BLASTX nr result
ID: Glycyrrhiza23_contig00034686
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza23_contig00034686
(269 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002888986.1| hypothetical protein ARALYDRAFT_476599 [Arab... 114 8e-24
ref|NP_177599.1| pentatricopeptide repeat-containing protein [Ar... 114 1e-23
ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containi... 112 3e-23
ref|XP_002511573.1| pentatricopeptide repeat-containing protein,... 111 7e-23
ref|XP_003537198.1| PREDICTED: pentatricopeptide repeat-containi... 78 9e-13
>ref|XP_002888986.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
lyrata] gi|297334827|gb|EFH65245.1| hypothetical protein
ARALYDRAFT_476599 [Arabidopsis lyrata subsp. lyrata]
Length = 717
Score = 114 bits (285), Expect = 8e-24
Identities = 51/78 (65%), Positives = 62/78 (79%)
Frame = +1
Query: 1 EGVKPDEYCISSVLSIMSCLNLGSQVHGYILKSGLVTDASVGCSLFTMYSKCGCLEESYK 180
EG+ PDE+ + S+LS++ CLNLG QVH Y LKSGL+ D +VG SLFTMYSKCG LEESY
Sbjct: 269 EGLNPDEFSVCSLLSVLDCLNLGKQVHSYTLKSGLILDLTVGSSLFTMYSKCGSLEESYS 328
Query: 181 VFQQVVVKDNVSWASMIS 234
+FQ++ KDN WASMIS
Sbjct: 329 LFQEIPFKDNACWASMIS 346
Score = 68.6 bits (166), Expect = 5e-10
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Frame = +1
Query: 4 GVKPDEYCISSVLS---IMSCLNLGSQVHGYILKSGLVTDASVGCSLFTMYSKCGCLEES 174
G D Y ISS+L + LG+QVH YI K GL T+ SVG SL TMYSK G +E+
Sbjct: 469 GFSMDSYAISSILKAAVLSEESELGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIEDC 528
Query: 175 YKVFQQVVVKDNVSWASMIS 234
K F Q+ D ++W ++I+
Sbjct: 529 CKAFSQINGPDLIAWTALIA 548
Score = 57.4 bits (137), Expect = 1e-06
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Frame = +1
Query: 1 EGVKPDEYCISSVLSIMSCLNL---GSQVHGYILKSGLVTDASVGCSLFTMYSKCGCLEE 171
EG PDE +++VL++ S L ++HGY L++G+ +G +L YSKCG L+
Sbjct: 367 EGTSPDESTLAAVLTVCSSLPSLPRSKEIHGYTLRAGIDRGMPLGSALVNTYSKCGSLKL 426
Query: 172 SYKVFQQVVVKDNVSWASMIS 234
+ KV+ ++ D VS +S+IS
Sbjct: 427 ARKVYDRLPEMDPVSCSSLIS 447
>ref|NP_177599.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169837|sp|Q9CA56.1|PP121_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At1g74600, chloroplastic; Flags: Precursor
gi|12324789|gb|AAG52351.1|AC011765_3 hypothetical
protein; 84160-81473 [Arabidopsis thaliana]
gi|332197493|gb|AEE35614.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 895
Score = 114 bits (284), Expect = 1e-23
Identities = 52/78 (66%), Positives = 63/78 (80%)
Frame = +1
Query: 1 EGVKPDEYCISSVLSIMSCLNLGSQVHGYILKSGLVTDASVGCSLFTMYSKCGCLEESYK 180
EG++ DE+ + S+LS++ CLNLG QVHGY LKSGLV D +VG SLFT+YSKCG LEESYK
Sbjct: 447 EGLRTDEFSVCSLLSVLDCLNLGKQVHGYTLKSGLVLDLTVGSSLFTLYSKCGSLEESYK 506
Query: 181 VFQQVVVKDNVSWASMIS 234
+FQ + KDN WASMIS
Sbjct: 507 LFQGIPFKDNACWASMIS 524
Score = 66.2 bits (160), Expect = 3e-09
Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Frame = +1
Query: 4 GVKPDEYCISSVLSIMSCLN---LGSQVHGYILKSGLVTDASVGCSLFTMYSKCGCLEES 174
G D + ISS+L + + LG+QVH YI K GL T+ SVG SL TMYSK G +++
Sbjct: 647 GFTMDSFAISSILKAAALSDESSLGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIDDC 706
Query: 175 YKVFQQVVVKDNVSWASMIS 234
K F Q+ D ++W ++I+
Sbjct: 707 CKAFSQINGPDLIAWTALIA 726
Score = 59.3 bits (142), Expect = 3e-07
Identities = 30/81 (37%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Frame = +1
Query: 1 EGVKPDEYCISSVLSIMSC---LNLGSQVHGYILKSGLVTDASVGCSLFTMYSKCGCLEE 171
+G PDE +++VL++ S L G ++HGY L++G+ +G +L MYSKCG L+
Sbjct: 545 DGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNMYSKCGSLKL 604
Query: 172 SYKVFQQVVVKDNVSWASMIS 234
+ +V+ ++ D VS +S+IS
Sbjct: 605 ARQVYDRLPELDPVSCSSLIS 625
>ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
chloroplastic [Vitis vinifera]
