BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza24_contig00002184
         (3425 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1717   0.0  
ref|XP_002311536.1| rna-dependent RNA polymerase [Populus tricho...  1527   0.0  
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1510   0.0  
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1495   0.0  
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...  1467   0.0  

>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
          Length = 1125

 Score = 1717 bits (4446), Expect = 0.0
 Identities = 861/1124 (76%), Positives = 958/1124 (85%), Gaps = 13/1124 (1%)
 Frame = -3

Query: 3342 MGKTIEVYGFPSNVTVSLVKRFIEQYTGEETVFAIKIRQGKGRVPRAFAIIQFTSAKHAT 3163
            MGKTIE+YGFP++V VS VK F+EQYTGE TVFAIK+R GKGRVPRAFAIIQFT+A  AT
Sbjct: 1    MGKTIELYGFPTSVNVSDVKTFVEQYTGEGTVFAIKLRHGKGRVPRAFAIIQFTTANSAT 60

Query: 3162 HMLSLAD---KSLWYSNSYLKVREVERDIVPRPRTFLDSLNNVKLYFGCQISKGRISVLW 2992
             M+S A+   ++L Y  SYLK RE+ERDIVPRPR FL SL++VKL FGCQISKGR SVLW
Sbjct: 61   SMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSVLW 120

Query: 2991 KKVNDVSVDFGIGMRKWRFFLFHGDNKYKLELSYENIWKIELYQPQGEATKYLLIQLQGA 2812
            KK  DV V+FG GMRK  F   H + +YKLELSYENIWKIEL++P+ E T+YLLIQL GA
Sbjct: 121  KK-QDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNETTRYLLIQLLGA 179

Query: 2811 PRIFKMVIPTSANIYEDPLLNYFKDTPDEQWIRAIDFTPCSCIGQSSALCLELPDDQDFP 2632
            PR+F+  +PTS NI++DPL N+FKD PDEQWIRAIDFTP S IGQSSA+CLELP+ +  P
Sbjct: 180  PRVFENDVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELPNGRQLP 239

Query: 2631 NFRENFAYYEESEKQYALESGYTFSRNPDLVPIVAPPQGIEIPFDILFKVNSLVQHGYLS 2452
            NFRENFAYYEESE+QY L++G  FS+N  LVPIVAPP G++I +DILFKVNSLVQH  L+
Sbjct: 240  NFRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKISYDILFKVNSLVQHACLA 299

Query: 2451 GSGLDNKFYHMVDPRKVNLEFIEHALEKMYYSKDFCYEPTSWLIDQYKRYLSSNNPPRSP 2272
            G  LD  FY +VDPR++  EFIE+ALEK+YYSK+FCYEPT WL DQYK YL S N PRSP
Sbjct: 300  GPALDGDFYRLVDPRRMPREFIEYALEKIYYSKEFCYEPTKWLTDQYKTYLESKNHPRSP 359

Query: 2271 MISLDTGLVYVRRVQITPCKVYFSGPEINVSNRVLRHFNEHINNFLRVSFVDEELDKLYS 2092
             ISLDTGLVYVRRVQITPCKVYF GPE+NVSNRVLRHF EHI+NFLRVSFVDEELDKL+S
Sbjct: 360  AISLDTGLVYVRRVQITPCKVYFCGPEMNVSNRVLRHFREHIDNFLRVSFVDEELDKLFS 419

Query: 2091 TDLSSRSDGSKTEIYNRVLSILRNGIIIGDKKFEFLAFSSSQLRENSLWMFAPTTTGCTA 1912
            TDLSSRS   KTEIY R+LSIL+NGI++GDKKFEFLAFSSSQLRENSLWMFAPT TGCTA
Sbjct: 420  TDLSSRSQNKKTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLRENSLWMFAPTETGCTA 479

Query: 1911 AHIREWMGDFRMIRNVAKYAARLGQSFGSSTETLSVSRSEIEIIPDV-TIEHGGIDYVFS 1735
            A+IR+WMG+F  IRNVAKYAARLGQSFGSSTETLSV R E+EIIPDV  + + G +YVFS
Sbjct: 480  AYIRKWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEIIPDVKKLTYDGNEYVFS 539

Query: 1734 DGIGKISLDFARKVAKKCGHNSTPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMHKYDSD 1555
            DGIGKISL+FA+KVAKKCG++ TPSAFQIRY GYKGVVAVDP S  KLSLRKSM KYDSD
Sbjct: 540  DGIGKISLEFAQKVAKKCGYDCTPSAFQIRYGGYKGVVAVDPKSCYKLSLRKSMRKYDSD 599

