BLASTX nr result

ID: Glycyrrhiza24_contig00002382 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00002382
         (312 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003590481.1| 30 kDa ribonucleoprotein [Medicago truncatul...   124   1e-26
gb|ACJ85252.1| unknown [Medicago truncatula]                          122   4e-26
ref|XP_003535181.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop...   119   2e-25
ref|NP_001240946.1| uncharacterized protein LOC100812934 [Glycin...   111   5e-23
gb|AFK37653.1| unknown [Lotus japonicus]                              105   4e-21

>ref|XP_003590481.1| 30 kDa ribonucleoprotein [Medicago truncatula]
           gi|355479529|gb|AES60732.1| 30 kDa ribonucleoprotein
           [Medicago truncatula] gi|388503166|gb|AFK39649.1|
           unknown [Medicago truncatula]
          Length = 280

 Score =  124 bits (310), Expect = 1e-26
 Identities = 68/98 (69%), Positives = 79/98 (80%), Gaps = 3/98 (3%)
 Frame = +1

Query: 28  MSTTAASLALPTLRTRKPLCSSPQCLSS--RFSLNPNFKPFSISSASLRPTLSLSCRFVS 201
           MST+A SL LP+L T+    +SPQC SS    SLNPNFKPFS SS SLRP+LS+S RF+S
Sbjct: 1   MSTSATSLVLPSLFTK----NSPQCFSSLPSLSLNPNFKPFSFSSVSLRPSLSISHRFIS 56

Query: 202 RVALSSEFDQEEDTFSNG-DTPNYSRDLRLFVGNLPFS 312
           RVA+SSEFDQEEDTF +G DTP+YS + RLFVGNLPFS
Sbjct: 57  RVAVSSEFDQEEDTFDDGDDTPSYSPNQRLFVGNLPFS 94


>gb|ACJ85252.1| unknown [Medicago truncatula]
          Length = 280

 Score =  122 bits (305), Expect = 4e-26
 Identities = 67/98 (68%), Positives = 79/98 (80%), Gaps = 3/98 (3%)
 Frame = +1

Query: 28  MSTTAASLALPTLRTRKPLCSSPQCLSS--RFSLNPNFKPFSISSASLRPTLSLSCRFVS 201
           MST+A SL LP+L T+    +SPQC SS    SLNPNFKPFS SS SLRP+LS+S RF+S
Sbjct: 1   MSTSATSLVLPSLFTK----NSPQCFSSLPSLSLNPNFKPFSFSSVSLRPSLSISHRFIS 56

Query: 202 RVALSSEFDQEEDTFSNG-DTPNYSRDLRLFVGNLPFS 312
           RVA+SSEFDQEEDTF +G DTP+YS + RLFVG+LPFS
Sbjct: 57  RVAVSSEFDQEEDTFDDGDDTPSYSPNQRLFVGSLPFS 94


>ref|XP_003535181.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
           max]
          Length = 275

 Score =  119 bits (299), Expect = 2e-25
 Identities = 64/97 (65%), Positives = 75/97 (77%), Gaps = 2/97 (2%)
 Frame = +1

Query: 28  MSTTAASLALPTL--RTRKPLCSSPQCLSSRFSLNPNFKPFSISSASLRPTLSLSCRFVS 201
           MST+AASLALPTL  RTR+PLCS PQC SS  SL PN KP SIS+  L+PT   S RFV 
Sbjct: 1   MSTSAASLALPTLTLRTRQPLCS-PQCFSSSLSLTPNNKPISISAVFLKPTTLSSSRFVP 59

Query: 202 RVALSSEFDQEEDTFSNGDTPNYSRDLRLFVGNLPFS 312
            V +SS+  QEEDTFS+GD P++S DL+LFVGNLPF+
Sbjct: 60  HVVVSSDLGQEEDTFSDGDGPSFSPDLKLFVGNLPFN 96


>ref|NP_001240946.1| uncharacterized protein LOC100812934 [Glycine max]
           gi|255639723|gb|ACU20155.1| unknown [Glycine max]
          Length = 279

 Score =  111 bits (278), Expect = 5e-23
 Identities = 65/103 (63%), Positives = 76/103 (73%), Gaps = 8/103 (7%)
 Frame = +1

Query: 28  MSTTAASLALPTL--RTRKPLCSSPQCLSSRFSLNPNFKPFSISSASLRPTLS------L 183
           MST+AASLALPTL  RTR+PLCS PQC SS  SL PN KP SIS+  L+ TLS      L
Sbjct: 1   MSTSAASLALPTLTLRTRQPLCS-PQCFSSSLSLTPNSKPISISAVFLKTTLSSSSPLSL 59

Query: 184 SCRFVSRVALSSEFDQEEDTFSNGDTPNYSRDLRLFVGNLPFS 312
           S RFV  V++    +QEEDTF +GD P++SRDL+LFVGNLPFS
Sbjct: 60  SSRFVPHVSV---LEQEEDTFGDGDGPSFSRDLKLFVGNLPFS 99


>gb|AFK37653.1| unknown [Lotus japonicus]
          Length = 302

 Score =  105 bits (262), Expect = 4e-21
 Identities = 65/98 (66%), Positives = 78/98 (79%), Gaps = 3/98 (3%)
 Frame = +1

Query: 28  MSTTAA-SLALPTLRTRKPLCSSPQCLSSRFSLNPNFKPFSISSASLRPTLSL-SCRFVS 201
           MSTT+A SLALP L+TR+PL SS Q LSS F LNPNFK  SIS+  L  TLSL S RFV+
Sbjct: 1   MSTTSATSLALPILQTRQPLGSS-QRLSSSFCLNPNFKSISISAVFLPSTLSLSSSRFVT 59

Query: 202 RVALSSEFDQEEDTFS-NGDTPNYSRDLRLFVGNLPFS 312
           RVA+SSEFDQEEDTFS + +T +++ D ++FVGNLPFS
Sbjct: 60  RVAVSSEFDQEEDTFSDDAETRSFAPDHKVFVGNLPFS 97


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