BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00002415
         (2102 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor rpoD-...   850   0.0  
ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor rpoD-...   836   0.0  
ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [...   738   0.0  
ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|2...   725   0.0  
ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-...   700   0.0  

>ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
          Length = 503

 Score =  850 bits (2196), Expect = 0.0
 Identities = 444/514 (86%), Positives = 473/514 (92%), Gaps = 1/514 (0%)
 Frame = +3

Query: 297  MATAAVIGLSGGKRLLCSSYHYSDIIEKFSYGCDFGSTHYQIAPTKSVIIAKKSSSNYTT 476
            MATAAVIGLSGGKRLL SSYHYSDIIEK SYG DFGSTHYQI PTKS+I+AKKSS NYT 
Sbjct: 1    MATAAVIGLSGGKRLLSSSYHYSDIIEKLSYGSDFGSTHYQIVPTKSLIVAKKSS-NYT- 58

Query: 477  PTFSASDRQNQSIKALKEHVDGAPAIAEDPWFCN-SSSDLEVESSDMGYSLEALLLLQKS 653
            PTF AS++QNQSIKALKEHVD AP IA DPWF + +S+DLEVESS+MGYS+EALLLLQKS
Sbjct: 59   PTFPASNQQNQSIKALKEHVDDAPTIA-DPWFQSYNSNDLEVESSEMGYSVEALLLLQKS 117

Query: 654  MLEKQWNLSFEREVLTENSRREKSHRKVAVTCSGVSARQRRMSTKRKITGKHGSAMMQRP 833
            MLEKQWNLSFEREVLTENS + K  RKVAVTCSGVSARQRRM+TKRK   K         
Sbjct: 118  MLEKQWNLSFEREVLTENSSKGKKCRKVAVTCSGVSARQRRMNTKRKTAIK--------T 169

Query: 834  CAAMQLRSTISPELLQSRLKGYVKGVVSDELLSHAEVVKLSQKIKAGLSLDEHKSRLKER 1013
            C AMQL+S ISPELLQ RLKGYVKG+VS+ELLSHAEVV LS+KIK GLSL+EHKSRLKE+
Sbjct: 170  CGAMQLKSKISPELLQHRLKGYVKGLVSEELLSHAEVVNLSEKIKVGLSLEEHKSRLKEK 229

Query: 1014 LGCEPSDDQVATSLKISRAELRAKMIECSLAREKLTMSNVRLVMSIAQKYDNMGAEMSDL 1193
            LGCEPSDDQ+ATSLKISR ELRA+MIECSLAREKL MSNVRLVMSIAQKYDN+GAEM DL
Sbjct: 230  LGCEPSDDQMATSLKISRTELRARMIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMGDL 289

Query: 1194 VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIR 1373
            VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERLSLIR
Sbjct: 290  VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSLIR 349

Query: 1374 NAEFRLEERGITPTIDRIAKCLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHS 1553
            NA+FRLEERGITPTIDRIAK LNMSQKKVRNATEAISK+ SLDREAFPSLNGL G+THHS
Sbjct: 350  NAKFRLEERGITPTIDRIAKYLNMSQKKVRNATEAISKIISLDREAFPSLNGLQGETHHS 409

Query: 1554 YIADKRLENIPWNGVDEWALKDEVNKLIDVTLVEREREIIRLYYGLDKECLTWEDISKRI 1733
            YIAD R+ENIPWNGVDEWALKDEVN+LI+VTLVEREREIIRLYYGL+KECLTWEDISKRI
Sbjct: 410  YIADNRVENIPWNGVDEWALKDEVNRLINVTLVEREREIIRLYYGLEKECLTWEDISKRI 469

Query: 1734 GLSRERVRQVGLVALEKLKHAARKKEMEAMLLKH 1835
            GLSRERVRQVGLVALEKLKHAARK++MEAMLLKH
Sbjct: 470  GLSRERVRQVGLVALEKLKHAARKRQMEAMLLKH 503


>ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
          Length = 503

 Score =  836 bits (2160), Expect = 0.0
 Identities = 440/515 (85%), Positives = 468/515 (90%), Gaps = 2/515 (0%)
 Frame = +3

Query: 297  MATAAVIGLSGGKRLLCSSYHYSDIIEKFSYGCDFGSTHYQIAPTKSVIIAKKSSSNYTT 476
            MATAAVIGLSGGKRLL SSYHYSD+IEK SYG DFGSTHYQI PTKS+I AKKSS NYT 
Sbjct: 1    MATAAVIGLSGGKRLLSSSYHYSDVIEKLSYGSDFGSTHYQIVPTKSLIAAKKSS-NYT- 58