Query: 1554 NTKLDVLACSKIQACYLNRQLITLLSTLGVRDSVFEKKQGEAVDQLNTMLTDSLKAQEAL 1375
            NTKLDVLA SK Q CYLNRQLI+LLSTLG++D VFEKKQ E V+QLNT+LTDSLKAQE L
Sbjct: 600  NTKLDVLARSKFQPCYLNRQLISLLSTLGIKDDVFEKKQRETVNQLNTILTDSLKAQEVL 659

Query: 1374 DLMSAGEITNILKEMLICGYKPNVEPFLSMMLQTFRASKLLDLRQKTRIVIPMGRAMMGC 1195
            DLMSAGEITN+LKEMLICGYKPN EPFLSMMLQTFRASKLL+LR K+RI IP GRAMMGC
Sbjct: 660  DLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRASKLLELRLKSRIFIPKGRAMMGC 719

Query: 1194 LDETRTLEYGQVFVHFSKNEP--------GRSLSKSYIVTGKVVVAKNPCLYPGDVRVLK 1039
            LDETRTLEYGQVFV FS N             L K+Y+V GKVVVAKNPCL+PGDVRVL+
Sbjct: 720  LDETRTLEYGQVFVQFSNNRLQNLSDDFFSYDLPKNYMVKGKVVVAKNPCLHPGDVRVLQ 779

Query: 1038 AVNVPALHHMVDCVVFPQKGFRPHTNECSGSDLDGDIYFVCWDPELIPHKTIEPMDYTPA 859
            AV+VP L+HMVDCVVFPQKG RPH NECSGSDLDGDIYFVCWD ELIP + I+PMDYT  
Sbjct: 780  AVDVPDLYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDHELIPSRPIDPMDYTAP 839

Query: 858  PTTQLDHDVMIEEVEEYFTNYILNDSLGIIANAHTVFADRESEKAMSEPCVELAKLFSTA 679
             T +LDHDVMIEEVEEYF NYI+NDSLGIIANAHTVFAD+E  KAMS+ CV+LA+LFSTA
Sbjct: 840  ATVELDHDVMIEEVEEYFANYIVNDSLGIIANAHTVFADKEHLKAMSDQCVKLARLFSTA 899

Query: 678  VDFPKTGVPAVIPQKLYVKEYPDFMEKPDKPTYQSPNVIGKLFREVQGISTSAGFITSFT 499
            VDFPKTGVPAVIP +L+VKEYPDFMEKPDKPTY+S NVIGKLFREV+ ISTSAG ITSFT
Sbjct: 900  VDFPKTGVPAVIPPELHVKEYPDFMEKPDKPTYKSHNVIGKLFREVKEISTSAGSITSFT 959

Query: 498  REVARRSYDSDMEFDGFMDYVDDAFHHKSNYDYKLGNLMDYYGINTEAEILGGNIMKMSK 319
            + VAR SYD +ME DGFMDYVDDAF+HK+NYDYKLGNLMDYYGI TEAEILGGNIMKMSK
Sbjct: 960  KLVARDSYDHEMEVDGFMDYVDDAFYHKTNYDYKLGNLMDYYGIKTEAEILGGNIMKMSK 1019

Query: 318  SFTKKRDAEAINMAVKSLRKEARTWFN-XXXXXXXXXXXDAYAKASAWYYVTYHPSYWGC 142
            SF K+RDAEAINMAV+SLRKEAR WFN            D YAKASAWY+VTYHPSYWGC
Sbjct: 1020 SFNKRRDAEAINMAVRSLRKEARAWFNENSSGDVDSGSSDVYAKASAWYHVTYHPSYWGC 1079

Query: 141  YNEGMGRDHYISFPWCVYPQLVQIKKEKARMRMYTDLSIEQSFS 10
            YNEGM RDHY+SF WCVYP LVQIKKEK  +R     S+E SFS
Sbjct: 1080 YNEGMNRDHYLSFSWCVYPLLVQIKKEKLSIRR---SSLEYSFS 1120


>ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1133

 Score = 1527 bits (3954), Expect = 0.0
 Identities = 760/1132 (67%), Positives = 908/1132 (80%), Gaps = 18/1132 (1%)
 Frame = -3

Query: 3342 MGKTIEVYGFPSNVTVSLVKRFIEQYTGEETVFAIKIRQGKGRVPRAFAIIQFTSAKHAT 3163
            M KT++V GFPS+ T   V+ F+E +TG  TV A+KIR+ +    R +AI+QFT+ + A 
Sbjct: 1    MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGARKYAIVQFTTTRAAE 60

