BLASTX nr result
ID: Glycyrrhiza24_contig00000038
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza24_contig00000038
(2053 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_001242531.1| ribulose bisphosphate carboxylase/oxygenase ... 740 0.0
ref|NP_001240152.1| ribulose bisphosphate carboxylase/oxygenase ... 737 0.0
ref|XP_003616450.1| Ribulose-1 5-bisphosphate carboxylase/oxygen... 724 0.0
ref|XP_002282236.1| PREDICTED: ribulose bisphosphate carboxylase... 729 0.0
emb|CAN83893.1| hypothetical protein VITISV_039112 [Vitis vinifera] 728 0.0
>ref|NP_001242531.1| ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Glycine max]
gi|290766483|gb|ADD60244.1| rubisco activase [Glycine
max]
Length = 478
Score = 740 bits (1910), Expect(2) = 0.0
Identities = 377/459 (82%), Positives = 395/459 (86%), Gaps = 3/459 (0%)
Frame = +2
Query: 242 MAASVSTVGAV-KTPLSLNGSGAGTSVPSSAFFGTSLKKVTSSRLPNAKVSSGSFKIVAA 418
MAASVST+GAV + PLSLN S AG SVPSSAFFGTSLKKVT+SR+PN K+SSGSFKIVAA
Sbjct: 1 MAASVSTIGAVNRAPLSLNSSEAGDSVPSSAFFGTSLKKVTASRVPNVKISSGSFKIVAA 60
Query: 419 E--IDEDKQTEKDRWKGLAYDISDDQQDITRGKGMVDSLFQAPQQAGTHYAVMSSYEYIS 592
E IDE +QT KDRWKGLAYDISDDQQDITRGKGMVDSLFQAPQ+ GTHYAVMSS+EY+S
Sbjct: 61 EKEIDEQQQTNKDRWKGLAYDISDDQQDITRGKGMVDSLFQAPQETGTHYAVMSSFEYLS 120
Query: 593 TGLREYNLDNTMDGLYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCE 772
TGL++YNLDN MDG YIAPAFMDKLV HI+KNFMTLPNIKVPLILGIWGGKGQGKSFQCE
Sbjct: 121 TGLKQYNLDNNMDGFYIAPAFMDKLVAHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCE 180
Query: 773 LVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 952
LVFAKMGI PIMM AGELESGNAGEPAKLIRQRYREAADII KGKMCCLFINDLD GAGR
Sbjct: 181 LVFAKMGINPIMMGAGELESGNAGEPAKLIRQRYREAADIISKGKMCCLFINDLDVGAGR 240
Query: 953 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR 1132
+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNK+ENPRVPIIVTGNDFSTLYAPLIR
Sbjct: 241 LGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENPRVPIIVTGNDFSTLYAPLIR 300
Query: 1133 DGRMEKFYWAPTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVDT 1312
DGRMEKFYWAPTR LVDT
Sbjct: 301 DGRMEKFYWAPTR--------------------DDRVGVCKGIFRTDNVPEDEIVKLVDT 340
Query: 1313 FPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFEQPKMTLDKLLEY 1492
FPGQSIDFFGALRARVYDDEVRKWISGVGVD +GKKLVNSKEGPPTF+QPKMTL KLLEY
Sbjct: 341 FPGQSIDFFGALRARVYDDEVRKWISGVGVDLIGKKLVNSKEGPPTFDQPKMTLSKLLEY 400
Query: 1493 GNMLVQEQENVKRVQLADKYLSEAALGDANEDAIKRGAF 1609
GNMLVQEQENVKRVQLADKYL+EAALGDAN+DAIKRG F
Sbjct: 401 GNMLVQEQENVKRVQLADKYLNEAALGDANQDAIKRGTF 439
Score = 48.5 bits (114), Expect(2) = 0.0
Identities = 20/25 (80%), Positives = 21/25 (84%)
Frame = +1
Query: 1666 VPEGCIDPNASNLDPTTRSCDGTCV 1740
VPEGC DPNASN DPT RS DGTC+
Sbjct: 451 VPEGCTDPNASNFDPTARSDDGTCL 475
