BLASTX nr result
ID: Glycyrrhiza24_contig00003843
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza24_contig00003843
(1800 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor rpoD ... 547 0.0
ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-... 535 0.0
ref|XP_003590454.1| RNA polymerase sigma factor [Medicago trunca... 519 0.0
ref|XP_003625673.1| RNA polymerase sigma factor rpoD [Medicago t... 418 e-159
ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ... 367 e-146
>ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor rpoD [Glycine max]
Length = 574
Score = 547 bits (1409), Expect(2) = 0.0
Identities = 283/392 (72%), Positives = 318/392 (81%), Gaps = 1/392 (0%)
Frame = +2
Query: 2 FPTSVLLQEQRDDYKPLLHISKEDKTCQAILNTRQMDMVSVHEENNTVNADQEVHDFRQH 181
FP SVLLQEQRD+Y+PLLH+SKEDKT QA+L+TRQMD V VHEENNT NADQ V DFR+H
Sbjct: 56 FPASVLLQEQRDEYRPLLHMSKEDKTSQAMLSTRQMDTVMVHEENNTENADQVVLDFRKH 115
Query: 182 LHLWPRLQNLLTSSQTGEIDASSTLQCVTLDTERPADSLQCNAVSLARKTLSPSKQAASV 361
LH WP LQNLL SSQTGEI ASSTLQ V+ D +R + +QCN VSLA+K LS SKQ +SV
Sbjct: 116 LHYWPHLQNLLASSQTGEISASSTLQQVSSDLDRHTNGVQCNRVSLAKKALSTSKQGSSV 175
Query: 362 AEDLKSIKADEDTDDSIPFGLASVGLADPSLGSNKTVRSTRLKERRSKQRKVPKSKVKDD 541
EDLKSIKAD DDSIPFGLAS GLADPS+G NKTVRSTRL ERRSKQRKVPKSKV DD
Sbjct: 176 VEDLKSIKAD---DDSIPFGLASTGLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDD 232
Query: 542 ETYLARKDDAQKRLHVEKKINEEFGQKDPLRLFLWSQETK-LLTPEQESQLIARIQDLFK 718
ETYLARKDDA ++L VEKK NEE Q DPL FL ETK LLT EQESQLI++IQDL +
Sbjct: 233 ETYLARKDDAHEKLRVEKKKNEELDQNDPLCFFLRGPETKQLLTLEQESQLISQIQDLLR 292
Query: 719 LEELKTSLQSQFGREPTVDEWAESAGLNCQTLQTQLRCGNRSREKLVQANLRLVHHVAKN 898
LEE+KT LQSQFGREPT+ EWAE GLNC+ L QLR G+RSREKL+QANLR+V HVAK+
Sbjct: 293 LEEVKTKLQSQFGREPTMAEWAEGVGLNCRMLHAQLRSGSRSREKLIQANLRMVVHVAKS 352
Query: 899 YXXXXXXXXXXXXXXSMGLLKSVKKFKPQAGCRFGSYAYWWIRQAIRKAIFHHSKTIRLP 1078
Y SMGL+KSV+KF P G RFG+YA+WWIRQAIRKA+F HS+TIRLP
Sbjct: 353 YQGRGLSLQDLLQEGSMGLMKSVEKFNPLVGSRFGNYAFWWIRQAIRKAVFRHSRTIRLP 412
Query: 1079 EKVYTQFGKILEAKKLYIQEGNLHPSKEELAR 1174
EKV+ GK++EAKKLYIQEGNLHP+KEELAR
Sbjct: 413 EKVFILLGKVMEAKKLYIQEGNLHPTKEELAR 444
Score = 218 bits (555), Expect(2) = 0.0
Identities = 109/130 (83%), Positives = 120/130 (92%)
Frame = +3
Query: 1221 KEELARRVGVTVEKIDSLLFAARIPISMQQTVWAEQNTTFQEITADTAIESPDTSVSKQL 1400
KEELARRVGVTVEKID LLF+ARIPISMQQTVWA+QNTTFQEITAD +E+ D SV KQL