Query: 3162 HMLSLADKSLWYSNSYLKVREVERDIVPRPRTFLDSLNNVKLYFGCQISKGRISVLWKKV 2983
             ++SLA+  LWY +SYL  R ++RDI+P+PR+FL ++ +V L+FG Q SK + S +W   
Sbjct: 61   QIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWSG- 119

Query: 2982 NDVSVDFGIGMRKWRFFLFHGDNKYKLELSYENIWKIELYQPQGEATKYLLIQLQGAPRI 2803
            N+VSV+FG+GMRK  FFL H   +YKL L +ENIW+IEL++P+G+  KYLLIQL GAPRI
Sbjct: 120  NNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRI 179

Query: 2802 FKMVIPTSANIYEDPLLNYFKDTPDEQWIRAIDFTPCSCIGQSSALCLELPDDQDFPNFR 2623
            ++  +P+S+N++EDPLLNYF+D PDEQW+R  DFTP   IG SS+LCLELP+    PNF 
Sbjct: 180  YERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNFN 239

Query: 2622 ENFAYYEESEKQYALESGYTFSRNPDLVPIVAPPQGIEIPFDILFKVNSLVQHGYLSGSG 2443
            ENF YY+E+E  + LESG TFSRNPDLVPIV P  G+ +P++ILF+VN LVQ+G L+GS 
Sbjct: 240  ENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSM 299

Query: 2442 LDNKFYHMVDPRKVNLEFIEHALEKMYYSKDFCYEPTSWLIDQYKRYLSSNNPPRSPMIS 2263
            LD+ FY +VDP ++ +  IE+ALEK+Y+ K+ CYEP+ W  +QYK+YL+S NPPRSP++S
Sbjct: 300  LDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVLS 359

Query: 2262 LDTGLVYVRRVQITPCKVYFSGPEINVSNRVLRHFNEHINNFLRVSFVDEELDKLYSTDL 2083
            LD GLVYV +VQITPCKV+F GPE+NVSNRVLR + E I+NFLRVSFVDEEL+K++STD+
Sbjct: 360  LDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTDV 419

Query: 2082 S----SRSDGSKTEIYNRVLSILRNGIIIGDKKFEFLAFSSSQLRENSLWMFAPTTTGCT 1915
            S    SR++  +T IYNR+LS L+NGI+IGDKKFEFLAFSSSQLRENS WMFA +  G T
Sbjct: 420  SPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFA-SRLGLT 478

Query: 1914 AAHIREWMGDFRMIRNVAKYAARLGQSFGSSTETLSVSRSEIEIIPDVTIEHGGIDYVFS 1735
            AA IR WMG F  IRNVA+YAARLGQSFGSSTETLSVS  EIEIIPD+ +  GG  Y+FS
Sbjct: 479  AADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLFS 538

Query: 1734 DGIGKISLDFARKVAKKCGHNS-TPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMHKYDS 1558
            DGIGKIS +FARKVA KCG    TPSAFQIRYAGYKGVVAVDPTSS KLSLR+SM KY+S
Sbjct: 539  DGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYES 598

Query: 1557 DNTKLDVLACSKIQACYLNRQLITLLSTLGVRDSVFEKKQGEAVDQLNTMLTDSLKAQEA 1378
            +NTKLDVLA SK Q C+LNRQLITLLSTLGV D  FE+KQ EAVDQL+ MLTD L+AQEA
Sbjct: 599  ENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEA 658

Query: 1377 LDLMSAGEITNILKEMLICGYKPNVEPFLSMMLQTFRASKLLDLRQKTRIVIPMGRAMMG 1198
            L+LMS GE TNILKEML+CGY+P+ EPFLSMMLQTFRASKLL+LR KTRI IP GR+MMG
Sbjct: 659  LELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMG 718

Query: 1197 CLDETRTLEYGQVFVHFSKNE-----------PGRSLSKSYIVTGKVVVAKNPCLYPGDV 1051
            CLDETRTLE+GQVFV FS +              R   + Y++ G VVVAKNPCL+PGD+
Sbjct: 719  CLDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLHPGDL 778

Query: 1050 RVLKAVNVPALHHMVDCVVFPQKGFRPHTNECSGSDLDGDIYFVCWDPELIPHKTIEPMD 871
            R+LKAV+VPALHHMVDCVVFPQKG RPH NECSGSDLDGDIYFVCWDPELIP + I PMD
Sbjct: 779  RILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQISPMD 838

