BLASTX nr result

ID: Glycyrrhiza23_contig00034614 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00034614
         (312 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003541832.1| PREDICTED: small RNA degrading nuclease 5-li...   144   1e-32
ref|XP_003544731.1| PREDICTED: small RNA degrading nuclease 5-li...   130   8e-29
ref|XP_002520248.1| rnase h, putative [Ricinus communis] gi|2235...   122   3e-26
ref|XP_002307475.1| predicted protein [Populus trichocarpa] gi|2...   117   7e-25
ref|XP_002278571.1| PREDICTED: small RNA degrading nuclease 5-li...   113   1e-23

>ref|XP_003541832.1| PREDICTED: small RNA degrading nuclease 5-like [Glycine max]
          Length = 576

 Score =  144 bits (362), Expect = 1e-32
 Identities = 73/101 (72%), Positives = 83/101 (82%), Gaps = 2/101 (1%)
 Frame = -1

Query: 297 QVAAAARMDSSSERKSEALCSVEEED-STDNNKCSNFYDVYGPQGKADVVFKL-DDNSTL 124
           QV AA RM  SSE ++EAL   EEE+ ST N KC  FYDVYGP+GKAD+VF   +DNSTL
Sbjct: 3   QVVAAERM-GSSEAENEALRGAEEEEGSTSNKKCGKFYDVYGPEGKADIVFNSPEDNSTL 61

Query: 123 NLTDIQGLVTWVLGEGLMPSWVFIKNKPLIPKVVILYIPGL 1
           NL+D+QGLVTWVL EG MPSWVFIKNKPLIPKVV+LY+PGL
Sbjct: 62  NLSDVQGLVTWVLSEGFMPSWVFIKNKPLIPKVVMLYVPGL 102


>ref|XP_003544731.1| PREDICTED: small RNA degrading nuclease 5-like [Glycine max]
          Length = 567

 Score =  130 bits (328), Expect = 8e-29
 Identities = 61/78 (78%), Positives = 68/78 (87%), Gaps = 1/78 (1%)
 Frame = -1

Query: 231 EEEDSTDNNKCSNFYDVYGPQGKADVVFKL-DDNSTLNLTDIQGLVTWVLGEGLMPSWVF 55
           EEEDST   K   FYD+YGP+GKADVVF   +DNSTLNL+D+QGLVTWVLGEG MPSWVF
Sbjct: 16  EEEDSTSTKKRGKFYDIYGPEGKADVVFNSPEDNSTLNLSDVQGLVTWVLGEGFMPSWVF 75

Query: 54  IKNKPLIPKVVILYIPGL 1
           IKNKPLIPKVV+LY+PGL
Sbjct: 76  IKNKPLIPKVVMLYVPGL 93


>ref|XP_002520248.1| rnase h, putative [Ricinus communis] gi|223540467|gb|EEF42034.1|
           rnase h, putative [Ricinus communis]
          Length = 572

 Score =  122 bits (306), Expect = 3e-26
 Identities = 58/92 (63%), Positives = 75/92 (81%), Gaps = 3/92 (3%)
 Frame = -1

Query: 267 SSERKSEALCSVEEEDSTDN--NKCSNFYDVYGPQGKADVVFKLDD-NSTLNLTDIQGLV 97
           S + + +A+ S +E+DSTDN  N  +N++D+YGPQ KA++VFK+ + N TLNL D+QGLV
Sbjct: 7   SPKHEIQAVSSSKEDDSTDNCNNITNNYFDIYGPQAKAEIVFKMPEANQTLNLEDVQGLV 66

Query: 96  TWVLGEGLMPSWVFIKNKPLIPKVVILYIPGL 1
           TWVL EG MPSWVFIKNKPLIPKV +L+IPGL
Sbjct: 67  TWVLAEGFMPSWVFIKNKPLIPKVAMLFIPGL 98


>ref|XP_002307475.1| predicted protein [Populus trichocarpa] gi|222856924|gb|EEE94471.1|
           predicted protein [Populus trichocarpa]
          Length = 545

 Score =  117 bits (294), Expect = 7e-25
 Identities = 60/97 (61%), Positives = 76/97 (78%), Gaps = 5/97 (5%)
 Frame = -1

Query: 276 MDSSSERKSEALCSVEEEDSTD---NNKCSNFYDVYGPQGKADVVFKL--DDNSTLNLTD 112
           M  S+ERKSE    V+EE ++D   ++K + FYD+YGP  +A+VV+K   + +STLNL D
Sbjct: 1   MGDSAERKSE----VKEEKTSDCSSSSKGNKFYDIYGPDARAEVVYKTPPETSSTLNLQD 56

Query: 111 IQGLVTWVLGEGLMPSWVFIKNKPLIPKVVILYIPGL 1
           +QGLVTWVL EG MPSWVFIKNKPLIPKVV+LY+PGL
Sbjct: 57  VQGLVTWVLSEGFMPSWVFIKNKPLIPKVVMLYVPGL 93


>ref|XP_002278571.1| PREDICTED: small RNA degrading nuclease 5-like [Vitis vinifera]
          Length = 572

 Score =  113 bits (283), Expect = 1e-23
 Identities = 52/76 (68%), Positives = 63/76 (82%), Gaps = 1/76 (1%)
 Frame = -1

Query: 225 EDSTDNNKCSNFYDVYGPQGKADVVFKLDD-NSTLNLTDIQGLVTWVLGEGLMPSWVFIK 49
           E +T+    S F+D+YGP+ KA+VVFK  D +STLNL D+QGLVTWVL EG MPSW+FIK
Sbjct: 16  ESATNATASSTFFDIYGPEAKAEVVFKTPDADSTLNLQDVQGLVTWVLAEGFMPSWIFIK 75

Query: 48  NKPLIPKVVILYIPGL 1
           NKPLIPKVV+LY+PGL
Sbjct: 76  NKPLIPKVVMLYVPGL 91


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