BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00003276
         (2758 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003625033.1| DNA-directed RNA polymerases I, II, and III ...   358   6e-96
gb|AFK43162.1| unknown [Medicago truncatula]                          355   3e-95
ref|NP_001236527.1| uncharacterized protein LOC100306033 [Glycin...   350   9e-94
ref|XP_002529165.1| DNA-directed RNA polymerase II, putative [Ri...   332   3e-88
ref|XP_004136650.1| PREDICTED: DNA-directed RNA polymerases I, I...   310   1e-81

>ref|XP_003625033.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Medicago
            truncatula] gi|124359979|gb|ABN07995.1| RNA polymerase
            subunit, RPB5; RNA polymerase Rpb5, N-terminal [Medicago
            truncatula] gi|355500048|gb|AES81251.1| DNA-directed RNA
            polymerases I, II, and III subunit RPABC1 [Medicago
            truncatula]
          Length = 248

 Score =  358 bits (918), Expect = 6e-96
 Identities = 176/211 (83%), Positives = 197/211 (93%)
 Frame = +2

Query: 1871 CLISTEKEEGSIESHRYYLSRRTTLEMLKDRGYSIPSSETNLSLSEFRAIHGHSPDVDRL 2050
            CL  T+K+ GSIESHRYYLSRRT LEMLKDRGYSIPS E  LSL +FR IHG SPDVDRL
Sbjct: 39   CLF-TKKDNGSIESHRYYLSRRTVLEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDRL 97

Query: 2051 RFSATHSSNPSKRVLVIFTGPGAVKVNAIRNIAGQIVNKDTLTGLILIVQNQITSQALKA 2230
            R +ATH++NPSKR+LV+F+GPG VKVN +R+IAGQIVN+++LTGLILIVQNQITSQALKA
Sbjct: 98   RLTATHATNPSKRILVVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKA 157

Query: 2231 VNLLNFKVEIFQITDLLVNITKHVLKPKHQVLTDRQKQNLLKKYNIEEKQLPRMLQTDAI 2410
            VNLL+FKVEIFQITDLLVN TKHVLKPKHQVLTD+QK+NLLKKY+I+EKQLPRMLQTDAI
Sbjct: 158  VNLLSFKVEIFQITDLLVNATKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAI 217

Query: 2411 ARYYGLERGQVVKVTYSGEITQMHVTYRCVW 2503
            ARYYGL+RGQVVKVTY+GEITQMHVTYRCVW
Sbjct: 218  ARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 248


>gb|AFK43162.1| unknown [Medicago truncatula]
          Length = 248

 Score =  355 bits (912), Expect = 3e-95
 Identities = 175/211 (82%), Positives = 196/211 (92%)
 Frame = +2

Query: 1871 CLISTEKEEGSIESHRYYLSRRTTLEMLKDRGYSIPSSETNLSLSEFRAIHGHSPDVDRL 2050
            CL  T+K+ GSIESHRYYLSRRT LEMLKDRGYSIPS E  LSL +FR IHG SPDVDRL
Sbjct: 39   CLF-TKKDNGSIESHRYYLSRRTVLEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDRL 97

Query: 2051 RFSATHSSNPSKRVLVIFTGPGAVKVNAIRNIAGQIVNKDTLTGLILIVQNQITSQALKA 2230
            R +ATH++NPSKR+LV+F+GPG VKVN +R+IAGQIVN+++LTGLILIVQNQITSQALKA
Sbjct: 98   RLTATHATNPSKRILVVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKA 157

Query: 2231 VNLLNFKVEIFQITDLLVNITKHVLKPKHQVLTDRQKQNLLKKYNIEEKQLPRMLQTDAI 2410
            VNLL+FKVEI QITDLLVN TKHVLKPKHQVLTD+QK+NLLKKY+I+EKQLPRMLQTDAI
Sbjct: 158  VNLLSFKVEILQITDLLVNATKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAI 217

Query: 2411 ARYYGLERGQVVKVTYSGEITQMHVTYRCVW 2503
            ARYYGL+RGQVVKVTY+GEITQMHVTYRCVW
Sbjct: 218  ARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 248


>ref|NP_001236527.1| uncharacterized protein LOC100306033 [Glycine max]
            gi|255627335|gb|ACU14012.1| unknown [Glycine max]
          Length = 237

 Score =  350 bits (899), Expect = 9e-94
 Identities = 174/204 (85%), Positives = 187/204 (91%)
 Frame = +2

Query: 1892 EEGSIESHRYYLSRRTTLEMLKDRGYSIPSSETNLSLSEFRAIHGHSPDVDRLRFSATHS 2071
            + GS+ESHRYYLSRRTTLEMLKDRGYSIPS E +LSLS+FR IHG  PD DRLR S TH+
Sbjct: 34   DNGSVESHRYYLSRRTTLEMLKDRGYSIPSHEIDLSLSDFRDIHGQFPDPDRLRLSLTHA 93