Query: 870  YTPAPTTQLDHDVMIEEVEEYFTNYILNDSLGIIANAHTVFADRESEKAMSEPCVELAKL 691
            YTP P  QLDHDV IEEVEEYFTNYI+NDSLG+IANAHT  AD+ES KAMSEPCVELA+ 
Sbjct: 839  YTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVELARK 898

Query: 690  FSTAVDFPKTGVPAVIPQKLYVKEYPDFMEKPDKPTYQSPNVIGKLFREVQGISTSAGFI 511
            FS AVDFPKTGVPA IP  L  +EYPDFMEKPDKP+Y+S NVIGKLFREV+ I+     I
Sbjct: 899  FSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSI 958

Query: 510  TSFTREVARRSYDSDMEFDGFMDYVDDAFHHKSNYDYKLGNLMDYYGINTEAEILGGNIM 331
             SFT +VAR+ YD DME DGF DY+DDAF++KSNYDYKLGNLM+YYGI TEAE+L G+ M
Sbjct: 959  RSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSFM 1018

Query: 330  KMSKSFTKKRDAEAINMAVKSLRKEARTWFNXXXXXXXXXXXDAYAKASAWYYVTYHPSY 151
            KMSKSFTKKRDAEAI MAV+SL+KEAR+WFN           D  AKASAWY+VTYH +Y
Sbjct: 1019 KMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHNY 1078

Query: 150  WGCYNEGMGRDHYISFPWCVYPQLVQIK-KEKARMRMYTDL-SIEQSFSRGL 1
            WGCYNEGM RDH++SFPWCVY +L+QIK +  AR+R    L S+E+ FSRGL
Sbjct: 1079 WGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLILPSVERQFSRGL 1130


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1510 bits (3910), Expect = 0.0
 Identities = 757/1116 (67%), Positives = 895/1116 (80%), Gaps = 2/1116 (0%)
 Frame = -3

Query: 3342 MGKTIEVYGFPSNVTVSLVKRFIEQYTGEETVFAIKIRQGKGRVPRAFAIIQFTSAKHAT 3163
            MGKTI+VYGF S+V+   VK F+E YTG ETV+A+KIRQ K +  RAFAI+QFT +  A 
Sbjct: 1    MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHK-KSGRAFAIVQFTRSSDAG 59

Query: 3162 HMLSLADKSLWYSNSYLKVREVERDIVPRPRTFLDSLNNVKLYFGCQISKGRISVLWKKV 2983
             ++ LA++ L+Y  SYLK RE+E DIVP+PR FL ++  V + FGCQ+S+ +  VLWK  
Sbjct: 60   LIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWKAD 119

Query: 2982 NDVSVDFGIGMRKWRFFLFHGDNKYKLELSYENIWKIELYQPQGEATKYLLIQLQGAPRI 2803
            N V+++FG GMRK  F L +  +KYKLEL YENIW+IEL  P  + +K+LLIQL GAPRI
Sbjct: 120  N-VTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRI 178

Query: 2802 FKMVIPTSANIYEDPLLNYFKDTPDEQWIRAIDFTPCSCIGQSSALCLELPDDQDFPNFR 2623
            ++  +P S  +++DPLLNYFKD PD+QW+R  DFT  +CIGQSS L LELP +   PNFR
Sbjct: 179  YEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLPNFR 238

Query: 2622 ENFAYYEESEKQYALESGYTFSRNPDLVPIVAPPQGIEIPFDILFKVNSLVQHGYLSGSG 2443
            ENFAYY+E+E +  LESG ++S N  LVPIV P + I++PF+ILFKVN LVQ+G + G  
Sbjct: 239  ENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPA 298

Query: 2442 LDNKFYHMVDPRKVNLEFIEHALEKMYYSKDFCYEPTSWLIDQYKRYLSSNNPPRSPMIS 2263
            LD+ FY +VDP +++  +I+HALEK+YY ++ CYEP+ WL ++YK +  S     SP IS
Sbjct: 299  LDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTIS 358

Query: 2262 LDTGLVYVRRVQITPCKVYFSGPEINVSNRVLRHFNEHINNFLRVSFVDEELDKLYSTDL 2083
            LD GLVYVRRVQITP +VYF GPEINVSNRVLR F+  I+NFLR+SFVDEEL+K++ST++
Sbjct: 359  LDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNV 418

