BLASTX nr result

ID: Glycyrrhiza23_contig00034145 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00034145
         (392 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containi...   226   1e-57
ref|XP_003610936.1| Pentatricopeptide repeat-containing protein ...   214   6e-54
ref|XP_002325515.1| predicted protein [Populus trichocarpa] gi|2...   204   8e-51
emb|CBI31329.3| unnamed protein product [Vitis vinifera]              195   3e-48
ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containi...   195   3e-48

>ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Glycine max]
          Length = 723

 Score =  226 bits (576), Expect = 1e-57
 Identities = 107/130 (82%), Positives = 115/130 (88%)
 Frame = +2

Query: 2   RRDEVTYTSMIMGYGMRGEGETALKLFEEMCKLNIKPDQVTMVAVLTACSHSGLVAQGQL 181
           +RDEVTYTSMI+GYGM+GEGET LKLFEEMCKL IKPD VTMVAVLTACSHSGLVAQGQ+
Sbjct: 482 KRDEVTYTSMILGYGMKGEGETTLKLFEEMCKLEIKPDHVTMVAVLTACSHSGLVAQGQV 541

Query: 182 LFKMMIQDYGIKPSTEHYSCMVDLFGRAGFLNKAKEVITGMPYKPTSAMWGTLIGACRIH 361
           LFK MI  +GI P  EHY+CM DLFGRAG LNKAKE ITGMPYKPTSAMW TL+GACRIH
Sbjct: 542 LFKRMIDVHGIVPRLEHYACMADLFGRAGLLNKAKEFITGMPYKPTSAMWATLLGACRIH 601

Query: 362 GDMVMGEWAA 391
           G+  MGEWAA
Sbjct: 602 GNTEMGEWAA 611


>ref|XP_003610936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355512271|gb|AES93894.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 812

 Score =  214 bits (545), Expect = 6e-54
 Identities = 103/130 (79%), Positives = 115/130 (88%)
 Frame = +2

Query: 2   RRDEVTYTSMIMGYGMRGEGETALKLFEEMCKLNIKPDQVTMVAVLTACSHSGLVAQGQL 181
           R+DEVTYTSMIMGYG+ G+GETALKLF EM +LNIKPD VTMVAVL ACSHSGLVAQGQ+
Sbjct: 494 RKDEVTYTSMIMGYGVSGDGETALKLFAEMRRLNIKPDHVTMVAVLIACSHSGLVAQGQV 553

Query: 182 LFKMMIQDYGIKPSTEHYSCMVDLFGRAGFLNKAKEVITGMPYKPTSAMWGTLIGACRIH 361
           LF+ MI+ YGI P  EHYSCMVDLFGRAG L+KAKEVITGM  KPTSA+W TLIGAC+IH
Sbjct: 554 LFRKMIEVYGIDPRVEHYSCMVDLFGRAGLLDKAKEVITGMSCKPTSAIWATLIGACKIH 613

Query: 362 GDMVMGEWAA 391
           G+ V+GEWAA
Sbjct: 614 GNTVIGEWAA 623


>ref|XP_002325515.1| predicted protein [Populus trichocarpa] gi|222862390|gb|EEE99896.1|
           predicted protein [Populus trichocarpa]
          Length = 683

 Score =  204 bits (518), Expect = 8e-51
 Identities = 95/130 (73%), Positives = 113/130 (86%)
 Frame = +2

Query: 2   RRDEVTYTSMIMGYGMRGEGETALKLFEEMCKLNIKPDQVTMVAVLTACSHSGLVAQGQL 181
           RRD+VTYTS+I GYG++GEG+TALKLF+EM K  IKPDQVTMVAVL+ACSHSGLV +G +
Sbjct: 444 RRDKVTYTSLIAGYGIQGEGKTALKLFDEMIKHRIKPDQVTMVAVLSACSHSGLVTEGNV 503

Query: 182 LFKMMIQDYGIKPSTEHYSCMVDLFGRAGFLNKAKEVITGMPYKPTSAMWGTLIGACRIH 361
           LF+ M   YGI P+ EH+SCMVDLFGRAG LNKAK+VIT MPY+PT+AMW TL+GACRIH
Sbjct: 504 LFEKMSTLYGIVPAVEHFSCMVDLFGRAGLLNKAKKVITSMPYRPTTAMWATLVGACRIH 563

Query: 362 GDMVMGEWAA 391
           G+  +GEWAA
Sbjct: 564 GNTEIGEWAA 573


>emb|CBI31329.3| unnamed protein product [Vitis vinifera]
          Length = 753

 Score =  195 bits (496), Expect = 3e-48
 Identities = 91/129 (70%), Positives = 105/129 (81%)
 Frame = +2

Query: 5   RDEVTYTSMIMGYGMRGEGETALKLFEEMCKLNIKPDQVTMVAVLTACSHSGLVAQGQLL 184
           RD++TYTSMI GYGM+GEG+ ALKLFEEM    IKPD +TM+AVL+ACSHSGLV QGQLL
Sbjct: 458 RDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLL 517

Query: 185 FKMMIQDYGIKPSTEHYSCMVDLFGRAGFLNKAKEVITGMPYKPTSAMWGTLIGACRIHG 364
           F+ M   YG+ P  EH++CM DLFGRAG LNKAKE+I  MPYKPT AMW TLIGACRIH 
Sbjct: 518 FEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGACRIHR 577

Query: 365 DMVMGEWAA 391
           +  +GEWAA
Sbjct: 578 NTEIGEWAA 586


>ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Vitis vinifera]
          Length = 748

 Score =  195 bits (496), Expect = 3e-48
 Identities = 91/129 (70%), Positives = 105/129 (81%)
 Frame = +2

Query: 5   RDEVTYTSMIMGYGMRGEGETALKLFEEMCKLNIKPDQVTMVAVLTACSHSGLVAQGQLL 184
           RD++TYTSMI GYGM+GEG+ ALKLFEEM    IKPD +TM+AVL+ACSHSGLV QGQLL
Sbjct: 503 RDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLL 562

Query: 185 FKMMIQDYGIKPSTEHYSCMVDLFGRAGFLNKAKEVITGMPYKPTSAMWGTLIGACRIHG 364
           F+ M   YG+ P  EH++CM DLFGRAG LNKAKE+I  MPYKPT AMW TLIGACRIH 
Sbjct: 563 FEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGACRIHR 622

Query: 365 DMVMGEWAA 391
           +  +GEWAA
Sbjct: 623 NTEIGEWAA 631


Top