Query: 477  PTFSASDRQNQSIKALKEHVDGAPAIAEDPWF--CNSSSDLEVESSDMGYSLEALLLLQK 650
            PTF AS++QNQSIKALKEHVD AP IA D WF  CNS+ DLEVESS+MGYS+EALLLLQK
Sbjct: 59   PTFPASNQQNQSIKALKEHVDDAPTIA-DSWFQSCNSN-DLEVESSEMGYSVEALLLLQK 116

Query: 651  SMLEKQWNLSFEREVLTENSRREKSHRKVAVTCSGVSARQRRMSTKRKITGKHGSAMMQR 830
            SMLEKQWNLSFEREVLTE+S + K  +KVAVTCSGVSARQRRM+TKRK   K        
Sbjct: 117  SMLEKQWNLSFEREVLTEHSSKGKKCKKVAVTCSGVSARQRRMNTKRKTAIK-------- 168

Query: 831  PCAAMQLRSTISPELLQSRLKGYVKGVVSDELLSHAEVVKLSQKIKAGLSLDEHKSRLKE 1010
             C AMQL+S ISPELLQ RLKGYVKG+VS+ELLSHAEVV LS++IK GLSL+EHKSRLKE
Sbjct: 169  TCGAMQLKSKISPELLQHRLKGYVKGIVSEELLSHAEVVNLSERIKVGLSLEEHKSRLKE 228

Query: 1011 RLGCEPSDDQVATSLKISRAELRAKMIECSLAREKLTMSNVRLVMSIAQKYDNMGAEMSD 1190
            RLGCEPSDDQ+A SLKISR ELRA+MIEC+LAREKL MSNVRLVMSIAQKYDN+GAEM D
Sbjct: 229  RLGCEPSDDQMAISLKISRTELRARMIECTLAREKLAMSNVRLVMSIAQKYDNLGAEMGD 288

Query: 1191 LVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI 1370
            LVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERLSLI
Sbjct: 289  LVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSLI 348

Query: 1371 RNAEFRLEERGITPTIDRIAKCLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHH 1550
            RNA+FRLEERGITPTIDRIAK LNMSQKKVRNATEAISK  SLDREAFPSLNG+ G+THH
Sbjct: 349  RNAKFRLEERGITPTIDRIAKYLNMSQKKVRNATEAISKTISLDREAFPSLNGIQGETHH 408

Query: 1551 SYIADKRLENIPWNGVDEWALKDEVNKLIDVTLVEREREIIRLYYGLDKECLTWEDISKR 1730
            SYIAD R+ENIPWNGVDEWALKDEVNKLI+VTLVEREREIIRLYYGLDKE LTWEDISKR
Sbjct: 409  SYIADDRVENIPWNGVDEWALKDEVNKLINVTLVEREREIIRLYYGLDKEGLTWEDISKR 468

Query: 1731 IGLSRERVRQVGLVALEKLKHAARKKEMEAMLLKH 1835
            IGLSRERVRQVGLVALEKLKHAARK++MEAMLLKH
Sbjct: 469  IGLSRERVRQVGLVALEKLKHAARKRQMEAMLLKH 503


>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 508

 Score =  738 bits (1904), Expect = 0.0
 Identities = 387/513 (75%), Positives = 445/513 (86%)
 Frame = +3

Query: 297  MATAAVIGLSGGKRLLCSSYHYSDIIEKFSYGCDFGSTHYQIAPTKSVIIAKKSSSNYTT 476
            MATAAVIGLS GKRLL S+++YSD+ EK S   + G THYQI  TK++I+AKKSS NY  
Sbjct: 1    MATAAVIGLSAGKRLLSSTFYYSDLTEKLSSANEHGLTHYQITSTKTLIVAKKSS-NYG- 58

Query: 477  PTFSASDRQNQSIKALKEHVDGAPAIAEDPWFCNSSSDLEVESSDMGYSLEALLLLQKSM 656
            P+F +S+R  QSIKALKEHVD A A +       + +D+E ESSD+ YS+EALLLLQKSM
Sbjct: 59   PSFPSSNRNTQSIKALKEHVDTASAPSTAATQFKTFNDMEEESSDLDYSVEALLLLQKSM 118

Query: 657  LEKQWNLSFEREVLTENSRREKSHRKVAVTCSGVSARQRRMSTKRKITGKHGSAMMQRPC 836
            LEKQWNLSFER   +++  R KS +K+ VTCSGVSARQRR++ +RK   +  S    +  
Sbjct: 119  LEKQWNLSFERTDSSDSPSR-KSQKKIPVTCSGVSARQRRINIRRKNLSQ--SKFTVQAN 175