Query: 2082 SSRSDGSKTEIYNRVLSILRNGIIIGDKKFEFLAFSSSQLRENSLWMFAPTTTGCTAAHI 1903
             +R  G +T IY R+LS LRNGI+IG+K+FEFLAFSSSQLRENS WMFA +  G TAA I
Sbjct: 419  QAR--GRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFA-SRKGLTAADI 475

Query: 1902 REWMGDFRMIRNVAKYAARLGQSFGSSTETLSVSRSEIEIIPDVTIEHGGIDYVFSDGIG 1723
            R WMG+F  IRNVAKYAARLGQSF SSTETLSVS+ EI +IPD+ I   GI YVFSDGIG
Sbjct: 476  RSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFSDGIG 535

Query: 1722 KISLDFARKVAKKCG-HNSTPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMHKYDSDNTK 1546
            KIS +FA+KVA KC     TPSAFQIR  G+KGVVA+DPTSS KLSLRKSM KY+S+NTK
Sbjct: 536  KISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESENTK 595

Query: 1545 LDVLACSKIQACYLNRQLITLLSTLGVRDSVFEKKQGEAVDQLNTMLTDSLKAQEALDLM 1366
            LDVLA SK Q C+LNRQLITLLSTLGV D  FEKKQ E VDQLN +LTD L+AQEAL+LM
Sbjct: 596  LDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQEALELM 655

Query: 1365 SAGEITNILKEMLICGYKPNVEPFLSMMLQTFRASKLLDLRQKTRIVIPMGRAMMGCLDE 1186
            S GE TNILKEML+CGYKP+ EPFLSMML+TFRASKLL+LR K RI +  GR+MMGCLDE
Sbjct: 656  SPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCLDE 715

Query: 1185 TRTLEYGQVFVHFSKNEPGRSLSKSYIVTGKVVVAKNPCLYPGDVRVLKAVNVPALHHMV 1006
            TRTL YGQVFV FS    G    + +IV GKV+VAKNPCL+PGDVRVL+AVNVP LHHMV
Sbjct: 716  TRTLNYGQVFVQFS----GSRSERRFIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMV 771

Query: 1005 DCVVFPQKGFRPHTNECSGSDLDGDIYFVCWDPELIPHKTIEPMDYTPAPTTQLDHDVMI 826
            DCVVFPQKG RPH NECSGSDLDGD+YFVCWDPELIP+K I+PMDY+PA TT+LDH+V I
Sbjct: 772  DCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYSPASTTKLDHEVTI 831

Query: 825  EEVEEYFTNYILNDSLGIIANAHTVFADRESEKAMSEPCVELAKLFSTAVDFPKTGVPAV 646
            EE+EEYFTNYI+NDSLGII+NAHT FADRE +KAMS PC+ELAKLFS AVDFPKTGVPA 
Sbjct: 832  EEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCLELAKLFSIAVDFPKTGVPAE 891

Query: 645  IPQKLYVKEYPDFMEKPDKPTYQSPNVIGKLFREVQGISTSAGFITSFTREVARRSYDSD 466
            IPQ+L VKEYPDFMEKPDKP+YQS NVIGKLFREV+ ++ +   I   TRE  +R YD D
Sbjct: 892  IPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNECSIKFLTREKMQRFYDPD 951

Query: 465  MEFDGFMDYVDDAFHHKSNYDYKLGNLMDYYGINTEAEILGGNIMKMSKSFTKKRDAEAI 286
            ME +GF DY+DDAF HKS YDYKLGNLMDYYG+ TEAEILGG IMKMS+SFTKKRDAEAI
Sbjct: 952  MEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILGGGIMKMSRSFTKKRDAEAI 1011

Query: 285  NMAVKSLRKEARTWFNXXXXXXXXXXXDAYAKASAWYYVTYHPSYWGCYNEGMGRDHYIS 106
            +MAV+SLRKEAR+WFN           DAYAKASAWYYVTYHPSYWG YNEGM RDH++S
Sbjct: 1012 SMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHPSYWGQYNEGMNRDHFLS 1071

Query: 105  FPWCVYPQLVQIKKEKARMRMYTDL-SIEQSFSRGL 1
            FPWCVY +L+QIKKEKA +R   DL S+E  F RGL
Sbjct: 1072 FPWCVYDKLIQIKKEKAAVREALDLSSLEHRFQRGL 1107


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1495 bits (3871), Expect = 0.0
 Identities = 749/1115 (67%), Positives = 890/1115 (79%), Gaps = 2/1115 (0%)
 Frame = -3