Sbjct: 439 KEELARRVGVTVEKIDKLLFSARIPISMQQTVWADQNTTFQEITADPTVEATDVSVEKQL 498
Query: 1401 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSRERVRQLEIRAFHKLK 1580
MR+HVLN+LS L PKERRIIRLR+GFEDGEQKSLSE+G+IFGLS+ERVRQLEIRA +KLK
Sbjct: 499 MRQHVLNVLSILHPKERRIIRLRYGFEDGEQKSLSEIGDIFGLSKERVRQLEIRALYKLK 558
Query: 1581 KCLVSQGLDA 1610
KCLV QGLDA
Sbjct: 559 KCLVKQGLDA 568
>ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 571
Score = 535 bits (1379), Expect(2) = 0.0
Identities = 278/392 (70%), Positives = 319/392 (81%), Gaps = 1/392 (0%)
Frame = +2
Query: 2 FPTSVLLQEQRDDYKPLLHISKEDKTCQAILNTRQMDMVSVHEENNTVNADQEVHDFRQH 181
FP SVLL EQRD+Y+PLLH+SKEDKT QA+L+TRQMD V+VHEENNT NADQ V DFR+H
Sbjct: 57 FPASVLLPEQRDEYRPLLHMSKEDKTSQAMLSTRQMDTVTVHEENNTENADQVVLDFRKH 116
Query: 182 LHLWPRLQNLLTSSQTGEIDASSTLQCVTLDTERPADSLQCNAVSLARKTLSPSKQAASV 361
LH WP LQ LTSSQ GE+ ASSTL+ V++D ER + +Q N VSLA+K LS SKQ +SV
Sbjct: 117 LHHWPNLQ--LTSSQIGEVAASSTLEHVSVDLERRPNGVQFNGVSLAKKALSTSKQESSV 174
Query: 362 AEDLKSIKADEDTDDSIPFGLASVGLADPSLGSNKTVRSTRLKERRSKQRKVPKSKVKDD 541
EDLKSIKAD+ +PF LAS LADPS+G NKTVRSTRL ERRSKQRKVPKSKV DD
Sbjct: 175 VEDLKSIKADD-----VPFSLASTSLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDD 229
Query: 542 ETYLARKDDAQKRLHVEKKINEEFGQKDPLRLFLWSQETK-LLTPEQESQLIARIQDLFK 718
ETYLARKDDAQ++L EKK NEE Q DPLRLFLW ETK LLT EQESQLI++IQDL +
Sbjct: 230 ETYLARKDDAQEKLRAEKKKNEELDQDDPLRLFLWGPETKQLLTLEQESQLISQIQDLLR 289
Query: 719 LEELKTSLQSQFGREPTVDEWAESAGLNCQTLQTQLRCGNRSREKLVQANLRLVHHVAKN 898
LEE+KT+LQSQFGREPT+ EWAE AGLNC+ LQ+QL GNRSREKL+QANLR+V HVAK+
Sbjct: 290 LEEVKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSGNRSREKLIQANLRMVVHVAKS 349
Query: 899 YXXXXXXXXXXXXXXSMGLLKSVKKFKPQAGCRFGSYAYWWIRQAIRKAIFHHSKTIRLP 1078
Y SMGL+KSV+KF P AG RFG+YA+WWIRQAIRKA+F HS+TIRLP
Sbjct: 350 YQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLP 409
Query: 1079 EKVYTQFGKILEAKKLYIQEGNLHPSKEELAR 1174
EKV+ GK++EAKKLYIQEGNLHP+KEELAR
Sbjct: 410 EKVFILLGKVMEAKKLYIQEGNLHPTKEELAR 441
Score = 219 bits (557), Expect(2) = 0.0
Identities = 109/130 (83%), Positives = 120/130 (92%)
Frame = +3
Query: 1221 KEELARRVGVTVEKIDSLLFAARIPISMQQTVWAEQNTTFQEITADTAIESPDTSVSKQL 1400
KEELARRVGVTVEKID LLF+ARIPISMQQTVWA+QNTTFQEITAD +E+ D +V KQL
Sbjct: 436 KEELARRVGVTVEKIDKLLFSARIPISMQQTVWADQNTTFQEITADPTVEATDVTVEKQL 495