>ref|NP_001240152.1| ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Glycine max]
gi|290766479|gb|ADD60242.1| alpha-form rubisco activase
[Glycine max] gi|290766489|gb|ADD60247.1| alpha-form
rubisco activase [Glycine max]
Length = 478
Score = 737 bits (1903), Expect(2) = 0.0
Identities = 377/459 (82%), Positives = 394/459 (85%), Gaps = 3/459 (0%)
Frame = +2
Query: 242 MAASVSTVGAVK-TPLSLNGSGAGTSVPSSAFFGTSLKKVTSSRLPNAKVSSGSFKIVAA 418
MAASVSTVGAV PLSLN SGAG SVPSSAFFGTSLKKV +SR+PN K+SSGSFKIVAA
Sbjct: 1 MAASVSTVGAVNGAPLSLNSSGAGASVPSSAFFGTSLKKVIASRVPNVKISSGSFKIVAA 60
Query: 419 E--IDEDKQTEKDRWKGLAYDISDDQQDITRGKGMVDSLFQAPQQAGTHYAVMSSYEYIS 592
E IDE +QT+KDRWKGLAYD+SDDQQDITRGKG+VDSLFQAPQ GTHYA+MSSYEY+S
Sbjct: 61 EKEIDEKQQTDKDRWKGLAYDVSDDQQDITRGKGLVDSLFQAPQDTGTHYAIMSSYEYLS 120
Query: 593 TGLREYNLDNTMDGLYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCE 772
TGL++YNLDN MDG YIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCE
Sbjct: 121 TGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCE 180
Query: 773 LVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 952
LVFAKMGI PIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMC LFINDLDAGAGR
Sbjct: 181 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCALFINDLDAGAGR 240
Query: 953 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR 1132
+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR
Sbjct: 241 LGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR 300
Query: 1133 DGRMEKFYWAPTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVDT 1312
DGRMEKFYWAPTR LVDT
Sbjct: 301 DGRMEKFYWAPTR--------------------DDRVGVCNGIFRTDNVPKDDIVKLVDT 340
Query: 1313 FPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFEQPKMTLDKLLEY 1492
FPGQSIDFFGALRARVYDDEVRKWIS VGVD +GKKLVNSKEGPPTF+QPKMTL KLLEY
Sbjct: 341 FPGQSIDFFGALRARVYDDEVRKWISVVGVDFIGKKLVNSKEGPPTFDQPKMTLSKLLEY 400
Query: 1493 GNMLVQEQENVKRVQLADKYLSEAALGDANEDAIKRGAF 1609
GNMLVQEQENVKRVQLADKYL EAALGDAN+D+I RG F
Sbjct: 401 GNMLVQEQENVKRVQLADKYLKEAALGDANQDSINRGTF 439
Score = 48.5 bits (114), Expect(2) = 0.0
Identities = 20/25 (80%), Positives = 21/25 (84%)
Frame = +1
Query: 1666 VPEGCIDPNASNLDPTTRSCDGTCV 1740
VPEGC DPNASN DPT RS DGTC+
Sbjct: 451 VPEGCTDPNASNFDPTARSDDGTCL 475
>ref|XP_003616450.1| Ribulose-1 5-bisphosphate carboxylase/oxygenase activase [Medicago
truncatula] gi|355517785|gb|AES99408.1| Ribulose-1
5-bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
Length = 476
Score = 724 bits (1868), Expect(2) = 0.0
Identities = 370/457 (80%), Positives = 393/457 (85%), Gaps = 1/457 (0%)
Frame = +2
Query: 242 MAASVSTVGAVK-TPLSLNGSGAGTSVPSSAFFGTSLKKVTSSRLPNAKVSSGSFKIVAA 418
M ASVS V AV TPLSLN SGA SVPSS+FFGTSLKKVTS RLPN KVSSG FKIVAA
Sbjct: 1 MVASVSAVRAVSGTPLSLNSSGAVASVPSSSFFGTSLKKVTS-RLPNTKVSSGRFKIVAA 59
Query: 419 EIDEDKQTEKDRWKGLAYDISDDQQDITRGKGMVDSLFQAPQQAGTHYAVMSSYEYISTG 598