Query: 3342 MGKTIEVYGFPSNVTVSLVKRFIEQYTGEETVFAIKIRQGKGRVPRAFAIIQFTSAKHAT 3163
            MGKTI+VYGF S+V+   VK F+E YTG ETV+A+KIRQ K +  RAFAI+QFT +  A 
Sbjct: 1    MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHK-KSGRAFAIVQFTRSSDAG 59

Query: 3162 HMLSLADKSLWYSNSYLKVREVERDIVPRPRTFLDSLNNVKLYFGCQISKGRISVLWKKV 2983
             ++ LA++ L+Y  SYLK RE+E DIVP+PR FL ++  V + F C +S+ +  VLWK  
Sbjct: 60   LIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWKAD 119

Query: 2982 NDVSVDFGIGMRKWRFFLFHGDNKYKLELSYENIWKIELYQPQGEATKYLLIQLQGAPRI 2803
            N V+++FG GMRK  F L +  +KYKLEL YENIW+IEL  P  + +K+LLIQL GAPRI
Sbjct: 120  N-VTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRI 178

Query: 2802 FKMVIPTSANIYEDPLLNYFKDTPDEQWIRAIDFTPCSCIGQSSALCLELPDDQDFPNFR 2623
            ++  +P S  +++DPLLNYFKD PD+QW+R  DFT  +CIGQSS LCLELP +   PNFR
Sbjct: 179  YEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPNFR 238

Query: 2622 ENFAYYEESEKQYALESGYTFSRNPDLVPIVAPPQGIEIPFDILFKVNSLVQHGYLSGSG 2443
            ENFAYY+E+E +  LESG ++S N  LVPIV P + I++PF+ILFKVN LVQ+G + G  
Sbjct: 239  ENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPA 298

Query: 2442 LDNKFYHMVDPRKVNLEFIEHALEKMYYSKDFCYEPTSWLIDQYKRYLSSNNPPRSPMIS 2263
            LD+ FY +VDP +++  +I+HALEK+YY ++ CYEP+ WL ++YK +  S     SP IS
Sbjct: 299  LDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTIS 358

Query: 2262 LDTGLVYVRRVQITPCKVYFSGPEINVSNRVLRHFNEHINNFLRVSFVDEELDKLYSTDL 2083
            LD GLVYVRRVQITP +VYF GPEINVSNRVLR F+  I+NFLR+SFVDEEL+K++ST++
Sbjct: 359  LDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNV 418

Query: 2082 SSRSDGSKTEIYNRVLSILRNGIIIGDKKFEFLAFSSSQLRENSLWMFAPTTTGCTAAHI 1903
             +R  G +T IY R+LS LRNGI+IG+K+FEFLAFSSSQLRENS WMFA +  G TAA I
Sbjct: 419  QAR--GRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFA-SRKGLTAADI 475

Query: 1902 REWMGDFRMIRNVAKYAARLGQSFGSSTETLSVSRSEIEIIPDVTIEHGGIDYVFSDGIG 1723
            R WMG+F  IRNVAKYAARLGQSF SSTETLSVS+ EI +IPD+ I   GI YVF DGIG
Sbjct: 476  RSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFPDGIG 535

Query: 1722 KISLDFARKVAKKCG-HNSTPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMHKYDSDNTK 1546
            KIS +FA+KVA KC     TPSAFQIR  G+KGVVA+DPTSS KLSLRKSM KY+S+NTK
Sbjct: 536  KISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESENTK 595

Query: 1545 LDVLACSKIQACYLNRQLITLLSTLGVRDSVFEKKQGEAVDQLNTMLTDSLKAQEALDLM 1366
            LDVLA SK Q C+LNRQLITLLSTLGV D  FEKKQ E VDQLN +LTD L+AQEAL+LM
Sbjct: 596  LDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQEALELM 655

Query: 1365 SAGEITNILKEMLICGYKPNVEPFLSMMLQTFRASKLLDLRQKTRIVIPMGRAMMGCLDE 1186
            S GE TNILKEML+CGYKP+ EPFLSMML+TFRASKLL+LR K RI +  GR+MMGCLDE
Sbjct: 656  SPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCLDE 715

Query: 1185 TRTLEYGQVFVHFSKNEPGRSLSKSYIVTGKVVVAKNPCLYPGDVRVLKAVNVPALHHMV 1006
            TRTL YGQVFV FS    G    + +IV GKV+VAKNPCL+PGDVRVL+AVNVP LHHMV
Sbjct: 716  TRTLNYGQVFVQFS----GSRSERRFIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMV 771