Query: 837  AAMQLRSTISPELLQSRLKGYVKGVVSDELLSHAEVVKLSQKIKAGLSLDEHKSRLKERL 1016
               QL+S +SPELLQ+RLKGYVKGVVS+ELLSHAEVV+LS+ IKAGLSL++HKSRLKERL
Sbjct: 176  VFKQLKSAVSPELLQNRLKGYVKGVVSEELLSHAEVVRLSRIIKAGLSLEDHKSRLKERL 235

Query: 1017 GCEPSDDQVATSLKISRAELRAKMIECSLAREKLTMSNVRLVMSIAQKYDNMGAEMSDLV 1196
            GC+PSD+QVATSLKISRAEL++K I CSLAREKL MSNVRLVMSIAQ+YDNMGAEM+DLV
Sbjct: 236  GCDPSDEQVATSLKISRAELQSKSIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLV 295

Query: 1197 QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRN 1376
            QGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALVENSRTLRLP HLHERL LIRN
Sbjct: 296  QGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRN 355

Query: 1377 AEFRLEERGITPTIDRIAKCLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHSY 1556
            A+ RLEE+G+TP+IDRIA+ LN+SQKKVRNATEA+SKVFSLDREAFPSLNGLPG+THHSY
Sbjct: 356  AKIRLEEKGVTPSIDRIAESLNISQKKVRNATEAVSKVFSLDREAFPSLNGLPGETHHSY 415

Query: 1557 IADKRLENIPWNGVDEWALKDEVNKLIDVTLVEREREIIRLYYGLDKECLTWEDISKRIG 1736
            IAD  LEN PW+GVD+WALKDEVNKLI++TL ERE+EIIRLYYGLD E LTWEDISKRIG
Sbjct: 416  IADNCLENNPWHGVDDWALKDEVNKLINLTLQEREQEIIRLYYGLDNESLTWEDISKRIG 475

Query: 1737 LSRERVRQVGLVALEKLKHAARKKEMEAMLLKH 1835
            LSRERVRQVGLVALEKLKHAARKK++EAML+KH
Sbjct: 476  LSRERVRQVGLVALEKLKHAARKKKLEAMLVKH 508


>ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|222862757|gb|EEF00264.1|
            predicted protein [Populus trichocarpa]
          Length = 509

 Score =  725 bits (1872), Expect = 0.0
 Identities = 379/514 (73%), Positives = 441/514 (85%)
 Frame = +3

Query: 294  IMATAAVIGLSGGKRLLCSSYHYSDIIEKFSYGCDFGSTHYQIAPTKSVIIAKKSSSNYT 473
            +MATAAVIGLS GKRLL SS++YSD+ EK S   D G T+Y  A TK+VI+AKKSS NY 
Sbjct: 1    MMATAAVIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGITYYPTATTKNVIVAKKSS-NYG 59

Query: 474  TPTFSASDRQNQSIKALKEHVDGAPAIAEDPWFCNSSSDLEVESSDMGYSLEALLLLQKS 653
             P+F +S+R + SIKALKEHVD A A +    +  +  D E ESS + YS+EALLLLQKS
Sbjct: 60   -PSFPSSNRNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKS 118

Query: 654  MLEKQWNLSFEREVLTENSRREKSHRKVAVTCSGVSARQRRMSTKRKITGKHGSAMMQRP 833
            MLEKQWNLSFER   + +S  +K+++K+ VTCSGVSARQRR++ +RK   ++ S  M + 
Sbjct: 119  MLEKQWNLSFER-TNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRK--NQNQSKFMSQS 175

Query: 834  CAAMQLRSTISPELLQSRLKGYVKGVVSDELLSHAEVVKLSQKIKAGLSLDEHKSRLKER 1013
                 LRS  SP+LLQ+RLKGYVKGVVSDE+L H EVV+LS+ I+AGLS ++HKSRLKER
Sbjct: 176  SDFKFLRSVSSPDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKER 235

Query: 1014 LGCEPSDDQVATSLKISRAELRAKMIECSLAREKLTMSNVRLVMSIAQKYDNMGAEMSDL 1193
            LGCEPSD+Q+A SL+ISRA+L++K+I+CSLAREKL MSNVRLVMSIAQKYDNMGAEM+DL
Sbjct: 236  LGCEPSDEQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADL 295

Query: 1194 VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIR 1373
            VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV+NSRTLRLP HLHERL LIR
Sbjct: 296  VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIR 355

