BLASTX nr result

ID: Glycyrrhiza24_contig00002929 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00002929
         (531 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003532529.1| PREDICTED: probable ATP-dependent RNA helica...   226   1e-57
ref|XP_003524350.1| PREDICTED: probable ATP-dependent RNA helica...   225   4e-57
ref|XP_003631052.1| ATP-dependent RNA helicase A-like protein [M...   219   2e-55
ref|XP_002277625.2| PREDICTED: probable ATP-dependent RNA helica...   178   5e-43
ref|XP_002894123.1| helicase domain-containing protein [Arabidop...   178   5e-43

>ref|XP_003532529.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine
           max]
          Length = 1177

 Score =  226 bits (577), Expect = 1e-57
 Identities = 121/172 (70%), Positives = 137/172 (79%), Gaps = 4/172 (2%)
 Frame = -2

Query: 506 TLAMPFCHQNFSTYGRFAAYQXXXXXXXXVEEFASSHSRPNNQQLGGSSLENIDEWRWKL 327
           TL +PF HQ  STYGRFA YQ        VE FASS S  +NQQLG S+ ENIDEWRWKL
Sbjct: 61  TLKLPFWHQRSSTYGRFA-YQDVSSDESDVE-FASSPS--HNQQLGDSTHENIDEWRWKL 116

Query: 326 TMLLRNKDEQEVVSKDKKDRRDFQQLEALATRMGLYSRQYAKVVVFSKAPLPNYRPDLDD 147
           TML+RNKD+QEVVS++KKDRRDF+QL  +A+RMGLYSRQYA+VVVFSKAPLPNYRPDLDD
Sbjct: 117 TMLMRNKDDQEVVSREKKDRRDFEQLSTVASRMGLYSRQYARVVVFSKAPLPNYRPDLDD 176

Query: 146 KRPQREVMLPFGVHREVDTHLRAHLSHKTTN----LGDSLGRSSDAGNIPAN 3
           KRPQREV+LP GVH+EVD HL AHLS K  N    L DSL +S D+ +IPAN
Sbjct: 177 KRPQREVVLPLGVHKEVDAHLLAHLSQKARNKWGSLSDSLHKSRDSRSIPAN 228


>ref|XP_003524350.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine
           max]
          Length = 1180

 Score =  225 bits (573), Expect = 4e-57
 Identities = 121/172 (70%), Positives = 134/172 (77%), Gaps = 4/172 (2%)
 Frame = -2

Query: 506 TLAMPFCHQNFSTYGRFAAYQXXXXXXXXVEEFASSHSRPNNQQLGGSSLENIDEWRWKL 327
           T   PF HQ  STYGRFA YQ        VE FASS S  +NQQLG S+ ENID+WRWKL
Sbjct: 64  TFKFPFWHQRSSTYGRFA-YQDVSSDESDVE-FASSPS--HNQQLGDSTHENIDDWRWKL 119

Query: 326 TMLLRNKDEQEVVSKDKKDRRDFQQLEALATRMGLYSRQYAKVVVFSKAPLPNYRPDLDD 147
           TML+RNKDEQE VS++KKDRRDF+QL  LATRMGLYSRQYA+VVVFSKAPLPNYRPDLDD
Sbjct: 120 TMLMRNKDEQEAVSREKKDRRDFEQLSTLATRMGLYSRQYARVVVFSKAPLPNYRPDLDD 179

Query: 146 KRPQREVMLPFGVHREVDTHLRAHLSHKTTN----LGDSLGRSSDAGNIPAN 3
           KRPQREV+LP GVH+EVD HL AHLS K  N    + DSL  SSD+ +IPAN
Sbjct: 180 KRPQREVVLPLGVHKEVDAHLLAHLSQKARNKWDFMEDSLHNSSDSRSIPAN 231


>ref|XP_003631052.1| ATP-dependent RNA helicase A-like protein [Medicago truncatula]
           gi|355525074|gb|AET05528.1| ATP-dependent RNA helicase
           A-like protein [Medicago truncatula]
          Length = 1214

 Score =  219 bits (558), Expect = 2e-55
 Identities = 127/219 (57%), Positives = 135/219 (61%), Gaps = 46/219 (21%)
 Frame = -2

Query: 521 HGAHSTLAMPFCHQNFSTYGRFAAYQXXXXXXXXVEEFASSHSRPNNQQLGGSSLENIDE 342
           H  H T A+PF HQ  STYGRFA             EFASS  RP  QQLG S+LENID 
Sbjct: 50  HHRHRTFALPFFHQQTSTYGRFAFKDVSSDESDL--EFASS--RPQQQQLGDSTLENIDS 105