Query: 1005 DCVVFPQKGFRPHTNECSGSDLDGDIYFVCWDPELIPHKTIEPMDYTPAPTTQLDHDVMI 826
            DCVVFPQKG RPH NECSGSDLDGD+YFVCWDPELIP+K I+PMDY+PA TT+LDH+V I
Sbjct: 772  DCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYSPASTTKLDHEVTI 831

Query: 825  EEVEEYFTNYILNDSLGIIANAHTVFADRESEKAMSEPCVELAKLFSTAVDFPKTGVPAV 646
            EE+EEYFTNYI+NDSLGII+NAHT FADRE  KAMS PC+ELAKLFS AVDFPKTGVPA 
Sbjct: 832  EEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLELAKLFSIAVDFPKTGVPAE 891

Query: 645  IPQKLYVKEYPDFMEKPDKPTYQSPNVIGKLFREVQGISTSAGFITSFTREVARRSYDSD 466
            IPQ+L VKE+PDFMEKPDKP+YQS NVIGKLFREV+ ++ +   I   TRE  +R YD D
Sbjct: 892  IPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNECSIKLLTREKMKRFYDPD 951

Query: 465  MEFDGFMDYVDDAFHHKSNYDYKLGNLMDYYGINTEAEILGGNIMKMSKSFTKKRDAEAI 286
            ME +GF+DY+DDAF +KS YDYKLGNLMDYYG+ TEAEIL G IMKMS+SFTKKRDAE+I
Sbjct: 952  MEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSGGIMKMSRSFTKKRDAESI 1011

Query: 285  NMAVKSLRKEARTWFNXXXXXXXXXXXDAYAKASAWYYVTYHPSYWGCYNEGMGRDHYIS 106
            +MAV+SLRKEAR+WFN           DAYAKASAWYYVTYH SYWG YNEGM RDH++S
Sbjct: 1012 SMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHHSYWGQYNEGMNRDHFLS 1071

Query: 105  FPWCVYPQLVQIKKEKARMRMYTDL-SIEQSFSRG 4
            FPWCVY +L+QIKKEKA +R   DL S+E  F RG
Sbjct: 1072 FPWCVYDKLIQIKKEKAALREALDLSSLEHRFQRG 1106


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score = 1467 bits (3798), Expect = 0.0
 Identities = 738/1129 (65%), Positives = 877/1129 (77%), Gaps = 15/1129 (1%)
 Frame = -3

Query: 3342 MGKTIEVYGFPSNVTVSLVKRFIEQYTGEETVFAIKIRQGKGRVPRAFAIIQFTSAKHAT 3163
            M KTI+VYGFPS V+   +K F+E+YTGE T+ A++I+Q +       A +QFTS + A 
Sbjct: 1    MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGASMTHAKVQFTSFELAE 60

Query: 3162 HMLSLADKSLWYSNSYLKVREVERDIVPRPRTFLDSLNNVKLYFGCQISKGRISVLWKKV 2983
             +++L  K +WY  +YLK RE++ DI+P+PR FL S++ + L+FGCQ+S  R  VLWK +
Sbjct: 61   FIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWKAI 120

Query: 2982 NDVSVDFGIGMRKWRFFLFHGDNKYKLELSYENIWKIELYQPQGEATKYLLIQLQGAPRI 2803
            N VSV FG G+RK+ FFL HG  +YKLELSYENIW+I+L  P+G+ TK+LLIQL GAP+I
Sbjct: 121  N-VSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQI 179

Query: 2802 FKMVIPTSANIYEDPLLNYFKDTPDEQWIRAIDFTPCSCIGQSSALCLELPDDQDFPNFR 2623
            ++  +P         L  YFK+ PD+QW+R IDFTP   IGQS ALCLELP     PNFR
Sbjct: 180  YEKDVPV--------LSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFR 231

Query: 2622 ENFAYYEESEKQYALESGYTFSRNPDLVPIVAPPQGIEIPFDILFKVNSLVQHGYLSGSG 2443
            ENFAYY+E++ ++ LESG ++S N  LVPI+ PPQG  +PF ILFK+N+LVQ+G LSG  
Sbjct: 232  ENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSGPT 291

Query: 2442 LDNKFYHMVDPRKVNLEFIEHALEKMYYSKDFCYEPTSWLIDQYKRYLSSNNPPRSPMIS 2263
            LD  F+ +VDP +  + FIEHALEK+Y+ K+ CYEP  WL +QY+ Y+       SP IS
Sbjct: 292  LDTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTYVKKP-VAGSPAIS 350

