BLASTX nr result
ID: Glycyrrhiza24_contig00003449
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza24_contig00003449
(4001 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta... 2239 0.0
ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II su... 2236 0.0
ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II su... 2234 0.0
ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago trunca... 2229 0.0
ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II su... 2226 0.0
>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
II subunit, putative [Ricinus communis]
Length = 1194
Score = 2239 bits (5801), Expect = 0.0
Identities = 1111/1167 (95%), Positives = 1130/1167 (96%)
Frame = -1
Query: 3755 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 3576
AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI
Sbjct: 28 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 87
Query: 3575 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 3396
YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT
Sbjct: 88 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 147
Query: 3395 ETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 3216
ETQDFTKVFIGKVPIMLRSSYCTL+QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 148 ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 207
Query: 3215 MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATL 3036
MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTS+KGGSSGQYIRATL
Sbjct: 208 MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 267
Query: 3035 PYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 2856
PYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 268 PYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 327
Query: 2855 IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 2676
IGKRGATVGVT+EKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR
Sbjct: 328 IGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 387
Query: 2675 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTI 2496
AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGKDVNLQFAIKAKTI
Sbjct: 388 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 447
Query: 2495 TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 2316
TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 448 TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 507
Query: 2315 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 2136
HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI
Sbjct: 508 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 567
Query: 2135 PQATKIFVNGCWMGIHRDPDMXXXXXXXXXXXXXVNTEVGVVRDIRLKELRIYTDYGRCS 1956
PQATKIFVNGCW+GIHRDPDM VNTEVGVVRDIRLKELRIYTDYGRCS
Sbjct: 568 PQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 627
Query: 1955 RPLFIVDKQRLLIKKKDIYALQQRETPEDAGWHDLVSKGFXXXXXXXXXXXXXXXXXIND 1776
RPLFIV+KQRLLIKKKDI+ALQQRE+ E+ GWHDLV+KGF I+D
Sbjct: 628 RPLFIVEKQRLLIKKKDIHALQQRESSEEGGWHDLVAKGFIEYIDTEEEETTMISMTIHD 687
Query: 1775 LVQARNNPEEAYSATYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 1596
LVQAR NPEEAYS TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV
Sbjct: 688 LVQARINPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 747
Query: 1595 TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 1416
TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN
Sbjct: 748 TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 807
Query: 1415 QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPG 1236
QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPG
Sbjct: 808 QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPG 867
Query: 1235 TRVSGEDVIIGKTTPLSQEEAQGQMARYSRRDHSISLRHSETGIVDQVLLTTNADGLRFV 1056
TRVSGEDVIIGKTTP++QEEAQGQ ARY+RRDHSISLRHSETGIVDQVLLTTNADGLRFV
Sbjct: 868 TRVSGEDVIIGKTTPIAQEEAQGQSARYTRRDHSISLRHSETGIVDQVLLTTNADGLRFV 927
Query: 1055 KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 876
KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG
Sbjct: 928 KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 987
Query: 875 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLSAM 696
QLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGRRL+AM
Sbjct: 988 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAM 1047
Query: 695 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 516
IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA
Sbjct: 1048 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 1107
Query: 515 HFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQ 336
HFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQV+IPYACKLLFQ
Sbjct: 1108 HFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQ 1167
Query: 335 ELMAMAIAPRMLTKEVKTIKDQKKKGA 255
ELMAMAIAPRMLTK+VK KDQKKKGA
Sbjct: 1168 ELMAMAIAPRMLTKDVKPTKDQKKKGA 1194
>ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
max]
Length = 1193
Score = 2236 bits (5794), Expect = 0.0
Identities = 1113/1167 (95%), Positives = 1126/1167 (96%)
Frame = -1
Query: 3755 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 3576
AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI
Sbjct: 28 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 87
Query: 3575 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 3396
YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRV+KKGHDGEEVT
Sbjct: 88 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVVKKGHDGEEVT 147
Query: 3395 ETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 3216
ETQD TKVFIGKVPIMLRSSYCTL+QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 148 ETQDLTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 207