Query: 341 WRWKLTMLLRNKDEQEVVSKDKKDRRDFQQLEALATRMGLYSRQYAKVVVFSKAPLPNYR 162
           WRWKLTMLLRNKD+QEVVS +KKDRRDF QLE LATRMGLYSRQYA+VVVFSKAPLPNYR
Sbjct: 106 WRWKLTMLLRNKDQQEVVSNEKKDRRDFLQLETLATRMGLYSRQYARVVVFSKAPLPNYR 165

Query: 161 PDLDDKRPQRE------------------------------------------VMLPFGV 108
           PDLDDKRP RE                                          V LPFGV
Sbjct: 166 PDLDDKRPLREFSSTLILLFDVLNATREVDFVVVTGGSDGVDDSSGGGGGGICVTLPFGV 225

Query: 107 HREVDTHLRAHLSHKTT----NLGDSLGRSSDAGNIPAN 3
           HREVDTHL AHLSHK T    +  DSL RS D G+IPA+
Sbjct: 226 HREVDTHLLAHLSHKATKRVGSFDDSLHRSRDDGSIPAD 264


>ref|XP_002277625.2| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Vitis
           vinifera]
          Length = 1178

 Score =  178 bits (451), Expect = 5e-43
 Identities = 95/167 (56%), Positives = 114/167 (68%), Gaps = 8/167 (4%)
 Frame = -2

Query: 503 LAMPFCHQNFSTYGRFAAYQXXXXXXXXVEEFASSHSRPNNQQLGGSSLENIDEWRWKLT 324
           +A+P+     S YGRFA             E A        QQ+  S+ ENIDEW+WKLT
Sbjct: 68  VALPYLFHQNSRYGRFAYDDFSEYDSDREVESAQQ------QQMRASTHENIDEWKWKLT 121

Query: 323 MLLRNKDEQEVVSKDKKDRRDFQQLEALATRMGLYSRQYAKVVVFSKAPLPNYRPDLDDK 144
           ML+RNKDEQEVVS +KKDRRDF+Q+ ALATRMGLYS QY++VVVFSK PLPNYR DLDDK
Sbjct: 122 MLIRNKDEQEVVSTEKKDRRDFEQISALATRMGLYSCQYSRVVVFSKVPLPNYRSDLDDK 181

Query: 143 RPQREVMLPFGVHREVDTHLRAHLSHKTTN--------LGDSLGRSS 27
           RPQREV+LPFG+ REV  HL+ +LS K+ +        L  S+G SS
Sbjct: 182 RPQREVVLPFGLQREVHAHLKEYLSQKSMSRESFSDKTLSRSIGNSS 228


>ref|XP_002894123.1| helicase domain-containing protein [Arabidopsis lyrata subsp.
           lyrata] gi|297339965|gb|EFH70382.1| helicase
           domain-containing protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1197

 Score =  178 bits (451), Expect = 5e-43
 Identities = 92/162 (56%), Positives = 117/162 (72%)
 Frame = -2

Query: 497 MPFCHQNFSTYGRFAAYQXXXXXXXXVEEFASSHSRPNNQQLGGSSLENIDEWRWKLTML 318
           +P+  +  S YGR A Y           +  SS S    QQ+ GS+L+NID+WR KLTML
Sbjct: 90  LPYFQRQNSGYGRIA-YNDYESSDESDRDVGSSQS----QQMAGSTLDNIDQWRLKLTML 144

Query: 317 LRNKDEQEVVSKDKKDRRDFQQLEALATRMGLYSRQYAKVVVFSKAPLPNYRPDLDDKRP 138
           LRNK++QEVVS+++KDRRDF  + A+ATRMGL+SRQY+K+VV SKAPLPNYRPDLDDKRP
Sbjct: 145 LRNKEDQEVVSRERKDRRDFDHISAMATRMGLHSRQYSKIVVISKAPLPNYRPDLDDKRP 204

Query: 137 QREVMLPFGVHREVDTHLRAHLSHKTTNLGDSLGRSSDAGNI 12
           QREV+LPFG+  EVDTHL A L  K T L + + R +  G++
Sbjct: 205 QREVVLPFGLQSEVDTHLHAFLDQKKTLLPE-MSRPNSNGSL 245


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