Query: 1401 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSRERVRQLEIRAFHKLK 1580
MRRHVLN+LS L PKERRIIRLR+GFEDGEQKSLSE+G+IFGLS+ERVRQLEIRA +KLK
Sbjct: 496 MRRHVLNVLSVLHPKERRIIRLRYGFEDGEQKSLSEIGDIFGLSKERVRQLEIRALYKLK 555
Query: 1581 KCLVSQGLDA 1610
KCLV QGLDA
Sbjct: 556 KCLVKQGLDA 565
>ref|XP_003590454.1| RNA polymerase sigma factor [Medicago truncatula]
gi|355479502|gb|AES60705.1| RNA polymerase sigma factor
[Medicago truncatula]
Length = 567
Score = 519 bits (1336), Expect(2) = 0.0
Identities = 273/398 (68%), Positives = 316/398 (79%), Gaps = 7/398 (1%)
Frame = +2
Query: 2 FPTSVLLQEQRDDYKPLLHISKEDKTCQAILNTRQMDMVSVHEENNTVNADQEVHDFRQH 181
FPTSVLLQEQ D+Y+PLLHISK+DKTCQA LNTRQMDMVSV E+N+T N DQ DFRQH
Sbjct: 55 FPTSVLLQEQCDEYRPLLHISKKDKTCQATLNTRQMDMVSVQEKNDTSNTDQVARDFRQH 114
Query: 182 LHLWPRLQNLLTSSQTGEIDASSTLQCVTLDTERPADSLQCNAVSLARKTLSPSKQAASV 361
LHL PRL+NLLTSSQTGE+D SSTLQ ADSLQCNAVSL SKQAASV
Sbjct: 115 LHLLPRLENLLTSSQTGEMDGSSTLQ--------HADSLQCNAVSL-------SKQAASV 159
Query: 362 AEDLKSIKADEDTDDSIPFGL------ASVGLADPSLGSNKTVRSTRLKERRSKQRKVPK 523
AEDL SIKADED D+SIPFGL AS A+P LG NKTVRSTRL+ERR+K+RKVPK
Sbjct: 160 AEDLISIKADEDADNSIPFGLVPPSCLASSSSAEPLLGGNKTVRSTRLRERRAKERKVPK 219
Query: 524 SKVKDDETYLARKDDAQKRLHVEKKINEEFGQKDPLRLFLWSQETK-LLTPEQESQLIAR 700
KVKD ETYL KD A+++L V+KKI++ Q DPL FL S E+K LLT EQESQL+ +
Sbjct: 220 LKVKDKETYLDGKDAAEEKLQVQKKISKGMNQSDPLNKFLQSPESKQLLTSEQESQLVVQ 279
Query: 701 IQDLFKLEELKTSLQSQFGREPTVDEWAESAGLNCQTLQTQLRCGNRSREKLVQANLRLV 880
IQ+L +LE+LKTSLQSQFGREPT+ EWAE AGLNC+ ++ QLRCGNRSREKL+QANLRLV
Sbjct: 280 IQELLRLEDLKTSLQSQFGREPTMAEWAEGAGLNCRKMKAQLRCGNRSREKLIQANLRLV 339
Query: 881 HHVAKNYXXXXXXXXXXXXXXSMGLLKSVKKFKPQAGCRFGSYAYWWIRQAIRKAIFHHS 1060
H++AK+Y S GL+KS+KKFK QAGCRF SYAYWWI+QAIRKAI++HS
Sbjct: 340 HYIAKSYQGRGLSIEDLLQEGSTGLIKSIKKFKTQAGCRFASYAYWWIKQAIRKAIYNHS 399
Query: 1061 KTIRLPEKVYTQFGKILEAKKLYIQEGNLHPSKEELAR 1174
+TIRLPEKVY + K+LEAKKLY +EGNL+P+KEELAR
Sbjct: 400 RTIRLPEKVYNKLSKVLEAKKLYKEEGNLNPTKEELAR 437
Score = 202 bits (515), Expect(2) = 0.0
Identities = 104/130 (80%), Positives = 117/130 (90%)
Frame = +3
Query: 1221 KEELARRVGVTVEKIDSLLFAARIPISMQQTVWAEQNTTFQEITADTAIESPDTSVSKQL 1400
KEELARRVG++ +K+D LLF ARIPISMQ TV +E +TTFQEITAD AIESP+ SV+KQL
Sbjct: 432 KEELARRVGISPDKVDRLLFVARIPISMQNTVGSETDTTFQEITADCAIESPNMSVAKQL 491
Query: 1401 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSRERVRQLEIRAFHKLK 1580
MRRHVLN+L+ LRPKERRIIRLRFGFEDGE+KSLSE+GEIFGLSRERVRQLE RA +KLK
Sbjct: 492 MRRHVLNVLNILRPKERRIIRLRFGFEDGEEKSLSEIGEIFGLSRERVRQLESRALYKLK 551
Query: 1581 KCLVSQGLDA 1610
K LV QGLDA
Sbjct: 552 KYLVGQGLDA 561
>ref|XP_003625673.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355500688|gb|AES81891.1| RNA polymerase sigma factor
rpoD [Medicago truncatula]
Length = 557
Score = 418 bits (1075), Expect(2) = e-159
Identities = 231/399 (57%), Positives = 281/399 (70%), Gaps = 8/399 (2%)
Frame = +2
Query: 2 FPTSVLLQEQRDDYKPLLHISKED-KTCQAILNTRQMDMVSVHEENNTVNADQE------ 160
FPTSVLLQE RD+YKPLLH ED K QA LNTR DM S+ E+ T + D +
Sbjct: 37 FPTSVLLQEHRDEYKPLLHTCNEDNKPPQATLNTRVTDMTSICEKIITGDGDGDGHVDVS 96
Query: 161 VHDFRQHLHLWPRLQNLLTSSQTGEIDASSTLQCVTLDTERPADSLQCNAVSLARKTLSP 340
VH+ LHL LQNLL SS + +SS+ + T PAD Q +A++LA++ LS
Sbjct: 97 VHNCMHQLHLRCHLQNLLASSPEEDFVSSSSSSSSS-STMLPADGFQWDALTLAKQALSA 155
Query: 341 SKQAASVAEDLKSIKADEDTDDSIPFGLASVGLADPSLGSNKTVRSTRLKERRSKQRKVP 520
SKQAA+VA++LK +K D+D DS+P +GLAD SLG NK VRS RLKERRSKQRKV
Sbjct: 156 SKQAAAVAQELKLVKIDDD--DSLP-----LGLADSSLGKNKIVRSIRLKERRSKQRKVS 208
Query: 521 KSKVKDDETYLARKDDAQKRLHVEKKINEEFGQKDPLRLFLWSQETK-LLTPEQESQLIA 697
SKV DDE YL +K + Q+RL +EKK+ E LRLFLWS ETK LL+ E+ESQLIA
Sbjct: 209 NSKVLDDEMYLTKKSNVQRRLRLEKKLKEGLDGNHALRLFLWSPETKQLLSIEEESQLIA 268
Query: 698 RIQDLFKLEELKTSLQSQFGREPTVDEWAESAGLNCQTLQTQLRCGNRSREKLVQANLRL 877
+IQDLFKL+E K LQS FGREPT+ EWA+ GL+C+ LQ +L CGNRS++KL+ ANLRL
Sbjct: 269 QIQDLFKLKETKIKLQSHFGREPTLAEWADGVGLSCRDLQKRLHCGNRSKDKLIHANLRL 328
Query: 878 VHHVAKNYXXXXXXXXXXXXXXSMGLLKSVKKFKPQAGCRFGSYAYWWIRQAIRKAIFHH 1057
V H+AK Y SMGL++SV+KFKPQAGCRF +YAYWWIRQ IR+A+F H
Sbjct: 329 VVHIAKYYQGRGLSLQDLLQEGSMGLMRSVEKFKPQAGCRFSTYAYWWIRQTIRRALFLH 388
Query: 1058 SKTIRLPEKVYTQFGKILEAKKLYIQEGNLHPSKEELAR 1174
SKTIRLPE Y GKI EAKK YI+EGNLHP+KEE+A+
Sbjct: 389 SKTIRLPENFYALLGKIAEAKKSYIKEGNLHPTKEEIAK 427
Score = 172 bits (435), Expect(2) = e-159
Identities = 80/130 (61%), Positives = 110/130 (84%)
Frame = +3
Query: 1221 KEELARRVGVTVEKIDSLLFAARIPISMQQTVWAEQNTTFQEITADTAIESPDTSVSKQL 1400
KEE+A+RVG+TV++++ LLF+ R P+SM++ VWA+ +TTFQEITAD++IE P+ V+KQL
Sbjct: 422 KEEIAKRVGITVDRLEMLLFSTRTPLSMERAVWADSDTTFQEITADSSIEIPNVCVAKQL 481
Query: 1401 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSRERVRQLEIRAFHKLK 1580
MR HV NLL L PKER+++RLRFG EDG +KSL+E+G++ G+ +ERVRQLE +A +KLK