EI+E KQT+KDRW+GLAYD SDDQQDITRGKGMVD++FQAPQ +GTHYAVMSSYEYISTG
Sbjct: 60 EINESKQTDKDRWRGLAYDTSDDQQDITRGKGMVDTVFQAPQDSGTHYAVMSSYEYISTG 119
Query: 599 LREYNLDNTMDGLYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELV 778
LR+YNLDNTMDG YIAPAFMDKLVVHI+KNF+TLPNIKVPLILGIWGGKGQGKSFQ ELV
Sbjct: 120 LRQYNLDNTMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQAELV 179
Query: 779 FAKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 958
FAKMGI PIMMSAGELESGNAGEPAKLIRQRYREA+DII+KGKMCCLFINDLDAGAGRMG
Sbjct: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDIIRKGKMCCLFINDLDAGAGRMG 239
Query: 959 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 1138
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEEN RVPIIVTGNDFSTLYAPLIRDG
Sbjct: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDG 299
Query: 1139 RMEKFYWAPTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVDTFP 1318
RMEKFYWAPTR +VDTFP
Sbjct: 300 RMEKFYWAPTR--------------------EDRIGVCKGIFRHDNVPEEDVVKIVDTFP 339
Query: 1319 GQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFEQPKMTLDKLLEYGN 1498
GQSIDFFGALRARVYDDEVRKWI+GVG++++GKKLVNSKEGPPTF+QPKM+L+KLLEYGN
Sbjct: 340 GQSIDFFGALRARVYDDEVRKWIAGVGIETIGKKLVNSKEGPPTFDQPKMSLEKLLEYGN 399
Query: 1499 MLVQEQENVKRVQLADKYLSEAALGDANEDAIKRGAF 1609
MLVQEQENVKRVQLADKYL AALGDAN+DAIK G+F
Sbjct: 400 MLVQEQENVKRVQLADKYLEGAALGDANQDAIKSGSF 436
Score = 46.6 bits (109), Expect(2) = 0.0
Identities = 18/25 (72%), Positives = 20/25 (80%)
Frame = +1
Query: 1666 VPEGCIDPNASNLDPTTRSCDGTCV 1740
+PEGC DPNA N DPT RS DGTC+
Sbjct: 448 IPEGCTDPNAKNFDPTARSDDGTCL 472
>ref|XP_002282236.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic isoform 1 [Vitis vinifera]
gi|297746032|emb|CBI16088.3| unnamed protein product
[Vitis vinifera]
Length = 472
Score = 729 bits (1881), Expect(2) = 0.0
Identities = 371/457 (81%), Positives = 395/457 (86%), Gaps = 1/457 (0%)
Frame = +2
Query: 242 MAASVSTVGAV-KTPLSLNGSGAGTSVPSSAFFGTSLKKVTSSRLPNAKVSSGSFKIVAA 418
MA +VST+GAV +TPLSLN SG G SVPSSAFFG+SLKKV SSR + K++SGSFK+VA
Sbjct: 1 MATTVSTIGAVNRTPLSLNSSGTGASVPSSAFFGSSLKKV-SSRFTHPKIASGSFKVVA- 58
Query: 419 EIDEDKQTEKDRWKGLAYDISDDQQDITRGKGMVDSLFQAPQQAGTHYAVMSSYEYISTG 598
EIDE++QTEKDRWKGLAYD+SDDQQDITRGKGMVDSLFQAP Q+GTHYAVMSSYEY+STG
Sbjct: 59 EIDENEQTEKDRWKGLAYDVSDDQQDITRGKGMVDSLFQAPMQSGTHYAVMSSYEYLSTG 118
Query: 599 LREYNLDNTMDGLYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELV 778
LR+YNLDN MDG YIAPAFMDKLVVHI+KNFMTLPNIKVPLILGIWGGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELV 178
Query: 779 FAKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 958
F+KMGI PIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGR+G
Sbjct: 179 FSKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLG 238
