BLASTX nr result

ID: Glycyrrhiza23_contig00034701 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00034701
         (317 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002300091.1| predicted protein [Populus trichocarpa] gi|2...    85   2e-20
ref|XP_002509556.1| 26S proteasome regulatory subunit S3, putati...    86   2e-20
ref|XP_002323991.1| predicted protein [Populus trichocarpa] gi|2...    84   9e-20
ref|XP_002263731.1| PREDICTED: COP9 signalosome complex subunit ...    82   1e-19
ref|XP_004159785.1| PREDICTED: LOW QUALITY PROTEIN: COP9 signalo...    75   8e-17

>ref|XP_002300091.1| predicted protein [Populus trichocarpa] gi|222847349|gb|EEE84896.1|
           predicted protein [Populus trichocarpa]
          Length = 423

 Score = 84.7 bits (208), Expect(2) = 2e-20
 Identities = 38/42 (90%), Positives = 41/42 (97%)
 Frame = -3

Query: 315 MIQDGDIYAAINQKDGMVRFLEDPEQYKTCEMIEHVDSSIQR 190
           MIQDG+IYA INQ+DGMVRFLEDPEQYKTCEMIEH+DSSIQR
Sbjct: 336 MIQDGEIYATINQRDGMVRFLEDPEQYKTCEMIEHIDSSIQR 377



 Score = 39.3 bits (90), Expect(2) = 2e-20
 Identities = 18/23 (78%), Positives = 21/23 (91%), Gaps = 1/23 (4%)
 Frame = -2

Query: 193 EVGRERQRYDFDDYG-VPQKFNI 128
           +VGRERQR+DFDD+  VPQKFNI
Sbjct: 401 KVGRERQRFDFDDFDPVPQKFNI 423


>ref|XP_002509556.1| 26S proteasome regulatory subunit S3, putative [Ricinus communis]
           gi|223549455|gb|EEF50943.1| 26S proteasome regulatory
           subunit S3, putative [Ricinus communis]
          Length = 427

 Score = 85.9 bits (211), Expect(2) = 2e-20
 Identities = 39/42 (92%), Positives = 41/42 (97%)
 Frame = -3

Query: 315 MIQDGDIYAAINQKDGMVRFLEDPEQYKTCEMIEHVDSSIQR 190
           MIQDG+IYA INQKDGMVRFLEDPEQYKTCEMIEH+DSSIQR
Sbjct: 340 MIQDGEIYATINQKDGMVRFLEDPEQYKTCEMIEHIDSSIQR 381



 Score = 37.7 bits (86), Expect(2) = 2e-20
 Identities = 17/23 (73%), Positives = 20/23 (86%), Gaps = 1/23 (4%)
 Frame = -2

Query: 193 EVGRERQRYDFDDYG-VPQKFNI 128
           + GRERQR+DFDD+  VPQKFNI
Sbjct: 405 KAGRERQRFDFDDFDTVPQKFNI 427


>ref|XP_002323991.1| predicted protein [Populus trichocarpa] gi|222866993|gb|EEF04124.1|
           predicted protein [Populus trichocarpa]
          Length = 424

 Score = 84.0 bits (206), Expect(2) = 9e-20
 Identities = 38/42 (90%), Positives = 40/42 (95%)
 Frame = -3

Query: 315 MIQDGDIYAAINQKDGMVRFLEDPEQYKTCEMIEHVDSSIQR 190
           MIQDG+IYA INQKDGMVRFLEDPEQYK CEMIEH+DSSIQR
Sbjct: 337 MIQDGEIYATINQKDGMVRFLEDPEQYKNCEMIEHIDSSIQR 378



 Score = 37.7 bits (86), Expect(2) = 9e-20
 Identities = 17/23 (73%), Positives = 20/23 (86%), Gaps = 1/23 (4%)
 Frame = -2

Query: 193 EVGRERQRYDFDDYG-VPQKFNI 128
           + GRERQR+DFDD+  VPQKFNI
Sbjct: 402 KAGRERQRFDFDDFDPVPQKFNI 424


>ref|XP_002263731.1| PREDICTED: COP9 signalosome complex subunit 3 [Vitis vinifera]
           gi|296090247|emb|CBI40066.3| unnamed protein product
           [Vitis vinifera]
          Length = 424

 Score = 82.0 bits (201), Expect(2) = 1e-19
 Identities = 37/42 (88%), Positives = 40/42 (95%)
 Frame = -3

Query: 315 MIQDGDIYAAINQKDGMVRFLEDPEQYKTCEMIEHVDSSIQR 190
           MIQDG+I+A INQKDGMVRF EDPEQYKTCEMIEH+DSSIQR
Sbjct: 337 MIQDGEIFATINQKDGMVRFQEDPEQYKTCEMIEHIDSSIQR 378



 Score = 39.3 bits (90), Expect(2) = 1e-19
 Identities = 18/23 (78%), Positives = 20/23 (86%), Gaps = 1/23 (4%)
 Frame = -2

Query: 193 EVGRERQRYDFDDYG-VPQKFNI 128
           + GRERQR+DFDDY  VPQKFNI
Sbjct: 402 KAGRERQRFDFDDYDTVPQKFNI 424


>ref|XP_004159785.1| PREDICTED: LOW QUALITY PROTEIN: COP9 signalosome complex subunit
           3-like [Cucumis sativus]
          Length = 423

 Score = 74.7 bits (182), Expect(2) = 8e-17
 Identities = 34/42 (80%), Positives = 38/42 (90%)
 Frame = -3

Query: 315 MIQDGDIYAAINQKDGMVRFLEDPEQYKTCEMIEHVDSSIQR 190
           MIQDG+I+A INQKDGMVRFLED EQYK+C MIE +DSSIQR
Sbjct: 336 MIQDGEIFATINQKDGMVRFLEDSEQYKSCRMIERIDSSIQR 377



 Score = 37.0 bits (84), Expect(2) = 8e-17
 Identities = 16/23 (69%), Positives = 20/23 (86%), Gaps = 1/23 (4%)
 Frame = -2

Query: 193 EVGRERQRYDFDDY-GVPQKFNI 128
           + GRERQR+D+DD+  VPQKFNI
Sbjct: 401 KAGRERQRFDYDDFDSVPQKFNI 423


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