Query: 2072 SNPSKRVLVIFTGPGAVKVNAIRNIAGQIVNKDTLTGLILIVQNQITSQALKAVNLLNFK 2251
            +N SKR+LVIF GPG VKV AIRN AGQI+N+DTLTGLILIV+N ITSQALKAVNL +FK
Sbjct: 94   TNSSKRILVIFCGPGVVKVTAIRNTAGQIINRDTLTGLILIVENHITSQALKAVNLFSFK 153

Query: 2252 VEIFQITDLLVNITKHVLKPKHQVLTDRQKQNLLKKYNIEEKQLPRMLQTDAIARYYGLE 2431
            VEIFQITDLLVNITKHVLKPKHQVLTD+QK NLLKKYNIEEKQLPRMLQTDAIARYYGLE
Sbjct: 154  VEIFQITDLLVNITKHVLKPKHQVLTDKQKINLLKKYNIEEKQLPRMLQTDAIARYYGLE 213

Query: 2432 RGQVVKVTYSGEITQMHVTYRCVW 2503
            RGQVVKVTYSGE+TQMHVTYRCVW
Sbjct: 214  RGQVVKVTYSGEVTQMHVTYRCVW 237


>ref|XP_002529165.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
            gi|223531389|gb|EEF33224.1| DNA-directed RNA polymerase
            II, putative [Ricinus communis]
          Length = 238

 Score =  332 bits (852), Expect = 3e-88
 Identities = 161/208 (77%), Positives = 190/208 (91%)
 Frame = +2

Query: 1880 STEKEEGSIESHRYYLSRRTTLEMLKDRGYSIPSSETNLSLSEFRAIHGHSPDVDRLRFS 2059
            S+  ++G+ E+HRYYLSRRT LEML+DRGYS+PSSE +LSL EFRAIHG +PD+DRL+FS
Sbjct: 31   SSYADDGTHETHRYYLSRRTVLEMLRDRGYSVPSSEIDLSLQEFRAIHGPNPDIDRLKFS 90

Query: 2060 ATHSSNPSKRVLVIFTGPGAVKVNAIRNIAGQIVNKDTLTGLILIVQNQITSQALKAVNL 2239
            ATH+S+PSKR+LV+F GPG +KV+ IR IAGQIVNKD+LTGLIL++QNQIT+QA+KAV+L
Sbjct: 91   ATHTSDPSKRMLVLFGGPGIIKVSTIRAIAGQIVNKDSLTGLILVLQNQITNQAMKAVDL 150

Query: 2240 LNFKVEIFQITDLLVNITKHVLKPKHQVLTDRQKQNLLKKYNIEEKQLPRMLQTDAIARY 2419
              FKVE+FQITDLLVNITKHVLKPKHQVLTDR+KQ LLK Y IEEKQLPR+L+ DAIARY
Sbjct: 151  FKFKVEMFQITDLLVNITKHVLKPKHQVLTDREKQKLLKDYCIEEKQLPRLLRKDAIARY 210

Query: 2420 YGLERGQVVKVTYSGEITQMHVTYRCVW 2503
            YGLE+GQVVKVTYSGEIT+ HVTYRCVW
Sbjct: 211  YGLEKGQVVKVTYSGEITESHVTYRCVW 238


>ref|XP_004136650.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
            RPABC1-like [Cucumis sativus]
            gi|449524637|ref|XP_004169328.1| PREDICTED: DNA-directed
            RNA polymerases I, II, and III subunit RPABC1-like
            [Cucumis sativus]
          Length = 227

 Score =  310 bits (794), Expect = 1e-81
 Identities = 152/209 (72%), Positives = 179/209 (85%)
 Frame = +2

Query: 1877 ISTEKEEGSIESHRYYLSRRTTLEMLKDRGYSIPSSETNLSLSEFRAIHGHSPDVDRLRF 2056
            +S+  ++G+ ESHRY+LSRRT +EMLKDRGY+I S   + SL +FR   G  PDVDRL+ 
Sbjct: 19   LSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSLQQFRETFGQFPDVDRLKL 78

Query: 2057 SATHSSNPSKRVLVIFTGPGAVKVNAIRNIAGQIVNKDTLTGLILIVQNQITSQALKAVN 2236
            SA H S+PSKRVLV+F G GAVKVNAIRNIAGQI NKD+L GLILIVQNQIT+QA+KAV 
Sbjct: 79   SAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVE 138

Query: 2237 LLNFKVEIFQITDLLVNITKHVLKPKHQVLTDRQKQNLLKKYNIEEKQLPRMLQTDAIAR 2416
            L +FKVEIFQITDLLVNITKH LKP HQVLT+ +KQ LLK+Y+IEEKQLPRML+TDAIAR
Sbjct: 139  LFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIAR 198

Query: 2417 YYGLERGQVVKVTYSGEITQMHVTYRCVW 2503
            YYGLE+GQVVKVTY G++T+ H+TYRCVW
Sbjct: 199  YYGLEKGQVVKVTYDGDMTRAHITYRCVW 227