKTGAKYIIR 3880
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVE+GPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 3879 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3700
            DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 3699 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 3520
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 3519 LLGCRKITKRDTFISKDVFMNTLMWWEDFDGKVPIPTILKPEPMWTGKQVFNLIIPKPIN 3340
            LLGCRKITKRDTFI+KDVFMNTLMWWEDFDGK+P P ILKP+P+WTGKQVFNLIIPK IN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 3339 LIRYSSWHNESERGPITPGDTVVRIEXXXXXXXXXXXXXXXXXXGSLIHVIWEEVGPDAA 3160
            L R S+WH+ESE G ITPGDT VRIE                  GSLIHVIWEEVGPDAA
Sbjct: 601  LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 3159 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMEVINQTISQAKEKVKQLIRDAHEKKL 2980
            RKFLGHTQWLVNYWLLQNAFSIGIGDTIADA+TME IN+TIS AK +VK LI+ A E+ L
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720

Query: 2979 EAEPGRTMMESFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2800
            E EPGRTMM+SFEN+VNQ LN+ARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 2799 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2620
            ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 2619 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 2440
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+QK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 2439 LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ 2260
            LDSLKMKK EF+R+FRYEF+DENWKP YML E VEDLKTIREFRNVFEAEVQKLEADRYQ
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 2259 LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 2080
            L TEIATTG++S P+PVNLKRLI NAQKTFK+DFRR SDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 2079 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWLVGEIESRFLQSLVASG 1900
            GED LS EAQKNATL FNILLRSTFASKRVL+EYRL+REAFEW++GEIESRFLQSLVA G
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1899 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVFLK 1720
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1719 PEVAKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIDEDVDFVKSYYEMPDEEV 1540
            PE  KTKERAK+VQCALEYTTLRSVTQATEVWYDPDPMSTII+ED+DFVKSYYEMPDEE+
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200

Query: 1539 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1360
            A EKISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1359 NDEGPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENEGFKP 1180
            NDE PKGE+ DESAEDDVFLKKIESNMLTEM LRGIPDINKVFIK  KV KFDENEGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320

Query: 1179 HEEWMLDTEGVNLLAVMCHDDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1000
              EWMLDTEGVNLLAVM H+DVDA RTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 999  SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 820
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 819  LRGVTENIMLGQLAPIGTGECGLLLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTP 640
            LRGVTENIMLGQLAPIGTG C L LNDEMLKNAIELQLPSY+DGLDFGMTP+RSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500

Query: 639  YHEGLMSPNYLLSPNLRLSPSTDAQFSPYVGGMAF 535
            YHEG+MSPNYLLSPNLRLSP +DAQFSPYVGGMAF
Sbjct: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535