Query: 3215 MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATL 3036
MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATL
Sbjct: 208 MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATL 267
Query: 3035 PYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 2856
PYIRTEIPIIIVFRALGFVADKDILEHICYDFSDT MMELLRPSLEEAFVIQNQQVALDY
Sbjct: 268 PYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTLMMELLRPSLEEAFVIQNQQVALDY 327
Query: 2855 IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 2676
IGKRGATVGVT+EKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR
Sbjct: 328 IGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 387
Query: 2675 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTI 2496
AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTI
Sbjct: 388 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTI 447
Query: 2495 TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 2316
TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 448 TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 507
Query: 2315 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 2136
HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI
Sbjct: 508 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 567
Query: 2135 PQATKIFVNGCWMGIHRDPDMXXXXXXXXXXXXXVNTEVGVVRDIRLKELRIYTDYGRCS 1956
PQATKIFVNGCWMGIHRDPDM VNTEVGVVRDI LKELRIYTDYGRCS
Sbjct: 568 PQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRVDVNTEVGVVRDIILKELRIYTDYGRCS 627
Query: 1955 RPLFIVDKQRLLIKKKDIYALQQRETPEDAGWHDLVSKGFXXXXXXXXXXXXXXXXXIND 1776
RPLFIVDKQRLLIKKKDI+ALQQRE+PED GWHDLVSKGF IND
Sbjct: 628 RPLFIVDKQRLLIKKKDIHALQQRESPEDGGWHDLVSKGFIEYIDTEEEETTMISMTIND 687
Query: 1775 LVQARNNPEEAYSATYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 1596
LVQAR NPE+AY+ TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV
Sbjct: 688 LVQARINPEDAYAGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 747
Query: 1595 TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 1416
TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN
Sbjct: 748 TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 807
Query: 1415 QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPG 1236
QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPG
Sbjct: 808 QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPG 867
Query: 1235 TRVSGEDVIIGKTTPLSQEEAQGQMARYSRRDHSISLRHSETGIVDQVLLTTNADGLRFV 1056
TRVSGEDVIIGKTTP+SQEEAQGQ RY+RRDHSISLRHSETGIVDQVLLTTNADGLRFV
Sbjct: 868 TRVSGEDVIIGKTTPISQEEAQGQALRYTRRDHSISLRHSETGIVDQVLLTTNADGLRFV 927
Query: 1055 KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 876
KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG
Sbjct: 928 KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 987
Query: 875 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLSAM 696
QLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGRRLSAM
Sbjct: 988 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAM 1047
Query: 695 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 516
IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA
Sbjct: 1048 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 1107
Query: 515 HFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQ 336
HFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQ
Sbjct: 1108 HFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQ 1167
Query: 335 ELMAMAIAPRMLTKEVKTIKDQKKKGA 255
ELMAMAIAPRMLTKEVKT +QKKKGA
Sbjct: 1168 ELMAMAIAPRMLTKEVKT-TNQKKKGA 1193
>ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
max]
Length = 1192
Score = 2234 bits (5789), Expect = 0.0
Identities = 1113/1167 (95%), Positives = 1125/1167 (96%)
Frame = -1
Query: 3755 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 3576
AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI
Sbjct: 28 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 87
Query: 3575 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 3396
YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVIKKGHDGEEVT
Sbjct: 88 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVT 147
Query: 3395 ETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 3216
E QDFTKVFIGKVPIMLRSSYCTL+QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 148 EAQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 207
Query: 3215 MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATL 3036
MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATL
Sbjct: 208 MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATL 267
Query: 3035 PYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 2856
PYIRTEIPIIIVFRALGFVADKDILEHICYDFS TQMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 268 PYIRTEIPIIIVFRALGFVADKDILEHICYDFSYTQMMELLRPSLEEAFVIQNQQVALDY 327
Query: 2855 IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 2676
IGKRGATVGVT+EKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR
Sbjct: 328 IGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 387
Query: 2675 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTI 2496
AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTI
Sbjct: 388 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTI 447
Query: 2495 TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 2316
TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 448 TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 507
Query: 2315 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 2136
HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI
Sbjct: 508 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 567