Query: 1374 NAEFRLEERGITPTIDRIAKCLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHS 1553
            NA+ RLEE+G+TP+IDRIA+ LNMSQ+KVRNATEAISKVFSLDREAFPSLNGLPG+THHS
Sbjct: 356  NAKIRLEEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHS 415

Query: 1554 YIADKRLENIPWNGVDEWALKDEVNKLIDVTLVEREREIIRLYYGLDKECLTWEDISKRI 1733
            YIAD R EN PW+GVDEWALK+EVNKLID TL ERE+EIIRLY+GLD+ECLTWEDISKR+
Sbjct: 416  YIADNRPENNPWHGVDEWALKEEVNKLIDSTLQEREKEIIRLYHGLDQECLTWEDISKRM 475

Query: 1734 GLSRERVRQVGLVALEKLKHAARKKEMEAMLLKH 1835
            GLSRERVRQVGLVALEKLKHAARK+  EAML+KH
Sbjct: 476  GLSRERVRQVGLVALEKLKHAARKRNTEAMLVKH 509


>ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-like [Cucumis sativus]
            gi|449514942|ref|XP_004164521.1| PREDICTED: RNA
            polymerase sigma factor sigA-like [Cucumis sativus]
          Length = 508

 Score =  700 bits (1806), Expect = 0.0
 Identities = 367/515 (71%), Positives = 441/515 (85%), Gaps = 1/515 (0%)
 Frame = +3

Query: 294  IMATAAVIGLSGGKRLLCSSYHYSDIIEKFSYGCDFGSTHYQIAPTKSVIIAKKSSSNYT 473
            +MATAA+IGL   KRLL SS +YSD  EK  Y  D+     Q++ +KSV+IAK SS+N++
Sbjct: 1    MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSSSKSVVIAK-SSANFS 59

Query: 474  TPTFSASDRQNQS-IKALKEHVDGAPAIAEDPWFCNSSSDLEVESSDMGYSLEALLLLQK 650
             P + +S+R +Q  IKA+KEHV+   +   +PW  ++++  E E +++ Y++EALLLLQK
Sbjct: 60   -PRYPSSNRHSQQCIKAVKEHVETPSSPIAEPW--HNTTSWEDEETELKYTVEALLLLQK 116

Query: 651  SMLEKQWNLSFEREVLTENSRREKSHRKVAVTCSGVSARQRRMSTKRKITGKHGSAMMQR 830
            SMLEKQW+LSFE+ V T+  + EK+ +KV VTCSGVSARQRRMS+KRKI  KH    M +
Sbjct: 117  SMLEKQWSLSFEQTVSTDTPK-EKTLKKVPVTCSGVSARQRRMSSKRKIQSKH--VFMAQ 173

Query: 831  PCAAMQLRSTISPELLQSRLKGYVKGVVSDELLSHAEVVKLSQKIKAGLSLDEHKSRLKE 1010
            P  + QLR TISPELLQ+RLKGYVKG++S+ELLSHAEVV+LS+KIK GL+L+E K+RLK+
Sbjct: 174  PKISKQLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRLKQ 233

Query: 1011 RLGCEPSDDQVATSLKISRAELRAKMIECSLAREKLTMSNVRLVMSIAQKYDNMGAEMSD 1190
            RLGCEPS+DQ+A SLKISRAELR++M+E SLAREKL MSNVRLVMSIAQ+YDNMGAEM+D
Sbjct: 234  RLGCEPSEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMAD 293

Query: 1191 LVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLI 1370
            LVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERL LI
Sbjct: 294  LVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLI 353

Query: 1371 RNAEFRLEERGITPTIDRIAKCLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHH 1550
            RNA+ +L+E+GITP++DRIA+ LNMS+KKV+NATEAISKVFSLDREAFPSLNGLPG+THH
Sbjct: 354  RNAKVKLQEKGITPSLDRIAESLNMSKKKVQNATEAISKVFSLDREAFPSLNGLPGETHH 413

Query: 1551 SYIADKRLENIPWNGVDEWALKDEVNKLIDVTLVEREREIIRLYYGLDKECLTWEDISKR 1730
            SYIAD  LEN PW+G D W LK EVN+LI++TL +REREIIRLY+GLD ECLTWE+ISKR
Sbjct: 414  SYIADNCLENNPWHGTDTWILKVEVNQLINMTLGDREREIIRLYHGLDNECLTWEEISKR 473

Query: 1731 IGLSRERVRQVGLVALEKLKHAARKKEMEAMLLKH 1835
            IGLSRERVRQVGLVALEKLK AA+ ++MEAMLLKH
Sbjct: 474  IGLSRERVRQVGLVALEKLKKAAKTRKMEAMLLKH 508