Sbjct: 482 MRSHVRNLLGILPPKERKVLRLRFGIEDGYEKSLTEIGKVLGVCKERVRQLESQALNKLK 541
Query: 1581 KCLVSQGLDA 1610
+CLVSQ LDA
Sbjct: 542 QCLVSQQLDA 551
>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
Length = 572
Score = 367 bits (941), Expect(2) = e-146
Identities = 202/394 (51%), Positives = 265/394 (67%), Gaps = 4/394 (1%)
Frame = +2
Query: 2 FPTSVLLQEQRDDYKPLLHISKEDKTCQAILNTRQMDMVSVHEENNTVNADQEVHDFRQH 181
FPTSVLLQEQRD+Y+P K+++T QA L RQM++V +E N+ + +Q + +F +
Sbjct: 60 FPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQ 119
Query: 182 LHLWPRLQNLLTSSQTGEID--ASSTLQCVTLDTERPADSLQCNAVSLARKTLSPSKQAA 355
L L P L L SSQTGE +SS ++ +T D E D C+ ++LA+K LS SKQA
Sbjct: 120 LLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAV 179
Query: 356 SVAEDLKSIKADEDTDDSIPFGLASVGLADPSLG-SNKTVRSTRLKERRSKQRKVPKSKV 532
S+ E+ K + AD + S G ++ P+L KTVRSTRL ERRSK+R+ PK V
Sbjct: 180 SLYENAKLLGADLEDSPSPSLG----AISSPNLPLEEKTVRSTRLLERRSKKRRNPKVAV 235
Query: 533 KDDETYLARKDDAQKRLHVEKKINEEFGQKDPLRLFLWSQET-KLLTPEQESQLIARIQD 709
++ +R V++KINE + KDPLRLFLW ET KLLT ++ES+LI +IQ+
Sbjct: 236 HENH--------GSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQE 287
Query: 710 LFKLEELKTSLQSQFGREPTVDEWAESAGLNCQTLQTQLRCGNRSREKLVQANLRLVHHV 889
L +LEE+K LQS REPTV EWAE+ GL+CQ LQ+QL GNRSR+KL+ ANLR+V H+
Sbjct: 288 LMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHI 347
Query: 890 AKNYXXXXXXXXXXXXXXSMGLLKSVKKFKPQAGCRFGSYAYWWIRQAIRKAIFHHSKTI 1069
AK Y SMGL+ SV+KFKP AGCRF SYAYWWIRQA+RKAIF HS+TI
Sbjct: 348 AKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTI 407
Query: 1070 RLPEKVYTQFGKILEAKKLYIQEGNLHPSKEELA 1171
RLPE +Y+ GK+ EAK+L+IQEG+ P+KEE+A
Sbjct: 408 RLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIA 441
Score = 179 bits (453), Expect(2) = e-146
Identities = 87/130 (66%), Positives = 106/130 (81%)
Frame = +3
Query: 1221 KEELARRVGVTVEKIDSLLFAARIPISMQQTVWAEQNTTFQEITADTAIESPDTSVSKQL 1400
KEE+A RVG+T+EK+ LL R+P+SMQQ VWA+Q+TTFQE+TADT IE PD SV+KQL
Sbjct: 437 KEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQL 496
Query: 1401 MRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSRERVRQLEIRAFHKLK 1580
MR+HV NLL L PKERRIIRLRFG DG ++LSE+G +FG S+ERVRQLE RA HKLK
Sbjct: 497 MRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLK 556
Query: 1581 KCLVSQGLDA 1610
+CL S GL++
Sbjct: 557 QCLSSHGLES 566