Query: 2135 PQATKIFVNGCWMGIHRDPDMXXXXXXXXXXXXXVNTEVGVVRDIRLKELRIYTDYGRCS 1956
PQATKIFVNGCWMGIHRDPDM VNTEVGVVRDIRLKELRIYTDYGRCS
Sbjct: 568 PQATKIFVNGCWMGIHRDPDMLVRTLKKLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 627
Query: 1955 RPLFIVDKQRLLIKKKDIYALQQRETPEDAGWHDLVSKGFXXXXXXXXXXXXXXXXXIND 1776
RPLFIVDKQRLLIKKKDI+ALQQRE+PED GWHDLVSKGF IND
Sbjct: 628 RPLFIVDKQRLLIKKKDIHALQQRESPEDGGWHDLVSKGFIEYIDTEEEETTMISMTIND 687
Query: 1775 LVQARNNPEEAYSATYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 1596
LVQAR NPE+AYS TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV
Sbjct: 688 LVQARINPEDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 747
Query: 1595 TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 1416
TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV+IACYSGYNQEDSVIMN
Sbjct: 748 TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVSIACYSGYNQEDSVIMN 807
Query: 1415 QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPG 1236
QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPG
Sbjct: 808 QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPG 867
Query: 1235 TRVSGEDVIIGKTTPLSQEEAQGQMARYSRRDHSISLRHSETGIVDQVLLTTNADGLRFV 1056
TRVSGEDVIIGKTTP+SQEEAQGQ RY+RRDHSISLRHSETGIVDQVLLTTNADGLRFV
Sbjct: 868 TRVSGEDVIIGKTTPISQEEAQGQALRYTRRDHSISLRHSETGIVDQVLLTTNADGLRFV 927
Query: 1055 KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 876
KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG
Sbjct: 928 KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 987
Query: 875 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLSAM 696
QLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGRRLSAM
Sbjct: 988 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAM 1047
Query: 695 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 516
IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA
Sbjct: 1048 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 1107
Query: 515 HFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQ 336
HFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQ
Sbjct: 1108 HFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQ 1167
Query: 335 ELMAMAIAPRMLTKEVKTIKDQKKKGA 255
ELMAMAIAPRMLTKEVKT +KKGA
Sbjct: 1168 ELMAMAIAPRMLTKEVKT--TNQKKGA 1192
>ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355478420|gb|AES59623.1| DNA-directed RNA polymerase
[Medicago truncatula]
Length = 1213
Score = 2229 bits (5777), Expect = 0.0
Identities = 1114/1185 (94%), Positives = 1128/1185 (95%), Gaps = 18/1185 (1%)
Frame = -1
Query: 3755 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 3576
AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI
Sbjct: 29 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 88
Query: 3575 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 3396
YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVIKKGHDGEEVT
Sbjct: 89 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVT 148
Query: 3395 ETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 3216
ETQDFTKVFIGKVPIMLRSSYCTL+QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 149 ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 208
Query: 3215 MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATL 3036
MSTNHVYVFKKRQPNKYAYV EVRSMAESQNRPPSTMFVRMLSR S+KGGSSGQYIRATL
Sbjct: 209 MSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSTMFVRMLSRASAKGGSSGQYIRATL 268
Query: 3035 PYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 2856
PYIRTEIPIIIVFRALGFVADKDILEHICYDF+DTQMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 269 PYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDY 328
Query: 2855 IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 2676
IGKRG+TVGVT+EKRIKYAK+ILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR
Sbjct: 329 IGKRGSTVGVTKEKRIKYAKDILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 388
Query: 2675 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTI 2496
AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTI
Sbjct: 389 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTI 448
Query: 2495 TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 2316
TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 449 TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 508
Query: 2315 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE------- 2157
HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE
Sbjct: 509 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEVLVISFI 568
Query: 2156 -EISPAVIPQATKIFVNGCWMGIHRDPDM----------XXXXXXXXXXXXXVNTEVGVV 2010
EISPAVIPQATKIFVNGCWMGIHRDPDM VNTEVGVV
Sbjct: 569 KEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRFSAEGFDVVQVDVNTEVGVV 628
Query: 2009 RDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIYALQQRETPEDAGWHDLVSKGFXX 1830
RDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDI++LQQRE+PED GWHDLVSKGF
Sbjct: 629 RDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHSLQQRESPEDGGWHDLVSKGFIE 688
Query: 1829 XXXXXXXXXXXXXXXINDLVQARNNPEEAYSATYTHCEIHPSLILGVCASIIPFPDHNQS 1650
INDLVQAR NPEEAYS TYTHCEIHPSLILGVCASIIPFPDHNQS
Sbjct: 689 YIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQS 748
Query: 1649 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 1470
PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI
Sbjct: 749 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 808
Query: 1469 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 1290
VAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR+NTMG
Sbjct: 809 VAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMG 868
Query: 1289 MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEAQGQMARYSRRDHSISLRHSET 1110
MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEE QGQ ARYS+RDHSISLRHSET
Sbjct: 869 MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEQQGQAARYSKRDHSISLRHSET 928
Query: 1109 GIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 930
GIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI
Sbjct: 929 GIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 988
Query: 929 TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQM 750
TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQM
Sbjct: 989 TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQM 1048
Query: 749 RGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG 570
RGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG
Sbjct: 1049 RGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG 1108
Query: 569 GLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKN 390
GLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKN
Sbjct: 1109 GLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKN 1168
Query: 389 KTDIVQVYIPYACKLLFQELMAMAIAPRMLTKEVKTIKDQKKKGA 255
KTDIVQVYIPYACKLLFQELMAMAIAPRMLTKEVK IKDQKKKGA
Sbjct: 1169 KTDIVQVYIPYACKLLFQELMAMAIAPRMLTKEVKAIKDQKKKGA 1213
>ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
sativus] gi|449479313|ref|XP_004155566.1| PREDICTED:
DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
sativus]
Length = 1199
Score = 2226 bits (5769), Expect = 0.0
Identities = 1103/1167 (94%), Positives = 1125/1167 (96%)
Frame = -1
Query: 3755 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 3576
AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD AETI
Sbjct: 33 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDVAETI 92
Query: 3575 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 3396
YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVIKKGHDGEEVT
Sbjct: 93 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVT 152
Query: 3395 ETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 3216
ETQDFTKVFIGKVPIMLRSSYCTL+QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 153 ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 212
Query: 3215 MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATL 3036
MSTNHVYVFKKRQPNKYA+VAEVRSMAESQNRPPSTMFVRMLSRTS+KGGSSGQYIRATL
Sbjct: 213 MSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 272
Query: 3035 PYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 2856
PYIR EIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 273 PYIRNEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 332
Query: 2855 IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 2676
IGKRG+TVGVT+EKRIKYAKEILQKEMLPHVGVGE+CETKKAYYFGYIIHRLLLCALGRR
Sbjct: 333 IGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRR 392
Query: 2675 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTI 2496
AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTI
Sbjct: 393 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTI 452
Query: 2495 TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 2316
TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 453 TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 512
Query: 2315 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 2136
HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI
Sbjct: 513 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 572
Query: 2135 PQATKIFVNGCWMGIHRDPDMXXXXXXXXXXXXXVNTEVGVVRDIRLKELRIYTDYGRCS 1956
PQATKIFVNGCW+GIHRDP+M VNTEVGVVRDIRLKELRIYTDYGRCS
Sbjct: 573 PQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 632
Query: 1955 RPLFIVDKQRLLIKKKDIYALQQRETPEDAGWHDLVSKGFXXXXXXXXXXXXXXXXXIND 1776
RPLFIV+KQRLLIKKKDI+ALQQRE+PED GWHDLV+KGF I+D
Sbjct: 633 RPLFIVEKQRLLIKKKDIHALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTISD 692
Query: 1775 LVQARNNPEEAYSATYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 1596
L+QAR NP EAYS TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV
Sbjct: 693 LIQARINPVEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 752
Query: 1595 TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 1416
TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN
Sbjct: 753 TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 812
Query: 1415 QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPG 1236
QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPG
Sbjct: 813 QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPG 872
Query: 1235 TRVSGEDVIIGKTTPLSQEEAQGQMARYSRRDHSISLRHSETGIVDQVLLTTNADGLRFV 1056
TRVSGEDVIIGKTTP+SQEEAQGQ ARYSRRDHSISLRHSE GIVDQVLLTTNADGLRFV
Sbjct: 873 TRVSGEDVIIGKTTPISQEEAQGQAARYSRRDHSISLRHSENGIVDQVLLTTNADGLRFV 932
Query: 1055 KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 876
KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG
Sbjct: 933 KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 992
Query: 875 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLSAM 696
QLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGRRLSAM
Sbjct: 993 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAM 1052
Query: 695 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 516
IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA
Sbjct: 1053 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 1112
Query: 515 HFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQ 336
HFLKERLFDQSDAYR+HVCE CGLIAIANLKK+SFECRGCKNKTDIVQVYIPYACKLLFQ
Sbjct: 1113 HFLKERLFDQSDAYRIHVCECCGLIAIANLKKSSFECRGCKNKTDIVQVYIPYACKLLFQ 1172
Query: 335 ELMAMAIAPRMLTKEVKTIKDQKKKGA 255
ELMAMAIAPRM TKE+K +KDQKKKG+
Sbjct: 1173 ELMAMAIAPRMFTKEIKPLKDQKKKGS 1199