BLASTX nr result
ID: Glycyrrhiza23_contig00034787
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza23_contig00034787
(429 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003609573.1| Pentatricopeptide repeat-containing protein ... 260 7e-68
ref|XP_003528655.1| PREDICTED: pentatricopeptide repeat-containi... 255 2e-66
ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containi... 198 4e-49
ref|XP_002314475.1| predicted protein [Populus trichocarpa] gi|2... 189 2e-46
emb|CBI26127.3| unnamed protein product [Vitis vinifera] 185 3e-45
>ref|XP_003609573.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510628|gb|AES91770.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 665
Score = 260 bits (665), Expect = 7e-68
Identities = 129/142 (90%), Positives = 131/142 (92%)
Frame = -3
Query: 427 SFYAKLECHNDAMKVFTSFGAFNQVSWNAIIDAHMKVGDTQKALLAFQQAPEKNIVSWTS 248
SFYAKLECH DA+KVF S GAFNQVSWNAIIDAHMKVGDTQKALLAFQQAPEKNIVSWTS
Sbjct: 247 SFYAKLECHGDAVKVFNSGGAFNQVSWNAIIDAHMKVGDTQKALLAFQQAPEKNIVSWTS 306
Query: 247 MIAGYTRNGCGELALSKFLDMTRNSVQLDDLVAGAVLHACASLATLAHGKMVHSCIIRLG 68
MI GYTRNG G+LALS FLDM RNS QLDDLVAGAVLHACASLA L HGKMVHSCII LG
Sbjct: 307 MIVGYTRNGNGDLALSLFLDMKRNSFQLDDLVAGAVLHACASLAILVHGKMVHSCIIHLG 366
Query: 67 LDKYLFVGNSLINMYAKCGDIE 2
LDKYLFVGNSLINMYAKCGDIE
Sbjct: 367 LDKYLFVGNSLINMYAKCGDIE 388
Score = 77.4 bits (189), Expect = 1e-12
Identities = 44/135 (32%), Positives = 65/135 (48%)
Frame = -3
Query: 421 YAKLECHNDAMKVFTSFGAFNQVSWNAIIDAHMKVGDTQKALLAFQQAPEKNIVSWTSMI 242
Y K NDA KVF N+V+W +++ A+ A F+ PEK ++W +I
Sbjct: 117 YGKCFNPNDARKVFDEMNYSNEVTWCSLLFAYANTCRFDMAFEIFRSMPEKVEIAWNIII 176
Query: 241 AGYTRNGCGELALSKFLDMTRNSVQLDDLVAGAVLHACASLATLAHGKMVHSCIIRLGLD 62
A + R G E L F +M N Q D A++ AC HG M+H +I+ G
Sbjct: 177 AAHARCGEVEACLHLFKEMCENLYQPDQWTFSALMSACTESMESLHGCMMHCFVIKSGWS 236
Query: 61 KYLFVGNSLINMYAK 17
+ V NS+++ YAK
Sbjct: 237 TAMEVNNSIVSFYAK 251
Score = 58.5 bits (140), Expect = 5e-07
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Frame = -3
Query: 289 FQQAPEKNIVSWTSMIAGYTRNGCGELALSKFLDMTRNS-VQLDDLVAGAVLHACASLAT 113
F + PE++ V+W +M+ Y+R G + F M R S + D+ A +++CA +
Sbjct: 28 FDEMPERDTVAWNAMLTAYSRLGLYQQTFDLFDSMRRISDSKPDNFSYSAAINSCAGASD 87
Query: 112 LAHGKMVHSCIIRLGLDKYLFVGNSLINMYAKC 14
+ G +HS ++ G L V N+LI+MY KC
Sbjct: 88 IRFGTKLHSLVVVSGYQSSLPVANALIDMYGKC 120
>ref|XP_003528655.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
mitochondrial-like [Glycine max]
Length = 629
Score = 255 bits (652), Expect = 2e-66
Identities = 123/142 (86%), Positives = 132/142 (92%)
Frame = -3
Query: 427 SFYAKLECHNDAMKVFTSFGAFNQVSWNAIIDAHMKVGDTQKALLAFQQAPEKNIVSWTS 248
SFYAKLEC +DAMKVF SFG FNQVSWNAIIDAHMK+GDTQKA LAFQ+APE+NIVSWTS
Sbjct: 248 SFYAKLECQDDAMKVFNSFGCFNQVSWNAIIDAHMKLGDTQKAFLAFQKAPERNIVSWTS 307
Query: 247 MIAGYTRNGCGELALSKFLDMTRNSVQLDDLVAGAVLHACASLATLAHGKMVHSCIIRLG 68
MIAGYTRNG GELALS FLD+TRNSVQLDDLVAGAVLHACASLA L HG+MVH CIIR G
Sbjct: 308 MIAGYTRNGNGELALSMFLDLTRNSVQLDDLVAGAVLHACASLAILVHGRMVHGCIIRHG 367