Query: 959 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 1138
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 298
Query: 1139 RMEKFYWAPTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVDTFP 1318
RMEKFYWAP R +VDTFP
Sbjct: 299 RMEKFYWAPNR--------------------EDRIGVCKGIFRSDNVPDDDIVKIVDTFP 338
Query: 1319 GQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFEQPKMTLDKLLEYGN 1498
GQSIDFFGALRARVYDDEVRKWISGVGVD +GKKLVNSKEGPPTFEQPKMT++KLLEYGN
Sbjct: 339 GQSIDFFGALRARVYDDEVRKWISGVGVDFIGKKLVNSKEGPPTFEQPKMTIEKLLEYGN 398
Query: 1499 MLVQEQENVKRVQLADKYLSEAALGDANEDAIKRGAF 1609
MLV EQENVKRVQLADKYLSEAALGDAN D+I+RG F
Sbjct: 399 MLVMEQENVKRVQLADKYLSEAALGDANVDSIERGTF 435
Score = 41.6 bits (96), Expect(2) = 0.0
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +1
Query: 1666 VPEGCIDPNASNLDPTTRSCDGTC 1737
VPEGC DP+A+N DPT RS +G+C
Sbjct: 447 VPEGCTDPSAANFDPTARSDNGSC 470
>emb|CAN83893.1| hypothetical protein VITISV_039112 [Vitis vinifera]
Length = 472
Score = 728 bits (1880), Expect(2) = 0.0
Identities = 371/457 (81%), Positives = 395/457 (86%), Gaps = 1/457 (0%)
Frame = +2
Query: 242 MAASVSTVGAV-KTPLSLNGSGAGTSVPSSAFFGTSLKKVTSSRLPNAKVSSGSFKIVAA 418
MA +VST+GAV +TPLSLN SG G SVPSSAFFG+SLKKV SSR + K++SGSFK+VA
Sbjct: 1 MATTVSTIGAVNRTPLSLNSSGTGXSVPSSAFFGSSLKKV-SSRFTHPKIASGSFKVVA- 58
Query: 419 EIDEDKQTEKDRWKGLAYDISDDQQDITRGKGMVDSLFQAPQQAGTHYAVMSSYEYISTG 598
EIDE++QTEKDRWKGLAYD+SDDQQDITRGKGMVDSLFQAP Q+GTHYAVMSSYEY+STG
Sbjct: 59 EIDENEQTEKDRWKGLAYDVSDDQQDITRGKGMVDSLFQAPMQSGTHYAVMSSYEYLSTG 118
Query: 599 LREYNLDNTMDGLYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELV 778
LR+YNLDN MDG YIAPAFMDKLVVHI+KNFMTLPNIKVPLILGIWGGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELV 178
Query: 779 FAKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 958
F+KMGI PIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGR+G
Sbjct: 179 FSKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLG 238
Query: 959 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 1138
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 298
Query: 1139 RMEKFYWAPTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVDTFP 1318
RMEKFYWAP R +VDTFP
Sbjct: 299 RMEKFYWAPNR--------------------EDRIGVCKGIFRSDNVPDDDIVKIVDTFP 338
Query: 1319 GQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFEQPKMTLDKLLEYGN 1498
GQSIDFFGALRARVYDDEVRKWISGVGVD +GKKLVNSKEGPPTFEQPKMT++KLLEYGN
Sbjct: 339 GQSIDFFGALRARVYDDEVRKWISGVGVDFIGKKLVNSKEGPPTFEQPKMTIEKLLEYGN 398
Query: 1499 MLVQEQENVKRVQLADKYLSEAALGDANEDAIKRGAF 1609
MLV EQENVKRVQLADKYLSEAALGDAN D+I+RG F
Sbjct: 399 MLVMEQENVKRVQLADKYLSEAALGDANVDSIERGTF 435
Score = 41.6 bits (96), Expect(2) = 0.0
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +1
Query: 1666 VPEGCIDPNASNLDPTTRSCDGTC 1737
VPEGC DP+A+N DPT RS +G+C
Sbjct: 447 VPEGCTDPSAANFDPTARSDNGSC 470