gi|297733984|emb|CBI15231.3| unnamed protein product
[Vitis vinifera]
Length = 893
Score = 112 bits (280), Expect = 3e-23
Identities = 58/89 (65%), Positives = 68/89 (76%)
Frame = +1
Query: 1 EGVKPDEYCISSVLSIMSCLNLGSQVHGYILKSGLVTDASVGCSLFTMYSKCGCLEESYK 180
EG++PD++C SSVLSI+ L+LG +H YILK GL TD SVG SLFTMYSKCG LEESY
Sbjct: 445 EGLRPDKFCSSSVLSIIDSLSLGRLIHCYILKIGLFTDISVGSSLFTMYSKCGSLEESYT 504
Query: 181 VFQQVVVKDNVSWASMISVLQSMDIHALQ 267
VF+Q+ KDNVSWASMI+ D HA Q
Sbjct: 505 VFEQMPDKDNVSWASMITGFSEHD-HAEQ 532
Score = 73.9 bits (180), Expect = 1e-11
Identities = 34/75 (45%), Positives = 53/75 (70%), Gaps = 3/75 (4%)
Frame = +1
Query: 16 DEYCISSVL---SIMSCLNLGSQVHGYILKSGLVTDASVGCSLFTMYSKCGCLEESYKVF 186
D + +SSV+ +I++ L++G+Q+H + K GL + SVG SL TMYSKCG ++E +KVF
Sbjct: 649 DSFTVSSVIGAVAILNSLDIGTQLHACVTKMGLNAEVSVGSSLVTMYSKCGSIDECHKVF 708
Query: 187 QQVVVKDNVSWASMI 231
+Q+ D +SW +MI
Sbjct: 709 EQIEKPDLISWTAMI 723
Score = 55.8 bits (133), Expect = 3e-06
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Frame = +1
Query: 1 EGVKPDEYCISSVLSIMSCLNL---GSQVHGYILKSGLVTDASVGCSLFTMYSKCGCLEE 171
E ++PD+ +++ L+ S L+ G +VHGY L++ + + VG +L MYSKCG +
Sbjct: 543 EEIRPDQMTLTAALTACSALHSLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAIVL 602
Query: 172 SYKVFQQVVVKDNVSWASMIS 234
+ +VF + KD S +S++S
Sbjct: 603 ARRVFDMLPQKDQFSCSSLVS 623
>ref|XP_002511573.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223550688|gb|EEF52175.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 954
Score = 111 bits (277), Expect = 7e-23
Identities = 49/78 (62%), Positives = 65/78 (83%)
Frame = +1
Query: 1 EGVKPDEYCISSVLSIMSCLNLGSQVHGYILKSGLVTDASVGCSLFTMYSKCGCLEESYK 180
+G++PD++C+SSVLS++ L LG ++H YILK+G V D SVG SLFTMYSKCG + +SYK
Sbjct: 448 QGLRPDKFCLSSVLSVIDSLYLGREIHCYILKTGFVLDLSVGSSLFTMYSKCGSIGDSYK 507
Query: 181 VFQQVVVKDNVSWASMIS 234
VF+Q+ VKDN+SW SMIS
Sbjct: 508 VFEQIPVKDNISWTSMIS 525
Score = 72.0 bits (175), Expect = 5e-11
Identities = 34/76 (44%), Positives = 52/76 (68%), Gaps = 3/76 (3%)
Frame = +1
Query: 16 DEYCISSVLSIMSCLN---LGSQVHGYILKSGLVTDASVGCSLFTMYSKCGCLEESYKVF 186
D + +SSVL ++ LN G+Q+H +++K GL +D SVG SL T+YSKCG +E+ +K F
Sbjct: 652 DSFAVSSVLGAIAGLNRLDFGTQLHAHLVKLGLDSDVSVGSSLVTVYSKCGSIEDCWKAF 711
Query: 187 QQVVVKDNVSWASMIS 234
Q+ D +SW +MI+
Sbjct: 712 NQIDDADLISWTTMIA 727
Score = 65.9 bits (159), Expect = 3e-09
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Frame = +1
Query: 1 EGVKPDEYCISSVLSIMSC---LNLGSQVHGYILKSGLVTDASVGCSLFTMYSKCGCLEE 171
E KPD+ S++LS S L G ++HGY ++ L +A VG +L MYSKCG LE
Sbjct: 546 ERSKPDQTTFSAILSAASSIHSLQKGKEIHGYAYRARLGDEALVGGALVNMYSKCGALES 605
Query: 172 SYKVFQQVVVKDNVSWASMIS 234
+ K+F + VKD VS +S++S
Sbjct: 606 ARKMFDLLAVKDQVSCSSLVS 626
>ref|XP_003537198.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49740-like [Glycine max]
Length = 722
Score = 77.8 bits (190), Expect = 9e-13
Identities = 37/79 (46%), Positives = 57/79 (72%), Gaps = 3/79 (3%)
Frame = +1
Query: 7 VKPDEYCISSVLSI---MSCLNLGSQVHGYILKSGLVTDASVGCSLFTMYSKCGCLEESY 177
VKP+ Y +S VLSI MS ++ G QVHGYIL+ G ++ S+G +L TMY+KCG L+++
Sbjct: 472 VKPNAYSLSLVLSICSSMSAMSHGKQVHGYILRHGFSSEVSLGNALVTMYAKCGSLDKAL 531
Query: 178 KVFQQVVVKDNVSWASMIS 234
+VF +V +D ++W ++IS
Sbjct: 532 RVFDAMVERDTITWNAIIS 550
Score = 57.8 bits (138), Expect = 9e-07
Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 5/88 (5%)
Frame = +1
Query: 4 GVKPDEYCISSVLSIMSC--LNLGSQVHGYILKSGLVTDASVGCSLFTMYSKCGCLEESY 177
GVK D+Y +++LS+ S + G VH ++KSG + SV SL TMY KCGC+ ++
Sbjct: 173 GVKADKYTFATMLSLCSLELFDYGRHVHSVVIKSGFLGWTSVVNSLITMYFKCGCVVDAC 232
Query: 178 KVFQQVV---VKDNVSWASMISVLQSMD 252
+VF++ +D VS+ +MI S++
Sbjct: 233 EVFEEAEEGGSRDYVSYNAMIDGFASVE 260