Query: 67 LDKYLFVGNSLINMYAKCGDIE 2
LDKYL+VGNSL+NMYAKCGDI+
Sbjct: 368 LDKYLYVGNSLVNMYAKCGDIK 389
Score = 78.6 bits (192), Expect = 5e-13
Identities = 44/135 (32%), Positives = 70/135 (51%)
Frame = -3
Query: 421 YAKLECHNDAMKVFTSFGAFNQVSWNAIIDAHMKVGDTQKALLAFQQAPEKNIVSWTSMI 242
Y K +DA KVF N+V+W +++ A+ AL F+ PE+ +++W MI
Sbjct: 118 YGKCLLPDDARKVFDETSDSNEVTWCSLMFAYANSCRLGVALELFRSMPERVVIAWNIMI 177
Query: 241 AGYTRNGCGELALSKFLDMTRNSVQLDDLVAGAVLHACASLATLAHGKMVHSCIIRLGLD 62
G+ R G E L F +M + Q D A+++ACA + +G MVH +I+ G
Sbjct: 178 VGHARRGEVEACLHLFKEMCGSLCQPDQWTFSALINACAVSMEMLYGCMVHGFVIKSGWS 237
Query: 61 KYLFVGNSLINMYAK 17
+ V NS+++ YAK
Sbjct: 238 SAMEVKNSMLSFYAK 252
Score = 56.6 bits (135), Expect = 2e-06
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
Frame = -3
Query: 337 IDAHMKVGDTQKALLAFQQAPEKNIVSWTSMIAGYTRNGCGELALSKFLDMTRNSVQLDD 158
I A + G A F + P K+ V+W +M+ Y+ G + +LS F M + + D+
Sbjct: 12 IVALARSGQISDARKLFDEIPHKDSVAWNAMLTAYSHVGLYQQSLSLFGCMRISHSKPDN 71
Query: 157 LVAGAVLH--ACASLATLAHGKMVHSCIIRLGLDKYLFVGNSLINMYAKC 14
AVL+ ACA + + G +H+ ++ G L V NSLI+MY KC
Sbjct: 72 FSFSAVLNACACAGASYVRFGATLHALVVVSGYLSSLPVANSLIDMYGKC 121
>ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
mitochondrial-like [Vitis vinifera]
Length = 623
Score = 198 bits (503), Expect = 4e-49
Identities = 94/142 (66%), Positives = 107/142 (75%)
Frame = -3
Query: 427 SFYAKLECHNDAMKVFTSFGAFNQVSWNAIIDAHMKVGDTQKALLAFQQAPEKNIVSWTS 248
SFY+KL C +D MKVF S G QVSWNA+IDAHMK+GDT +A L FQ APEKN+VSWTS
Sbjct: 246 SFYSKLGCKDDVMKVFESIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTS 305
Query: 247 MIAGYTRNGCGELALSKFLDMTRNSVQLDDLVAGAVLHACASLATLAHGKMVHSCIIRLG 68
MI GY RNG GE ALS F+ M N +Q DD GAVLHAC+SLATL HGKM+H II G
Sbjct: 306 MITGYARNGHGEQALSFFVKMMENHIQPDDFTFGAVLHACSSLATLGHGKMIHGSIIHYG 365
Query: 67 LDKYLFVGNSLINMYAKCGDIE 2
Y+ VGN L+NMYAKCGDI+
Sbjct: 366 FHAYVDVGNGLVNMYAKCGDIQ 387
Score = 79.0 bits (193), Expect = 4e-13
Identities = 45/137 (32%), Positives = 71/137 (51%)
Frame = -3
Query: 421 YAKLECHNDAMKVFTSFGAFNQVSWNAIIDAHMKVGDTQKALLAFQQAPEKNIVSWTSMI 242
Y K A +VF N+VSW +++ A+ G A + F P+K ++W MI
Sbjct: 116 YGKCLSATSARRVFEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMI 175
Query: 241 AGYTRNGCGELALSKFLDMTRNSVQLDDLVAGAVLHACASLATLAHGKMVHSCIIRLGLD 62
+GY + G EL L F M +S+Q D A+++A L ++G M+H II+ G
Sbjct: 176 SGYGQCGDVELCLGLFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWV 235
Query: 61 KYLFVGNSLINMYAKCG 11
K + V NS+++ Y+K G
Sbjct: 236 KAVEVSNSILSFYSKLG 252
Score = 69.7 bits (169), Expect = 2e-10
Identities = 40/108 (37%), Positives = 56/108 (51%)
Frame = -3
Query: 337 IDAHMKVGDTQKALLAFQQAPEKNIVSWTSMIAGYTRNGCGELALSKFLDMTRNSVQLDD 158
I A K+G A F + P K+ V+W +M+A Y++ G + AL F M + + D
Sbjct: 12 IVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIANSRPDR 71
Query: 157 LVAGAVLHACASLATLAHGKMVHSCIIRLGLDKYLFVGNSLINMYAKC 14
A L ACA L L G +H+ ++ G L VGNSLI+MY KC
Sbjct: 72 FTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKC 119
