BLASTX nr result

ID: Glycyrrhiza24_contig00003347 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00003347
         (220 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK47384.1| unknown [Lotus japonicus]                               73   3e-11
gb|AFK42498.1| unknown [Medicago truncatula]                           69   3e-10
ref|XP_002318093.1| predicted protein [Populus trichocarpa] gi|2...    69   3e-10
ref|XP_004161367.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop...    64   1e-08
ref|XP_004138078.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop...    64   1e-08

>gb|AFK47384.1| unknown [Lotus japonicus]
          Length = 307

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 37/59 (62%), Positives = 42/59 (71%)
 Frame = +2

Query: 44  PKWGNEDDDETQSEGEVVEDVNFGEVGFAEPSEDLKIFVGNLPFDVDSEKLAMLFEQSG 220
           P W NED DET+   EVV          AEPSEDLKIFVGNLP+DV+SE LAMLFE++G
Sbjct: 94  PTWANEDSDETEGGEEVVAS--------AEPSEDLKIFVGNLPWDVESENLAMLFEEAG 144


>gb|AFK42498.1| unknown [Medicago truncatula]
          Length = 300

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 36/57 (63%), Positives = 38/57 (66%)
 Frame = +2

Query: 50  WGNEDDDETQSEGEVVEDVNFGEVGFAEPSEDLKIFVGNLPFDVDSEKLAMLFEQSG 220
           W N+ D     E E  E+       F EPSEDLKIFVGNLPFDVDSEKLA LFEQSG
Sbjct: 90  WENQADATWVGETESNENEEVEVASFEEPSEDLKIFVGNLPFDVDSEKLAQLFEQSG 146


>ref|XP_002318093.1| predicted protein [Populus trichocarpa] gi|222858766|gb|EEE96313.1|
           predicted protein [Populus trichocarpa]
          Length = 327

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 34/59 (57%), Positives = 41/59 (69%)
 Frame = +2

Query: 44  PKWGNEDDDETQSEGEVVEDVNFGEVGFAEPSEDLKIFVGNLPFDVDSEKLAMLFEQSG 220
           P+W  E +D   +E    E  +  E GF EP E+ KIFVGNLP+DVDSEKLAMLFEQ+G
Sbjct: 115 PEWEAEGEDAAATEAIRGEGESGDEEGFVEPPEEAKIFVGNLPYDVDSEKLAMLFEQAG 173


>ref|XP_004161367.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like, partial
           [Cucumis sativus]
          Length = 324

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 18/77 (23%)
 Frame = +2

Query: 44  PKWGNEDDDETQS-----EGEVVEDVNFGEVG-------------FAEPSEDLKIFVGNL 169
           P W NE+  ET+S     EGE  +  +  EVG             + EP+ED K+FVGNL
Sbjct: 94  PHWENEELSETESRISDWEGEGEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNL 153

Query: 170 PFDVDSEKLAMLFEQSG 220
           P+D+DSEKLAMLFE++G
Sbjct: 154 PYDIDSEKLAMLFEKAG 170


>ref|XP_004138078.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
           sativus]
          Length = 330

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 18/77 (23%)
 Frame = +2

Query: 44  PKWGNEDDDETQS-----EGEVVEDVNFGEVG-------------FAEPSEDLKIFVGNL 169
           P W NE+  ET+S     EGE  +  +  EVG             + EP+ED K+FVGNL
Sbjct: 100 PHWENEELSETESRISDWEGEGEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNL 159

Query: 170 PFDVDSEKLAMLFEQSG 220
           P+D+DSEKLAMLFE++G
Sbjct: 160 PYDIDSEKLAMLFEKAG 176


Top