BLASTX nr result

ID: Glycyrrhiza24_contig00002633 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00002633
         (635 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003523208.1| PREDICTED: small nuclear ribonucleoprotein E...   157   2e-36
ref|XP_003542280.1| PREDICTED: small nuclear ribonucleoprotein E...   157   2e-36
ref|XP_003597961.1| Small nuclear ribonucleoprotein E [Medicago ...   156   3e-36
ref|XP_004139778.1| PREDICTED: small nuclear ribonucleoprotein E...   155   6e-36
ref|XP_003549500.1| PREDICTED: small nuclear ribonucleoprotein E...   155   8e-36

>ref|XP_003523208.1| PREDICTED: small nuclear ribonucleoprotein E-like [Glycine max]
           gi|356516401|ref|XP_003526883.1| PREDICTED: small
           nuclear ribonucleoprotein E [Glycine max]
           gi|388501720|gb|AFK38926.1| unknown [Lotus japonicus]
          Length = 88

 Score =  157 bits (397), Expect = 2e-36
 Identities = 88/119 (73%), Positives = 88/119 (73%)
 Frame = +2

Query: 89  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 268
           MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQ                          
Sbjct: 1   MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQ-------------------------- 34

Query: 269 XXFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNTGK 445
                KDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNTGK
Sbjct: 35  -----KDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNTGK 88


>ref|XP_003542280.1| PREDICTED: small nuclear ribonucleoprotein E-like [Glycine max]
           gi|255627911|gb|ACU14300.1| unknown [Glycine max]
          Length = 88

 Score =  157 bits (396), Expect = 2e-36
 Identities = 87/119 (73%), Positives = 88/119 (73%)
 Frame = +2

Query: 89  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 268
           MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQ                          
Sbjct: 1   MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQ-------------------------- 34

Query: 269 XXFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNTGK 445
                KDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKSRKTLGRILLKGDNITLMMNTGK
Sbjct: 35  -----KDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSRKTLGRILLKGDNITLMMNTGK 88


>ref|XP_003597961.1| Small nuclear ribonucleoprotein E [Medicago truncatula]
           gi|357491039|ref|XP_003615807.1| Small nuclear
           ribonucleoprotein E [Medicago truncatula]
           gi|355487009|gb|AES68212.1| Small nuclear
           ribonucleoprotein E [Medicago truncatula]
           gi|355517142|gb|AES98765.1| Small nuclear
           ribonucleoprotein E [Medicago truncatula]
           gi|388498322|gb|AFK37227.1| unknown [Medicago
           truncatula]
          Length = 88

 Score =  156 bits (394), Expect = 3e-36
 Identities = 87/119 (73%), Positives = 88/119 (73%)
 Frame = +2

Query: 89  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 268
           MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQ                          
Sbjct: 1   MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQ-------------------------- 34

Query: 269 XXFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNTGK 445
                KDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKS+KTLGRILLKGDNITLMMNTGK
Sbjct: 35  -----KDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLGRILLKGDNITLMMNTGK 88


>ref|XP_004139778.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis sativus]
           gi|449444032|ref|XP_004139779.1| PREDICTED: small
           nuclear ribonucleoprotein E-like [Cucumis sativus]
           gi|449502888|ref|XP_004161771.1| PREDICTED: small
           nuclear ribonucleoprotein E-like [Cucumis sativus]
          Length = 88

 Score =  155 bits (392), Expect = 6e-36
 Identities = 86/119 (72%), Positives = 88/119 (73%)
 Frame = +2

Query: 89  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 268
           MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQ                          
Sbjct: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQ-------------------------- 34

Query: 269 XXFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNTGK 445
                KDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN+GK
Sbjct: 35  -----KDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNSGK 88


>ref|XP_003549500.1| PREDICTED: small nuclear ribonucleoprotein E [Glycine max]
           gi|255628153|gb|ACU14421.1| unknown [Glycine max]
          Length = 88

 Score =  155 bits (391), Expect = 8e-36
 Identities = 86/119 (72%), Positives = 88/119 (73%)
 Frame = +2

Query: 89  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 268
           MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQ                          
Sbjct: 1   MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQ-------------------------- 34

Query: 269 XXFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNTGK 445
                KDLRIEGRIIGFDEYMNLVLDDAEEV++KKKSRKTLGRILLKGDNITLMMNTGK
Sbjct: 35  -----KDLRIEGRIIGFDEYMNLVLDDAEEVSIKKKSRKTLGRILLKGDNITLMMNTGK 88


Top