>ref|XP_002314475.1| predicted protein [Populus trichocarpa] gi|222863515|gb|EEF00646.1|
predicted protein [Populus trichocarpa]
Length = 492
Score = 189 bits (480), Expect = 2e-46
Identities = 89/142 (62%), Positives = 106/142 (74%)
Frame = -3
Query: 427 SFYAKLECHNDAMKVFTSFGAFNQVSWNAIIDAHMKVGDTQKALLAFQQAPEKNIVSWTS 248
SFYAKL NDA+KVF S G QVSWNAIID MK GDT +A L+FQ+ P+KN+VSWTS
Sbjct: 115 SFYAKLGSLNDAVKVFESMGTLTQVSWNAIIDVFMKAGDTSEAFLSFQRMPDKNVVSWTS 174
Query: 247 MIAGYTRNGCGELALSKFLDMTRNSVQLDDLVAGAVLHACASLATLAHGKMVHSCIIRLG 68
MI GY RNG GE AL F+ M RN + DD GAVLHAC+SLA L HG+MVH C+IR G
Sbjct: 175 MITGYARNGYGEEALDFFVGMIRNCLLPDDFTFGAVLHACSSLAILGHGRMVHGCVIRHG 234
Query: 67 LDKYLFVGNSLINMYAKCGDIE 2
++++GN L+NMYAKCGD+E
Sbjct: 235 FHAHVYIGNGLVNMYAKCGDLE 256
Score = 69.3 bits (168), Expect = 3e-10
Identities = 36/119 (30%), Positives = 61/119 (51%)
Frame = -3
Query: 361 NQVSWNAIIDAHMKVGDTQKALLAFQQAPEKNIVSWTSMIAGYTRNGCGELALSKFLDMT 182
N+VSW +++ A+ G A F+ P+K V+W MI+G + G EL L F +M
Sbjct: 5 NEVSWGSLLFAYTNSGQFDAAASVFKSMPKKVDVAWNIMISGLGQYGEIELCLEMFKEMR 64
Query: 181 RNSVQLDDLVAGAVLHACASLATLAHGKMVHSCIIRLGLDKYLFVGNSLINMYAKCGDI 5
+ + D A++ A L +G M+H+ +I+ G + NS+++ YAK G +
Sbjct: 65 ESLCEPDQWTYSALISAFTESLELVYGCMMHAVVIKTGWSSAMEANNSILSFYAKLGSL 123
>emb|CBI26127.3| unnamed protein product [Vitis vinifera]
Length = 603
Score = 185 bits (470), Expect = 3e-45
Identities = 88/133 (66%), Positives = 100/133 (75%)
Frame = -3
Query: 400 NDAMKVFTSFGAFNQVSWNAIIDAHMKVGDTQKALLAFQQAPEKNIVSWTSMIAGYTRNG 221
+D MKVF S G QVSWNA+IDAHMK+GDT +A L FQ APEKN+VSWTSMI GY RNG
Sbjct: 235 DDVMKVFESIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNG 294
Query: 220 CGELALSKFLDMTRNSVQLDDLVAGAVLHACASLATLAHGKMVHSCIIRLGLDKYLFVGN 41
GE ALS F+ M N +Q DD GAVLHAC+SLATL HGKM+H II G Y+ VGN
Sbjct: 295 HGEQALSFFVKMMENHIQPDDFTFGAVLHACSSLATLGHGKMIHGSIIHYGFHAYVDVGN 354
Query: 40 SLINMYAKCGDIE 2
L+NMYAKCGDI+
Sbjct: 355 GLVNMYAKCGDIQ 367
Score = 70.5 bits (171), Expect = 1e-10
Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 11/149 (7%)
Frame = -3
Query: 421 YAKLECHNDAMKVFTSFGAFNQVSWNAIIDAHMKVGDTQKALLAFQQAPEKNIVSWTSMI 242
Y K A +VF N+VSW +++ A+ G A + F P+K ++W MI
Sbjct: 116 YGKCLSATSARRVFEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMI 175
Query: 241 AGYTRNGCGELALSKFLDMTRNSVQLDDLVAGAVLHACASLATLAHGKMVHSCIIRLGLD 62
+GY + G EL L F M +S+Q D A+++A L ++G M+H II+ G D
Sbjct: 176 SGYGQCGDVELCLGLFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWD 235
Query: 61 KYLFV-----------GNSLINMYAKCGD 8
+ V N++I+ + K GD
Sbjct: 236 DVMKVFESIGILTQVSWNAMIDAHMKIGD 264
Score = 69.7 bits (169), Expect = 2e-10
Identities = 40/108 (37%), Positives = 56/108 (51%)
Frame = -3
Query: 337 IDAHMKVGDTQKALLAFQQAPEKNIVSWTSMIAGYTRNGCGELALSKFLDMTRNSVQLDD 158
I A K+G A F + P K+ V+W +M+A Y++ G + AL F M + + D
Sbjct: 12 IVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIANSRPDR 71
Query: 157 LVAGAVLHACASLATLAHGKMVHSCIIRLGLDKYLFVGNSLINMYAKC 14
A L ACA L L G +H+ ++ G L VGNSLI+MY KC
Sbjct: 72 FTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKC 119