Query: 2262 LDTGLVYVRRVQITPCKVYFSGPEINVSNRVLRHFNEHINNFLRVSFVDEELDKLYSTDL 2083
            LDTGLVYVRRVQITPCKVYF GPE+NVSNRVLR++ E I+NFLRVSF+DE L+K++ST +
Sbjct: 351  LDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHSTVI 410

Query: 2082 SSR--SDGSKTEIYNRVLSILRNGIIIGDKKFEFLAFSSSQLRENSLWMFAPTTTGCTAA 1909
            S R   +G +T +Y R+LSIL+NGI+IGDKKF+FLAFSSSQLR+NS WMFA +  G TAA
Sbjct: 411  SPRMSKEGRRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFA-SRPGLTAA 469

Query: 1908 HIREWMGDFRMIRNVAKYAARLGQSFGSSTETLSVSRSEIEIIPDVTIEHGGIDYVFSDG 1729
             IR WMGDF  IRNVAKYAARLGQSF SS ETL V++ EIE IPD+ I  G   YVFSDG
Sbjct: 470  EIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYVFSDG 529

Query: 1728 IGKISLDFARKVAKKCG-HNSTPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMHKYDSDN 1552
            IGKIS   A +VA KCG  +STPSAFQIRY GYKGVVAVDPTSS KLSLRKSM KY+SDN
Sbjct: 530  IGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESDN 589

Query: 1551 TKLDVLACSKIQACYLNRQLITLLSTLGVRDSVFEKKQGEAVDQLNTMLTDSLKAQEALD 1372
            T LDVLA SK Q  +LNRQLITLLSTLGV+D VFEKKQ  AVDQL+T+L D + AQEAL+
Sbjct: 590  TNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALE 649

Query: 1371 LMSAGEITNILKEMLICGYKPNVEPFLSMMLQTFRASKLLDLRQKTRIVIPMGRAMMGCL 1192
            LMS GE TN+LKEML+CGYKP+ EPFLSMMLQTFRA+KLL+LR KTRI +P GR+MMGCL
Sbjct: 650  LMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCL 709

Query: 1191 DETRTLEYGQVFVHFSKNEPGRSLSKS------------YIVTGKVVVAKNPCLYPGDVR 1048
            DETRTLEYG+VFV  S     +S   S            +I+ GK+VVAKNPCL+PGDVR
Sbjct: 710  DETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNPCLHPGDVR 769

Query: 1047 VLKAVNVPALHHMVDCVVFPQKGFRPHTNECSGSDLDGDIYFVCWDPELIPHKTIEPMDY 868
            VL AVNVP LHHMVDCVVFPQKG RPH NECSGSDLDGDIYFVCWD +LIP + I PMDY
Sbjct: 770  VLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINPMDY 829

Query: 867  TPAPTTQLDHDVMIEEVEEYFTNYILNDSLGIIANAHTVFADRESEKAMSEPCVELAKLF 688
            TPAPT  LDHDVMIEEVEEYFTNYI+NDSLGIIANAHTVFAD+E +KA  +PC ELAKLF
Sbjct: 830  TPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLF 889

Query: 687  STAVDFPKTGVPAVIPQKLYVKEYPDFMEKPDKPTYQSPNVIGKLFREVQGISTSAGFIT 508
            S AVDFPKTGVPA IP+ L VKEYPDFMEK DKPTY+S +VIGKLFREV+ I+     I 
Sbjct: 890  SIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIR 949

Query: 507  SFTREVARRSYDSDMEFDGFMDYVDDAFHHKSNYDYKLGNLMDYYGINTEAEILGGNIMK 328
            SFTR+VAR+SYD DME  GF DYV DAF++KS YDYKLGNLMDYYGI TE+EIL G+IM+
Sbjct: 950  SFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMR 1009

Query: 327  MSKSFTKKRDAEAINMAVKSLRKEARTWFNXXXXXXXXXXXDAYAKASAWYYVTYHPSYW 148
            MSKSF +++DAEAI +AVKSLRKEARTWFN           D YAKASAWY+VTYHP YW
Sbjct: 1010 MSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYW 1069

Query: 147  GCYNEGMGRDHYISFPWCVYPQLVQIKKEKARMRMYTDLSIEQSFSRGL 1
            GCYNEGM RDH++SFPWCVY +L+  K++K   R     S+E+  S+GL
Sbjct: 1070 GCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSGRSLHLSSLERRLSQGL 1118